Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 0.0e+00 1107.4 569 100.0
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 1.8e-291 1005.4 571 90.5
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 5.1e-254 880.9 592 76.9
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 3.8e-249 864.8 573 78.0
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 6.5e-249 864.0 574 76.5
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 6.7e-246 854.0 573 75.4
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 1.5e-245 852.8 573 76.1
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 9.0e-243 843.6 573 75.6
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 1.7e-241 839.3 602 71.3
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 8.5e-241 837.0 573 75.7
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 6.7e-238 827.4 574 73.7
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 9.7e-229 797.0 570 71.4
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 8.5e-217 757.3 515 75.1
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 2.8e-212 742.3 574 64.3
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 3.1e-211 738.8 574 64.1
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 1.2e-210 736.9 575 66.3
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 4.5e-210 734.9 576 65.1
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 1.0e-209 733.8 574 63.8
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 1.3e-209 733.4 575 64.9
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 6.5e-209 731.1 575 65.4
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 4.7e-207 724.9 574 63.6
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 2.0e-205 719.5 574 63.8
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 7.5e-205 717.6 584 64.6
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 1.1e-203 713.8 574 63.4
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 1.4e-203 713.4 575 64.2
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 3.1e-203 712.2 576 63.9
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 7.0e-203 711.1 574 64.1
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 2.0e-202 709.5 577 63.8
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 4.5e-202 708.4 574 64.3
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 1.3e-201 706.8 574 63.2
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.7e-201 706.4 576 62.7
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 3.8e-201 705.3 576 63.5
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 5.0e-201 704.9 576 62.5
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 1.5e-200 703.4 576 62.3
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 1.8e-198 696.4 575 62.4
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.0e-198 695.3 576 61.6
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 8.8e-198 694.1 576 62.3
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 1.7e-196 689.9 575 61.7
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 1.7e-196 689.9 573 62.0
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 1.8e-195 686.4 574 61.1
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 4.1e-195 685.3 570 62.3
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 7.0e-195 684.5 574 61.3
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 2.0e-194 682.9 575 61.7
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 2.7e-194 682.6 566 62.2
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 2.7e-194 682.6 575 61.0
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 4.5e-194 681.8 574 60.8
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 1.0e-193 680.6 576 61.3
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 2.3e-193 679.5 574 61.7
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 2.3e-193 679.5 575 60.2
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 6.6e-193 677.9 577 60.5
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 4.3e-192 675.2 574 59.9
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 8.0e-191 671.0 577 61.2
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 3.0e-190 669.1 575 58.3
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 3.4e-189 665.6 575 61.7
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 7.0e-187 657.9 574 58.2
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 9.2e-187 657.5 576 57.5
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 3.9e-185 652.1 574 58.2
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 5.0e-185 651.7 576 58.3
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 7.3e-184 647.9 603 56.4
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 2.8e-183 646.0 576 58.0
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 3.6e-183 645.6 577 56.5
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 1.2e-181 640.6 577 57.5
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 1.5e-181 640.2 577 56.5
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 2.0e-181 639.8 575 57.6
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 2.0e-181 639.8 574 57.7
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 3.4e-181 639.0 577 58.4
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 5.8e-181 638.3 579 57.7
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 7.5e-181 637.9 576 56.9
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 1.7e-180 636.7 576 57.1
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 4.9e-180 635.2 577 57.9
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 8.3e-180 634.4 576 57.1
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 8.1e-175 617.8 575 56.5
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 1.6e-170 603.6 578 55.7
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 2.7e-170 602.8 599 54.1
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 5.6e-168 595.1 645 50.5
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 4.7e-167 592.0 575 54.3
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 4.7e-167 592.0 575 54.3
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 6.2e-167 591.7 577 53.0
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 1.1e-166 590.9 517 58.8
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 1.4e-166 590.5 516 60.5
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.4e-166 590.5 576 53.8
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 9.9e-165 584.3 551 55.5
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 2.9e-164 582.8 572 53.5
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 2.9e-164 582.8 572 53.5
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 6.4e-164 581.6 572 53.3
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 9.2e-163 577.8 497 60.8
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 2.7e-162 576.2 553 54.4
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 7.3e-160 568.2 502 59.6
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 3.6e-159 565.8 574 51.0
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 1.7e-156 557.0 546 54.0
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 5.4e-155 552.0 475 60.4
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 1.6e-151 540.4 680 46.5
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 3.6e-151 539.3 428 64.7
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 1.2e-149 534.3 423 65.5
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 6.7e-145 518.5 442 60.9
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 3.3e-144 516.2 393 64.9
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 6.5e-132 475.3 498 53.6
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 1.1e-128 464.5 553 45.0
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 1.3e-127 461.1 392 58.9
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.4e-126 456.8 573 45.9
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.6e-122 444.1 471 52.7
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 1.1e-118 431.4 462 50.4
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.5e-117 426.0 392 57.9
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 5.5e-115 419.1 354 61.6
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 7.7e-109 398.7 601 38.9
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 2.8e-103 380.2 598 39.6
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.1e-102 376.7 475 46.5
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 5.5e-99 365.9 569 40.8
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 1.2e-98 364.8 304 61.8
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 1.5e-64 251.5 381 42.8
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 3.9e-60 236.9 245 50.2
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 6.0e-53 213.0 527 31.3
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 4.0e-49 200.3 218 54.1
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 1.5e-48 198.4 277 44.8
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 9.9e-48 195.7 212 51.9
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 3.9e-44 183.7 158 58.2
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 1.2e-42 178.7 119 73.9
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 2.8e-42 177.6 400 35.0
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 5.6e-35 153.3 99 75.8
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 3.4e-32 144.1 90 76.7
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 6.4e-31 139.8 122 54.1
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 5.4e-30 136.7 150 52.0
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 5.6e-27 126.7 462 24.0
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 6.9e-25 119.8 411 26.0
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 3.8e-23 114.0 74 70.3
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 1.9e-19 101.7 97 54.6
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 1.9e-19 101.7 97 54.6
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 3.3e-19 100.9 338 24.6
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.6e-18 98.6 73 72.6
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 1.7e-15 88.6 260 29.6
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 8.4e-15 86.3 70 52.9
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.2e-13 82.4 82 54.9
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 2.1e-13 81.6 52 75.0
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.3e-12 79.0 82 54.9
arahy.Tifrunner.gnm1.ann1.SHY03S Arachis hypogaea HOM05D005552 ORTHO05D006743 1.2e-08 65.9 81 50.6
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 3.4e-08 64.3 45 68.9
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 7.7e-08 63.2 51 60.8
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 1.3e-07 62.4 91 38.5


User provided reference genes

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