Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.9e-228 795.4 382 100.0
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 1.2e-198 696.4 335 99.4
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 1.7e-197 692.6 335 98.5
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 8.9e-186 653.7 386 81.1
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 3.2e-183 645.2 386 80.3
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 1.0e-181 640.2 350 87.4
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 3.3e-180 635.2 386 79.3
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 3.6e-179 631.7 335 89.3
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 4.7e-179 631.3 381 80.1
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 6.2e-179 630.9 335 89.0
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 8.3e-176 620.5 362 83.1
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 9.2e-175 617.1 360 82.8
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 2.3e-173 612.5 385 78.7
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 1.7e-165 586.3 332 82.2
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 1.1e-162 577.0 372 74.7
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 2.4e-162 575.9 331 80.1
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 9.0e-162 573.9 332 81.0
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 2.9e-160 568.9 379 72.3
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 8.4e-160 567.4 335 78.8
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.4e-159 566.6 372 71.5
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 1.9e-159 566.2 372 72.3
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 3.2e-159 565.5 334 79.3
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 4.2e-159 565.1 334 79.0
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 5.4e-159 564.7 332 79.5
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 7.1e-159 564.3 380 70.3
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 9.3e-159 563.9 372 71.0
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 9.3e-159 563.9 334 78.7
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 1.6e-158 563.1 383 70.8
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 2.1e-158 562.8 372 72.8
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 3.5e-158 562.0 383 70.5
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 4.6e-158 561.6 371 71.7
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 2.3e-157 559.3 385 70.4
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 5.1e-157 558.1 332 78.0
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 1.1e-156 557.0 372 72.3
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.1e-156 557.0 331 77.3
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 1.4e-154 550.1 381 69.6
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 1.4e-154 550.1 332 77.7
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.8e-154 549.7 380 70.8
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 4.0e-154 548.5 326 77.9
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 5.3e-154 548.1 380 70.8
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 5.3e-154 548.1 334 78.1
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 6.9e-154 547.7 380 70.5
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 1.5e-153 546.6 380 69.5
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 2.0e-153 546.2 332 75.6
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 2.6e-153 545.8 390 69.0
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 9.9e-153 543.9 332 78.3
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.3e-152 543.5 372 70.2
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 4.9e-152 541.6 335 75.5
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 1.1e-151 540.4 334 76.9
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 2.4e-151 539.3 332 75.0
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 4.2e-151 538.5 332 75.9
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 7.1e-151 537.7 341 74.2
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 9.3e-151 537.3 335 74.9
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 9.3e-151 537.3 335 75.5
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 2.1e-150 536.2 335 74.6
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 1.3e-149 533.5 332 77.4
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 2.3e-149 532.7 332 74.7
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 8.7e-149 530.8 332 76.5
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 2.5e-148 529.3 332 74.1
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 3.3e-148 528.9 332 74.1
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 4.3e-148 528.5 332 74.1
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 1.4e-146 523.5 332 74.1
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 4.0e-146 521.9 332 72.9
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 5.3e-146 521.5 380 67.4
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 6.9e-146 521.2 332 73.5
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 9.0e-146 520.8 332 72.6
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 1.5e-145 520.0 357 69.7
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 2.0e-145 519.6 333 73.6
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 4.5e-145 518.5 332 73.5
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 5.8e-145 518.1 389 66.3
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 7.6e-145 517.7 335 73.4
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 4.9e-144 515.0 373 67.0
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 8.4e-144 514.2 344 71.2
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 8.4e-144 514.2 341 74.2
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 2.5e-143 512.7 329 72.0
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 1.6e-142 510.0 367 68.9
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 2.1e-142 509.6 338 69.5
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.7e-142 509.2 339 70.2
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 3.5e-142 508.8 334 72.2
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 7.9e-142 507.7 336 69.3
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 2.3e-141 506.1 334 71.3
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 8.7e-141 504.2 364 66.8
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 4.3e-140 501.9 294 80.6
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 9.6e-140 500.7 393 62.6
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 3.7e-139 498.8 400 63.8
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.8e-138 496.5 359 66.6
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 5.3e-138 495.0 384 63.3
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 3.4e-137 492.3 318 72.0
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 5.0e-136 488.4 362 66.6
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 5.7e-132 474.9 328 72.3
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 2.2e-131 473.0 305 73.8
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 3.1e-130 469.2 326 69.3
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 1.4e-127 460.3 281 77.6
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 7.9e-126 454.5 297 71.4
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 1.4e-125 453.8 332 67.2
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.1e-122 444.1 340 66.5
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 4.5e-121 438.7 342 64.3
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 1.3e-120 437.2 377 58.6
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.4e-119 433.7 324 65.1
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 6.1e-118 428.3 324 64.5
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 1.0e-112 411.0 339 58.4
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 1.4e-109 400.6 209 92.3
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 1.2e-102 377.5 347 57.6
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 3.5e-97 359.4 231 74.9
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 1.7e-96 357.1 385 50.4
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 2.3e-93 346.7 213 75.1
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 6.8e-93 345.1 380 50.0
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.5e-87 327.4 219 71.7
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 7.5e-84 315.1 374 44.9
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 1.4e-82 310.8 342 47.7
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 1.9e-79 300.4 378 44.2
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 2.6e-76 290.0 172 82.0
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 8.3e-75 285.0 178 78.1
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 2.4e-74 283.5 276 55.8
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 8.6e-72 275.0 279 47.0
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 7.5e-68 261.9 175 69.1
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 9.5e-63 245.0 133 84.2
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 1.7e-56 224.2 295 44.4
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 1.2e-54 218.0 171 59.6
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 4.0e-53 213.0 171 58.5
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.3e-51 208.0 176 56.8
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 1.1e-50 204.9 126 75.4
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 3.6e-46 189.9 124 67.7
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 9.3e-42 175.3 241 44.0
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 3.3e-39 166.8 96 81.2
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 4.5e-36 156.4 100 76.0
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 1.2e-33 148.3 88 75.0
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.3e-31 140.2 223 41.7
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 1.6e-30 137.9 159 50.3
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 9.0e-29 132.1 75 82.7
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 4.6e-25 119.8 368 31.2
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 1.4e-21 108.2 67 77.6
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 4.5e-20 103.2 123 45.5
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 2.3e-16 90.9 69 62.3
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 2.8e-14 84.0 71 62.0
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 6.3e-14 82.8 63 63.5
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 1.5e-12 78.2 51 70.6
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 3.8e-11 73.6 81 42.0
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 4.6e-09 66.6 38 76.3
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 5.1e-08 63.2 39 69.2
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 1.7e-06 58.2 46 56.5
CAN.G1236.5 Capsicum annuum HOM05D001621 ORTHO05D013110 4.8e-06 56.6 36 72.2
CAN.G140.11 Capsicum annuum HOM05D001621 ORTHO05D013110 4.8e-06 56.6 36 72.2
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 6.3e-06 56.2 49 59.2


User provided reference genes

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