Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0010779 Lotus japonicus HOM05D007884 ORTHO05D009968 1.6e-229 799.3 457 100.0
Glyma.19G044700 Glycine max HOM05D007884 ORTHO05D009968 1.0e-127 461.1 474 65.8
Psat1g062080 Pisum sativum HOM05D007884 ORTHO05D009968 4.7e-125 452.2 457 64.3
Medtr6g017035 Medicago truncatula HOM05D007884 ORTHO05D009968 2.9e-122 443.0 456 64.3
VMungo1309G1853 Vigna mungo HOM05D007884 ORTHO05D009968 5.9e-120 435.3 485 61.9
Phvul.003G017800 Phaseolus vulgaris HOM05D007884 ORTHO05D009968 1.1e-118 431.0 481 62.6
TPR.G21024 Trifolium pratense HOM05D007884 ORTHO05D009968 9.8e-115 417.9 468 60.5
Lalb_Chr02g0158331 Lupinus albus HOM05D007884 ORTHO05D009968 7.3e-110 401.7 464 61.4
Ca_26346_v3 Cicer arietinum L. HOM05D007884 ORTHO05D009968 3.1e-76 290.0 270 56.7
CiPaw.03G016000 Carya illinoinensis HOM05D007884 ORTHO05D009968 3.2e-73 280.0 376 51.9
QL09p002129 Quercus lobata HOM05D007884 ORTHO05D009968 3.5e-72 276.6 377 41.6
Prupe.1G544500 Prunus persica HOM05D007884 ORTHO05D009968 1.5e-70 271.2 372 47.0
Haze_13924 Corylus avellana HOM05D007884 ORTHO05D009968 9.6e-70 268.5 376 48.7
Cfa008093 Carpinus fangiana HOM05D007884 ORTHO05D009968 3.7e-69 266.5 376 39.6
Potri.019G075900 Populus trichocarpa HOM05D007884 ORTHO05D009968 1.8e-68 264.2 441 35.8
Thecc.08G176500 Theobroma cacao HOM05D007884 ORTHO05D009968 6.5e-66 255.8 476 43.9
Duzib177G0356 Durio zibethinus HOM05D007884 ORTHO05D009968 3.3e-62 243.4 461 45.1
Dinv09394 Davidia involucrata HOM05D007884 ORTHO05D009968 1.5e-59 234.6 369 49.3
Gorai.001G097200 Gossypium raimondii HOM05D007884 ORTHO05D009968 1.7e-58 231.1 390 42.8
Hma1.2p1_0004F.1_g003780 Hydrangea macrophylla HOM05D007884 ORTHO05D009968 1.7e-58 231.1 367 49.9
Gohir.D07G090700 Gossypium hirsutum HOM05D007884 ORTHO05D009968 2.2e-58 230.7 390 43.1
CANSAT25G3642 Cannabis sativa HOM05D007884 ORTHO05D009968 3.8e-58 229.9 383 42.3
Ciclev10019950m.g Citrus clementina HOM05D007884 ORTHO05D009968 6.5e-58 229.2 398 49.0
Gohir.A07G085300 Gossypium hirsutum HOM05D007884 ORTHO05D009968 6.5e-58 229.2 390 41.5
DCAR_014075 Daucus carota HOM05D007884 ORTHO05D009968 8.5e-58 228.8 369 50.1
Sabra19G0086300 Salix brachista HOM05D007884 ORTHO05D009968 2.5e-57 227.3 405 34.8
MD08G1213200 Malus domestica HOM05D007884 ORTHO05D009968 2.1e-56 224.2 376 46.8
Nitab4.5_0006974g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 2.1e-56 224.2 372 43.5
Cc11_g04640 Coffea canephora HOM05D007884 ORTHO05D009968 1.4e-55 221.5 372 34.4
TAR383G0946 Trochodendron aralioides HOM05D007884 ORTHO05D009968 2.3e-55 220.7 369 48.0
Nitab4.5_0005550g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 8.8e-55 218.8 372 47.3
PGR031G2984 Punica granatum HOM05D007884 ORTHO05D009968 1.9e-54 217.6 431 41.5
Lj9P699T19 Lonicera japonica HOM05D007884 ORTHO05D009968 1.3e-53 214.9 368 49.5
Sc26g0002320 Simmondsia chinensis HOM05D007884 ORTHO05D009968 1.3e-53 214.9 381 45.4
CsaV3_4G033680 Cucumis sativus L. HOM05D007884 ORTHO05D009968 3.7e-53 213.4 372 44.9
ClCG10G005030 Citrullus lanatus HOM05D007884 ORTHO05D009968 6.3e-53 212.6 418 42.1
Sed0007017 Sechium edule HOM05D007884 ORTHO05D009968 6.3e-53 212.6 403 33.5
COL.COLO4_22419 Corchorus olitorius HOM05D007884 ORTHO05D009968 4.1e-52 209.9 350 47.4
CAN.G63.2 Capsicum annuum HOM05D007884 ORTHO05D009968 2.6e-51 207.2 368 46.5
TWI75G0081 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 3.4e-51 206.8 449 42.3
Actinidia29389 Actinidia chinensis HOM05D007884 ORTHO05D009968 1.0e-50 205.3 347 48.1
PGSC0003DMG400013578 Solanum tuberosum HOM05D007884 ORTHO05D009968 1.0e-50 205.3 375 45.6
Eucgr.F02657 Eucalyptus grandis HOM05D007884 ORTHO05D009968 1.3e-50 204.9 371 48.2
AUR62022398 Chenopodium quinoa HOM05D007884 ORTHO05D009968 1.6e-48 198.0 484 40.1
Sopen07g021970 Solanum pennellii HOM05D007884 ORTHO05D009968 3.6e-48 196.8 368 46.2
EL10Ac1g01640 Beta vulgaris HOM05D007884 ORTHO05D009968 2.3e-47 194.1 471 39.1
Aqoxy7G02021 Aquilegia oxysepala HOM05D007884 ORTHO05D009968 3.9e-47 193.4 370 43.8
FvH4_5g33340 Fragaria vesca HOM05D007884 ORTHO05D009968 9.7e-46 188.7 379 31.9
FAN18G0070 Fragaria x ananassa HOM05D007884 ORTHO05D009968 9.7e-46 188.7 379 31.9
TWI18G0215 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 2.8e-45 187.2 332 33.4
MELO3C016698.2 Cucumis melo HOM05D007884 ORTHO05D009968 2.4e-44 184.1 325 45.8
Oeu023202.1 Olea europaea HOM05D007884 ORTHO05D009968 4.1e-44 183.3 371 45.0
RcHm_v2.0_Chr7g0232061 Rosa chinensis HOM05D007884 ORTHO05D009968 9.1e-44 182.2 372 31.5
PSO242G0004 Papaver somniferum HOM05D007884 ORTHO05D009968 2.6e-43 180.6 376 43.4
HanXRQChr17g0559001 Helianthus annuus HOM05D007884 ORTHO05D009968 5.9e-43 179.5 413 38.7
Ah.05g168770 Amaranthus hybridus HOM05D007884 ORTHO05D009968 5.0e-42 176.4 352 44.6
SGA_v2.0_scaffold118G32599 Striga asiatica HOM05D007884 ORTHO05D009968 2.5e-41 174.1 371 42.0
Zm00001eb001440 Zea mays HOM05D007884 ORTHO05D009968 8.0e-40 169.1 395 31.1
Migut.C01368 Erythranthe guttata HOM05D007884 ORTHO05D009968 1.4e-39 168.3 337 42.7
MSTRG.1590 Avicennia marina HOM05D007884 ORTHO05D009968 3.9e-39 166.8 373 39.7
Nn3g17503 Nelumbo nucifera HOM05D007884 ORTHO05D009968 6.7e-39 166.0 373 42.6
Nn4g26038 Nelumbo nucifera HOM05D007884 ORTHO05D009968 8.8e-39 165.6 373 42.4
FAN04G3024 Fragaria x ananassa HOM05D007884 ORTHO05D009968 1.1e-38 165.2 379 31.1
CSS0033652 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 7.0e-36 156.0 372 41.7
CSS0035845 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 7.0e-36 156.0 372 41.7
Lsat_1_v5_gn_4_133080 Lactuca sativa HOM05D007884 ORTHO05D009968 1.6e-35 154.8 461 34.7
Os03g0119700 Oryza sativa ssp. japonica HOM05D007884 ORTHO05D009968 1.7e-34 151.4 424 30.0
HPP92_008446 Vanilla planifolia HOM05D007884 ORTHO05D009968 6.5e-34 149.4 367 43.1
FAN08G1312 Fragaria x ananassa HOM05D007884 ORTHO05D009968 1.5e-33 148.3 304 31.6
MBI04_g00944_MAGBIO Magnolia biondii HOM05D007884 ORTHO05D009968 1.5e-33 148.3 205 38.0
Cpa.g.sc21.77 Carica papaya HOM05D007884 ORTHO05D009968 1.6e-32 144.8 277 45.8
AUR62043537 Chenopodium quinoa HOM05D007884 ORTHO05D009968 1.2e-30 138.7 291 46.0
Manes.18G118701 Manihot esculenta HOM05D007884 ORTHO05D009968 1.2e-30 138.7 287 41.8
Atru.chr13.2470 Acer truncatum HOM05D007884 ORTHO05D009968 9.7e-30 135.6 287 47.4
HPP92_008463 Vanilla planifolia HOM05D007884 ORTHO05D009968 7.7e-27 125.9 367 41.1
CDE04G2395 Ceratophyllum demersum HOM05D007884 ORTHO05D009968 5.0e-26 123.2 251 51.0
ATR0716G085 Amborella trichopoda HOM05D007884 ORTHO05D009968 5.9e-19 99.8 363 38.6
ECA232G0955 Erigeron canadensis HOM05D007884 ORTHO05D009968 2.2e-13 81.3 284 37.7
CAN.G6574.1 Capsicum annuum HOM05D007884 ORTHO05D009968 2.4e-12 77.8 238 45.8
SEGI_26452 Sequoiadendron giganteum HOM05D007884 ORTHO05D009968 9.2e-12 75.9 370 34.3
SGA_v2.0_scaffold79G25581 Striga asiatica HOM05D000424 ORTHO05D000355 3.1e-07 60.8 192 27.1
Hund17562 Selenicereus undatus HOM05D007884 ORTHO05D009968 5.2e-07 60.1 75 34.7
SGA_v2.0_scaffold43G16408 Striga asiatica HOM05D002986 ORTHO05D003966 5.2e-07 60.1 152 27.6
SGA_v2.0_scaffold581G53045 Striga asiatica HOM05D002986 ORTHO05D003966 6.8e-07 59.7 152 27.6
Peaxi162Scf00078g00351 Petunia axillaris HOM05D006237 ORTHO05D002967 9.8e-06 55.8 61 42.6


User provided reference genes

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