Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0011318 Lotus japonicus HOM05D003385 ORTHO05D003844 7.5e-26 119.8 62 100.0
Glyma.07G022200 Glycine max HOM05D003385 ORTHO05D003844 4.4e-10 67.4 58 50.0
Phvul.010G162266 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 5.8e-10 67.0 58 51.7
Glyma.08G219700 Glycine max HOM05D003385 ORTHO05D003844 1.3e-09 65.9 58 48.3
Glyma.11G031900 Glycine max HOM05D003385 ORTHO05D003844 3.7e-09 64.3 54 55.6
Phvul.002G062300 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 3.7e-09 64.3 57 50.9
COL.COLO4_14125 Corchorus olitorius HOM05D003385 ORTHO05D003844 8.3e-09 63.2 58 53.4
Lj3g0012147 Lotus japonicus HOM05D003385 ORTHO05D003844 1.9e-08 62.0 58 48.3
Medtr5g012410 Medicago truncatula HOM05D003385 ORTHO05D003844 1.9e-08 62.0 57 54.4
A03p55830 Brassica napus HOM05D003385 ORTHO05D003844 2.4e-08 61.6 57 52.6
BraA01t01604Z Brassica rapa HOM05D003385 ORTHO05D003844 2.4e-08 61.6 49 59.2
BraA03t14651Z Brassica rapa HOM05D003385 ORTHO05D003844 2.4e-08 61.6 57 52.6
A01p16500 Brassica napus HOM05D003385 ORTHO05D003844 4.1e-08 60.8 49 59.2
Manes.06G135000 Manihot esculenta HOM05D003385 ORTHO05D003844 4.1e-08 60.8 57 49.1
CiPaw.11G152800 Carya illinoinensis HOM05D003385 ORTHO05D003844 5.4e-08 60.5 57 45.6
TWI39G0135 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 5.4e-08 60.5 50 54.0
Atru.chr9.1329 Acer truncatum HOM05D003385 ORTHO05D003844 7.1e-08 60.1 57 45.6
BcaC06g32830 Brassica carinata HOM05D003385 ORTHO05D003844 7.1e-08 60.1 57 50.9
C07p54110 Brassica napus HOM05D003385 ORTHO05D003844 7.1e-08 60.1 57 50.9
CANSAT56G4393 Cannabis sativa HOM05D003385 ORTHO05D003844 7.1e-08 60.1 58 44.8
Cfa008171 Carpinus fangiana HOM05D003385 ORTHO05D003844 7.1e-08 60.1 57 52.6
Cfa011180 Carpinus fangiana HOM05D003385 ORTHO05D003844 7.1e-08 60.1 61 44.3
Lalb_Chr00c36g0408871 Lupinus albus HOM05D003385 ORTHO05D003844 7.1e-08 60.1 58 48.3
Lalb_Chr24g0392851 Lupinus albus HOM05D003385 ORTHO05D003844 7.1e-08 60.1 58 48.3
THA.LOC109116620 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 7.1e-08 60.1 58 50.0
Cc08_g12660 Coffea canephora HOM05D003385 ORTHO05D003844 9.2e-08 59.7 57 47.4
Eucgr.E00434 Eucalyptus grandis HOM05D003385 ORTHO05D003844 9.2e-08 59.7 58 46.6
QL12p012571 Quercus lobata HOM05D003385 ORTHO05D003844 9.2e-08 59.7 58 50.0
TWI23G0527 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 9.2e-08 59.7 57 49.1
BcaC06g32828 Brassica carinata HOM05D003385 ORTHO05D003844 1.2e-07 59.3 57 50.9
Gohir.A12G198600 Gossypium hirsutum HOM05D003385 ORTHO05D003844 1.2e-07 59.3 58 51.7
Gohir.D12G201300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 1.2e-07 59.3 58 51.7
Gorai.008G216400 Gossypium raimondii HOM05D003385 ORTHO05D003844 1.2e-07 59.3 58 51.7
Mapoly0083s0036 Marchantia polymorpha HOM05D003385 ORTHO05D003844 1.2e-07 59.3 62 45.2
SMO301G0071 Selaginella moellendorffii HOM05D003385 ORTHO05D003844 1.2e-07 59.3 57 47.4
Cfa007764 Carpinus fangiana HOM05D003385 ORTHO05D003844 1.6e-07 58.9 57 45.6
Nitab4.5_0012281g0010 Nicotiana tabacum HOM05D003385 ORTHO05D003844 1.6e-07 58.9 58 44.8
Oeu015324.1 Olea europaea HOM05D003385 ORTHO05D003844 1.6e-07 58.9 49 51.0
PSO675G2010 Papaver somniferum HOM05D003385 ORTHO05D003844 1.6e-07 58.9 58 46.6
Potri.014G059600 Populus trichocarpa HOM05D003385 ORTHO05D003844 1.6e-07 58.9 58 46.6
Aa31sc16G240 Aethionema arabicum HOM05D003385 ORTHO05D003844 2.1e-07 58.5 49 49.0
AL7G27920 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 2.1e-07 58.5 57 49.1
arahy.Tifrunner.gnm1.ann1.4KS3AX Arachis hypogaea HOM05D003385 ORTHO05D003844 2.1e-07 58.5 58 50.0
Carub.0007s1580 Capsella rubella HOM05D003385 ORTHO05D003844 2.1e-07 58.5 57 50.9
CARHR232630 Cardamine hirsuta HOM05D003385 ORTHO05D003844 2.1e-07 58.5 57 49.1
Cfa011178 Carpinus fangiana HOM05D003385 ORTHO05D003844 2.1e-07 58.5 60 41.7
MELO3C007606.2 Cucumis melo HOM05D003385 ORTHO05D003844 2.1e-07 58.5 57 43.9
MD06G1061000 Malus domestica HOM05D003385 ORTHO05D003844 2.1e-07 58.5 57 43.9
RcHm_v2.0_Chr1g0374431 Rosa chinensis HOM05D003385 ORTHO05D003844 2.1e-07 58.5 58 46.6
THA.LOC104825062 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 2.1e-07 58.5 57 45.6
GSVIVG01018638001 Vitis vinifera HOM05D003385 ORTHO05D003844 2.1e-07 58.5 58 51.7
BcaC09g50795 Brassica carinata HOM05D003385 ORTHO05D003844 2.7e-07 58.2 49 53.1
C01p20710 Brassica napus HOM05D003385 ORTHO05D003844 2.7e-07 58.2 49 53.1
BolC1t01997H Brassica oleracea HOM05D003385 ORTHO05D003844 2.7e-07 58.2 49 53.1
BolC7t45897H Brassica oleracea HOM05D003385 ORTHO05D003844 2.7e-07 58.2 57 49.1
Duzib205G0969 Durio zibethinus HOM05D003385 ORTHO05D003844 2.7e-07 58.2 58 50.0
Lsat_1_v5_gn_9_52121 Lactuca sativa HOM05D003385 ORTHO05D003844 2.7e-07 58.2 58 44.8
Potri.001G123000 Populus trichocarpa HOM05D003385 ORTHO05D003844 2.7e-07 58.2 57 43.9
Atru.chr1.724 Acer truncatum HOM05D003385 ORTHO05D003844 3.5e-07 57.8 57 45.6
Manes.01G079400 Manihot esculenta HOM05D003385 ORTHO05D003844 3.5e-07 57.8 57 42.1
SEGI_20473 Sequoiadendron giganteum HOM05D003385 ORTHO05D003844 3.5e-07 57.8 58 41.4
VMungo0331G0997 Vigna mungo HOM05D004080 ORTHO05D003844 3.5e-07 57.8 58 48.3
CSS0016808 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 4.6e-07 57.4 58 44.8
CANSAT21G1636 Cannabis sativa HOM05D003385 ORTHO05D003844 4.6e-07 57.4 56 46.4
CiPaw.12G108800 Carya illinoinensis HOM05D003385 ORTHO05D003844 4.6e-07 57.4 57 43.9
Duzib068G0982 Durio zibethinus HOM05D003385 ORTHO05D003844 4.6e-07 57.4 58 48.3
Gohir.A03G058800 Gossypium hirsutum HOM05D003385 ORTHO05D003844 4.6e-07 57.4 58 46.6
Gohir.D03G107300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 4.6e-07 57.4 58 46.6
Gorai.003G113600 Gossypium raimondii HOM05D003385 ORTHO05D003844 4.6e-07 57.4 58 46.6
Nn1g01044 Nelumbo nucifera HOM05D003385 ORTHO05D003844 4.6e-07 57.4 57 43.9
PSO063G5519 Papaver somniferum HOM05D003385 ORTHO05D003844 4.6e-07 57.4 57 45.6
PSO782G4697 Papaver somniferum HOM05D003385 ORTHO05D003844 4.6e-07 57.4 57 45.6
Thecc.03G156100 Theobroma cacao HOM05D003385 ORTHO05D003844 4.6e-07 57.4 58 48.3
BcaNung06354 Brassica carinata HOM05D003385 ORTHO05D003844 6.0e-07 57.0 49 53.1
CiPaw.03G093500 Carya illinoinensis HOM05D003385 ORTHO05D003844 6.0e-07 57.0 53 49.1
Lalb_Chr04g0263501 Lupinus albus HOM05D003385 ORTHO05D003844 6.0e-07 57.0 58 43.1
Migut.A00964 Erythranthe guttata HOM05D003385 ORTHO05D003844 7.8e-07 56.6 58 46.6
Lsat_1_v5_gn_6_3121 Lactuca sativa HOM05D003385 ORTHO05D003844 7.8e-07 56.6 58 44.8
Manes.02G038600 Manihot esculenta HOM05D003385 ORTHO05D003844 7.8e-07 56.6 58 46.6
Medtr2g105230 Medicago truncatula HOM05D003385 ORTHO05D003844 7.8e-07 56.6 60 45.0
Peaxi162Scf00002g01611 Petunia axillaris HOM05D003385 ORTHO05D003844 7.8e-07 56.6 57 43.9
PGR042G2744 Punica granatum HOM05D003385 ORTHO05D003844 7.8e-07 56.6 57 43.9
Solyc06g034320.1 Solanum lycopersicum HOM05D003385 ORTHO05D003844 7.8e-07 56.6 49 49.0
Sopen06g010940 Solanum pennellii HOM05D003385 ORTHO05D003844 7.8e-07 56.6 49 49.0
AT4G25225 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 1.0e-06 56.2 57 47.4
CSS0001286 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.0e-06 56.2 60 45.0
Glyma.08G219600 Glycine max HOM05D003385 ORTHO05D003844 1.0e-06 56.2 49 51.0
Glyma.15G003000 Glycine max HOM05D003385 ORTHO05D003844 1.0e-06 56.2 58 48.3
Potri.001G124100 Populus trichocarpa HOM05D003385 ORTHO05D003844 1.0e-06 56.2 58 43.1
THA.LOC109116621 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 1.0e-06 56.2 60 46.7
CSS0009843 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.3e-06 55.8 58 44.8
CAN.G49.2 Capsicum annuum HOM05D003385 ORTHO05D003844 1.3e-06 55.8 49 49.0
ClCG01G017280 Citrullus lanatus HOM05D003385 ORTHO05D003844 1.3e-06 55.8 57 40.4
Nn6g33986 Nelumbo nucifera HOM05D003385 ORTHO05D003844 1.3e-06 55.8 57 38.6
Phvul.005G182800 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 1.3e-06 55.8 57 47.4
Phvul.010G162200 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 1.3e-06 55.8 49 49.0
Psat7g263040 Pisum sativum HOM05D003385 ORTHO05D003844 1.3e-06 55.8 57 47.4
Glyma.13G370600 Glycine max HOM05D003385 ORTHO05D003844 1.7e-06 55.5 57 45.6
Zm00001eb265740 Zea mays HOM05D003385 ORTHO05D003844 1.7e-06 55.5 59 42.4
Aa31LG2G12640 Aethionema arabicum HOM05D003385 ORTHO05D003844 2.3e-06 55.1 60 45.0
BcaB06g28869 Brassica carinata HOM05D003385 ORTHO05D003844 2.3e-06 55.1 60 43.3
AUR62002201 Chenopodium quinoa HOM05D003385 ORTHO05D003844 2.3e-06 55.1 48 52.1
Duzib138G0675 Durio zibethinus HOM05D003385 ORTHO05D003844 2.3e-06 55.1 60 46.7
HanXRQChr02g0049401 Helianthus annuus HOM05D003385 ORTHO05D003844 2.3e-06 55.1 52 50.0
Hma1.2p1_0432F.1_g151710 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 2.3e-06 55.1 58 48.3
MD07G1254000 Malus domestica HOM05D003385 ORTHO05D003844 2.3e-06 55.1 58 44.8
Nitab4.5_0000859g0280 Nicotiana tabacum HOM05D023894 ORTHO05D024776 2.3e-06 55.1 47 53.2
SalBow2G2468 Salvia bowleyana HOM05D003385 ORTHO05D003844 2.3e-06 55.1 58 46.6
TAR374G1520 Trochodendron aralioides HOM05D003385 ORTHO05D003844 2.3e-06 55.1 57 40.4
Cfa011181 Carpinus fangiana HOM05D003385 ORTHO05D003844 3.0e-06 54.7 58 41.4
Hma1.2p1_0301F.1_g118330 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 3.0e-06 54.7 58 43.1
TPR.G25901 Trifolium pratense HOM05D003385 ORTHO05D003844 3.0e-06 54.7 59 44.1
Haze_02669 Corylus avellana HOM05D003385 ORTHO05D003844 3.9e-06 54.3 66 40.9
HanXRQChr13g0396331 Helianthus annuus HOM05D003385 ORTHO05D003844 3.9e-06 54.3 57 43.9
Lj3g0012323 Lotus japonicus HOM05D003385 ORTHO05D003844 3.9e-06 54.3 57 42.1
Medtr4g007230 Medicago truncatula HOM05D003385 ORTHO05D003844 3.9e-06 54.3 58 48.3
PSO210G0600 Papaver somniferum HOM05D003385 ORTHO05D003844 3.9e-06 54.3 57 40.4
Prupe.2G277300 Prunus persica HOM05D003385 ORTHO05D003844 3.9e-06 54.3 58 43.1
Sabra14G0043600 Salix brachista HOM05D003385 ORTHO05D003844 3.9e-06 54.3 58 46.6
Sed0003372 Sechium edule HOM05D003385 ORTHO05D003844 3.9e-06 54.3 57 45.6
Sed0011687 Sechium edule HOM05D003385 ORTHO05D003844 3.9e-06 54.3 57 42.1
Carub.0004s1747 Capsella rubella HOM05D003385 ORTHO05D003844 5.1e-06 53.9 57 45.6
CAN.G1469.7 Capsicum annuum HOM05D023894 ORTHO05D024776 5.1e-06 53.9 51 49.0
Glyma.18G147400 Glycine max HOM05D003385 ORTHO05D003844 5.1e-06 53.9 58 46.6
Ca_01010_v3 Cicer arietinum L. HOM05D003385 ORTHO05D003844 6.6e-06 53.5 62 46.8
EL10Ac3g05843 Beta vulgaris HOM05D003385 ORTHO05D003844 8.6e-06 53.1 50 50.0
CSS0013240 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 8.6e-06 53.1 51 45.1
CSS0043100 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 8.6e-06 53.1 51 45.1
CARHR129980 Cardamine hirsuta HOM05D003385 ORTHO05D003844 8.6e-06 53.1 57 43.9
CiPaw.13G033300 Carya illinoinensis HOM05D003385 ORTHO05D003844 8.6e-06 53.1 58 39.7
Nitab4.5_0006445g0010 Nicotiana tabacum HOM05D023894 ORTHO05D024776 8.6e-06 53.1 47 51.1
Sc01g0008530 Simmondsia chinensis HOM05D003385 ORTHO05D003844 8.6e-06 53.1 58 41.4
Thecc.01G381400 Theobroma cacao HOM05D003385 ORTHO05D003844 8.6e-06 53.1 60 43.3


User provided reference genes

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