Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0011068 Lotus japonicus HOM05D007916 ORTHO05D010074 1.4e-96 356.3 180 100.0
Lj2g0002075 Lotus japonicus HOM05D007916 ORTHO05D010074 1.5e-74 283.1 189 78.8
Glyma.09G198900 Glycine max HOM05D007916 ORTHO05D010074 3.8e-70 268.5 187 74.3
Medtr8g073850 Medicago truncatula HOM05D007916 ORTHO05D010074 1.1e-69 266.9 191 71.2
Lalb_Chr09g0321231 Lupinus albus HOM05D007916 ORTHO05D010074 1.6e-68 263.1 188 71.8
Ca_22424_v3 Cicer arietinum L. HOM05D007916 ORTHO05D010074 3.6e-68 261.9 188 69.1
Psat4g104200 Pisum sativum HOM05D007916 ORTHO05D010074 6.1e-68 261.2 187 69.5
QL06p052846 Quercus lobata HOM05D007916 ORTHO05D010074 1.0e-67 260.4 188 69.1
Medtr8g073770 Medicago truncatula HOM05D007916 ORTHO05D010074 2.3e-67 259.2 191 69.6
Prupe.7G181300 Prunus persica HOM05D007916 ORTHO05D010074 8.7e-67 257.3 180 68.3
Phvul.003G269500 Phaseolus vulgaris HOM05D007916 ORTHO05D010074 1.9e-66 256.1 183 71.6
CiPaw.08G181000 Carya illinoinensis HOM05D007916 ORTHO05D010074 1.3e-65 253.4 188 68.6
Thecc.01G006300 Theobroma cacao HOM05D007916 ORTHO05D010074 2.8e-65 252.3 180 67.8
TPR.G18290 Trifolium pratense HOM05D007916 ORTHO05D010074 6.3e-65 251.1 156 76.3
Glyma.11G085200 Glycine max HOM05D007916 ORTHO05D010074 1.1e-64 250.4 196 66.8
Cfa007071 Carpinus fangiana HOM05D007916 ORTHO05D010074 1.8e-64 249.6 179 70.4
Cfa021284 Carpinus fangiana HOM05D007916 ORTHO05D010074 1.8e-64 249.6 179 70.4
MD02G1118100 Malus domestica HOM05D007916 ORTHO05D010074 2.4e-64 249.2 153 76.5
VMungo0251G0273 Vigna mungo HOM05D007916 ORTHO05D010074 3.4e-63 245.4 181 68.5
Manes.01G154600 Manihot esculenta HOM05D007916 ORTHO05D010074 5.9e-63 244.6 182 68.1
Potri.005G100700 Populus trichocarpa HOM05D007916 ORTHO05D010074 5.9e-63 244.6 181 68.5
Manes.17G004000 Manihot esculenta HOM05D007916 ORTHO05D010074 7.7e-63 244.2 182 67.6
Nn5g30966 Nelumbo nucifera HOM05D007916 ORTHO05D010074 1.3e-62 243.4 152 76.3
CANSAT25G0415 Cannabis sativa HOM05D007916 ORTHO05D010074 2.9e-62 242.3 187 65.2
Duzib264G1152 Durio zibethinus HOM05D007916 ORTHO05D010074 2.9e-62 242.3 183 64.5
Manes.02G113500 Manihot esculenta HOM05D007916 ORTHO05D010074 3.8e-62 241.9 182 66.5
Phvul.002G115700 Phaseolus vulgaris HOM05D007916 ORTHO05D010074 3.8e-62 241.9 196 65.8
FvH4_1g10500 Fragaria vesca HOM05D007916 ORTHO05D010074 1.4e-61 240.0 155 73.5
FAN19G0206 Fragaria x ananassa HOM05D007916 ORTHO05D010074 1.4e-61 240.0 155 73.5
FAN28G0654 Fragaria x ananassa HOM05D007916 ORTHO05D010074 1.9e-61 239.6 155 73.5
FAN26G2729 Fragaria x ananassa HOM05D007916 ORTHO05D010074 4.2e-61 238.4 155 72.9
FAN26G3374 Fragaria x ananassa HOM05D007916 ORTHO05D010074 4.2e-61 238.4 155 72.9
COL.COLO4_22545 Corchorus olitorius HOM05D007916 ORTHO05D010074 7.2e-61 237.7 187 61.5
PGR102G1177 Punica granatum HOM05D007916 ORTHO05D010074 7.2e-61 237.7 152 75.0
Hma1.2p1_0085F.1_g044830 Hydrangea macrophylla HOM05D007916 ORTHO05D010074 9.4e-61 237.3 187 63.1
Dinv40180 Davidia involucrata HOM05D000046 ORTHO05D000195 1.2e-60 236.9 170 66.5
TAR381G0850 Trochodendron aralioides HOM05D007916 ORTHO05D010074 2.7e-60 235.7 150 72.7
RcHm_v2.0_Chr2g0097361 Rosa chinensis HOM05D007916 ORTHO05D010074 1.0e-59 233.8 153 72.5
arahy.Tifrunner.gnm1.ann1.B3G9N7 Arachis hypogaea HOM05D007916 ORTHO05D010074 3.9e-59 231.9 150 73.3
arahy.Tifrunner.gnm1.ann1.IBR8Q2 Arachis hypogaea HOM05D007916 ORTHO05D010074 3.9e-59 231.9 150 73.3
MD02G1118400 Malus domestica HOM05D007916 ORTHO05D010074 5.1e-59 231.5 153 71.2
MBI08_g04809_MAGBIO Magnolia biondii HOM05D007916 ORTHO05D010074 1.1e-58 230.3 149 72.5
Aqoxy6G01679 Aquilegia oxysepala HOM05D007916 ORTHO05D010074 7.4e-58 227.6 189 59.8
Sabra05G0083300 Salix brachista HOM05D007916 ORTHO05D010074 9.7e-58 227.3 172 65.1
CAN.G1238.3 Capsicum annuum HOM05D007916 ORTHO05D010074 1.3e-57 226.9 148 69.6
PGSC0003DMG403001521 Solanum tuberosum HOM05D007916 ORTHO05D010074 1.7e-57 226.5 148 70.9
Sopen02g027500 Solanum pennellii HOM05D007916 ORTHO05D010074 3.7e-57 225.3 174 64.4
ClCG10G000210 Citrullus lanatus HOM05D007916 ORTHO05D010074 3.1e-56 222.2 148 71.6
MELO3C013719.2 Cucumis melo HOM05D007916 ORTHO05D010074 4.1e-56 221.9 149 70.5
Ah.08g211140 Amaranthus hybridus HOM05D007916 ORTHO05D010074 9.1e-56 220.7 152 70.4
HanXRQChr14g0442461 Helianthus annuus HOM05D007916 ORTHO05D010074 9.1e-56 220.7 175 62.3
Solyc02g082740.1 Solanum lycopersicum HOM05D007916 ORTHO05D010074 1.2e-55 220.3 148 68.9
CSS0010065 Camellia sinensis var. sinensis HOM05D007916 ORTHO05D010074 2.9e-54 215.7 150 66.7
HanXRQChr14g0442451 Helianthus annuus HOM05D007916 ORTHO05D010074 2.9e-54 215.7 178 61.8
ATR0661G436 Amborella trichopoda HOM05D007916 ORTHO05D010074 1.8e-51 206.5 176 58.5
AUR62040166 Chenopodium quinoa HOM05D007916 ORTHO05D010074 3.0e-51 205.7 146 67.1
Lsat_1_v5_gn_2_73460 Lactuca sativa HOM05D007916 ORTHO05D010074 3.9e-51 205.3 180 57.8
Zm00001eb145860 Zea mays HOM05D007916 ORTHO05D010074 1.3e-49 200.3 147 60.5
AUR62037915 Chenopodium quinoa HOM05D007916 ORTHO05D010074 2.2e-49 199.5 146 64.4
Os01g0879200 Oryza sativa ssp. japonica HOM05D007916 ORTHO05D010074 1.6e-47 193.4 155 56.1
Sabra05G0083200 Salix brachista HOM05D007916 ORTHO05D010074 2.7e-44 182.6 181 53.6
Potri.005G100600 Populus trichocarpa HOM05D007916 ORTHO05D010074 5.7e-42 174.9 178 52.8
Lj4P234T30 Lonicera japonica HOM05D007916 ORTHO05D010074 3.1e-40 169.1 103 72.8
EL10Ac4g07997 Beta vulgaris HOM05D007916 ORTHO05D010074 5.3e-40 168.3 182 51.1
VMungo1215G2711 Vigna mungo HOM05D007916 ORTHO05D010074 4.5e-39 165.2 188 50.0
EL10Ac1g00145 Beta vulgaris HOM05D007916 ORTHO05D010074 1.3e-38 163.7 146 55.5
AUR62029252 Chenopodium quinoa HOM05D007916 ORTHO05D010074 1.7e-38 163.3 178 50.0
Ah.05g178650 Amaranthus hybridus HOM05D007916 ORTHO05D010074 2.2e-38 162.9 147 51.0
AUR62034212 Chenopodium quinoa HOM05D007916 ORTHO05D010074 1.5e-37 160.2 153 52.3
AUR62034214 Chenopodium quinoa HOM05D007916 ORTHO05D010074 3.2e-37 159.1 153 51.6
AUR62029249 Chenopodium quinoa HOM05D007916 ORTHO05D010074 1.4e-32 143.7 150 50.0
Os01g0879300 Oryza sativa ssp. japonica HOM05D007916 ORTHO05D010074 3.1e-32 142.5 163 47.9
AUR62014631 Chenopodium quinoa HOM05D007916 ORTHO05D010074 8.0e-20 101.3 109 45.0
SMO143G0023 Selaginella moellendorffii HOM05D007916 ORTHO05D010074 8.0e-20 101.3 144 31.9
Zm00001eb051440 Zea mays HOM05D007916 ORTHO05D010074 3.2e-16 89.4 81 50.6
Ah.09g237060 Amaranthus hybridus HOM05D007916 ORTHO05D010074 9.5e-13 77.8 89 42.7
QL08p032297 Quercus lobata HOM05D000180 ORTHO05D000099 1.4e-11 73.9 131 38.9
Zm00001eb212920 Zea mays HOM05D007916 ORTHO05D010074 3.1e-11 72.8 66 50.0
AUR62029251 Chenopodium quinoa HOM05D007916 ORTHO05D010074 8.9e-11 71.2 90 41.1
Phvul.001G145700 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 3.7e-09 65.9 183 30.1
Potri.005G100750 Populus trichocarpa HOM05D007916 ORTHO05D010074 4.9e-09 65.5 83 49.4
QL10p054545 Quercus lobata HOM05D000180 ORTHO05D000099 1.9e-08 63.5 144 29.2
Haze_12834 Corylus avellana HOM05D000180 ORTHO05D000099 5.4e-08 62.0 148 33.1
Phvul.010G063500 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 5.4e-08 62.0 141 29.8
SMO304G0105 Selaginella moellendorffii HOM05D000180 ORTHO05D000099 5.4e-08 62.0 165 29.7
Haze_12837 Corylus avellana HOM05D000180 ORTHO05D000099 1.2e-07 60.8 148 33.1
HPP92_003134 Vanilla planifolia HOM05D000180 ORTHO05D000099 1.6e-07 60.5 174 25.9
FAN09G1602 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.0e-07 60.1 144 30.6
Glyma.03G147800 Glycine max HOM05D000180 ORTHO05D000099 2.0e-07 60.1 154 29.2
FAN14G5554 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.7e-07 59.7 87 41.4
Prupe.3G215600 Prunus persica HOM05D000180 ORTHO05D000099 2.7e-07 59.7 125 32.0
Eucgr.A02481 Eucalyptus grandis HOM05D000180 ORTHO05D000099 3.5e-07 59.3 146 30.1
Cfa009619 Carpinus fangiana HOM05D000180 ORTHO05D000099 4.6e-07 58.9 145 29.0
Haze_12825 Corylus avellana HOM05D000180 ORTHO05D000099 6.0e-07 58.5 146 32.9
GSVIVG01025394001 Vitis vinifera HOM05D000180 ORTHO05D000099 6.0e-07 58.5 129 29.5
FvH4_6g42490 Fragaria vesca HOM05D000180 ORTHO05D000099 7.8e-07 58.2 154 28.6
FAN02G4293 Fragaria x ananassa HOM05D000180 ORTHO05D000099 7.8e-07 58.2 144 29.9
Haze_22988 Corylus avellana HOM05D000180 ORTHO05D000099 1.0e-06 57.8 142 27.5
FvH4_6g42510 Fragaria vesca HOM05D000180 ORTHO05D000099 1.0e-06 57.8 87 40.2
Os11g0179500 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 1.3e-06 57.4 150 28.7
TPR.G5231 Trifolium pratense HOM05D000180 ORTHO05D000099 1.3e-06 57.4 149 31.5
TWI34G0222 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 1.3e-06 57.4 147 28.6
TAR633G2755 Trochodendron aralioides HOM05D000180 ORTHO05D000099 1.3e-06 57.4 144 26.4
Medtr4g122110 Medicago truncatula HOM05D000180 ORTHO05D000099 1.7e-06 57.0 144 31.9
TPR.G5199 Trifolium pratense HOM05D000180 ORTHO05D000099 1.7e-06 57.0 116 29.3
HPP92_003135 Vanilla planifolia HOM05D000180 ORTHO05D000099 1.7e-06 57.0 150 28.0
COL.COLO4_30591 Corchorus olitorius HOM05D000180 ORTHO05D000099 2.3e-06 56.6 126 33.3
Lj1g0027716 Lotus japonicus HOM05D000180 ORTHO05D000099 2.3e-06 56.6 190 28.4
Medtr4g013345 Medicago truncatula HOM05D000180 ORTHO05D000099 2.3e-06 56.6 146 28.8
SHI21201 Sapria himalayana HOM05D000180 ORTHO05D000099 2.3e-06 56.6 125 32.8
AL8G18810 Arabidopsis lyrata HOM05D000180 ORTHO05D000099 3.0e-06 56.2 156 25.0
AL8G18840 Arabidopsis lyrata HOM05D000180 ORTHO05D000099 3.0e-06 56.2 156 25.0
Cfa009617 Carpinus fangiana HOM05D000180 ORTHO05D000099 3.0e-06 56.2 145 29.7
COL.COLO4_30590 Corchorus olitorius HOM05D000180 ORTHO05D000099 3.0e-06 56.2 106 34.0
PGR004G0710 Punica granatum HOM05D000180 ORTHO05D000099 3.0e-06 56.2 144 26.4
TPR.G13359 Trifolium pratense HOM05D000180 ORTHO05D000099 3.0e-06 56.2 156 28.8
AL3G25620 Arabidopsis lyrata HOM05D000180 ORTHO05D000099 3.9e-06 55.8 176 25.6
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 3.9e-06 55.8 181 26.5
TAR633G1081 Trochodendron aralioides HOM05D000180 ORTHO05D000099 3.9e-06 55.8 144 27.8
Lj1P461T10 Lonicera japonica HOM05D000180 ORTHO05D000099 5.0e-06 55.5 187 27.3
Medtr4g013320 Medicago truncatula HOM05D000180 ORTHO05D000099 5.0e-06 55.5 146 28.1
Peaxi162Scf00363g00822 Petunia axillaris HOM05D000180 ORTHO05D000099 5.0e-06 55.5 153 29.4
Psat3g067480 Pisum sativum HOM05D000180 ORTHO05D000099 5.0e-06 55.5 165 25.5
SEGI_34023 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 5.0e-06 55.5 149 30.2
TPR.G13355 Trifolium pratense HOM05D000180 ORTHO05D000099 5.0e-06 55.5 123 30.1
FAN05G1781 Fragaria x ananassa HOM05D000180 ORTHO05D000099 6.6e-06 55.1 89 36.0
Manes.09G038500 Manihot esculenta HOM05D000180 ORTHO05D000099 6.6e-06 55.1 189 26.5
Medtr4g013310 Medicago truncatula HOM05D000180 ORTHO05D000099 6.6e-06 55.1 146 28.8
Nn7g35945 Nelumbo nucifera HOM05D000180 ORTHO05D000099 6.6e-06 55.1 147 30.6
RcHm_v2.0_Chr2g0158891 Rosa chinensis HOM05D000180 ORTHO05D000099 6.6e-06 55.1 166 28.9
TPR.G13368 Trifolium pratense HOM05D000180 ORTHO05D000099 6.6e-06 55.1 156 28.2
TPR.G5262 Trifolium pratense HOM05D000180 ORTHO05D000099 6.6e-06 55.1 130 30.0
Lalb_Chr12g0207301 Lupinus albus HOM05D000180 ORTHO05D000099 8.6e-06 54.7 144 29.9
TAR629G2919 Trochodendron aralioides HOM05D000180 ORTHO05D000099 8.6e-06 54.7 166 27.7


User provided reference genes

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