Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1420.6 698 100.0
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1321.2 694 92.5
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1310.0 693 91.6
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1308.5 693 91.8
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1305.0 693 91.1
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1302.7 693 89.8
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1302.3 693 90.8
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1302.0 693 89.8
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1300.8 693 90.6
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1297.3 693 90.3
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1286.2 694 89.8
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1280.0 693 89.3
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1271.1 693 88.9
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1223.4 694 84.3
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1217.6 694 83.9
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1214.1 699 83.5
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1211.4 694 82.7
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1211.1 694 84.1
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1204.5 693 83.0
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1198.0 694 82.7
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1194.5 692 82.2
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1189.9 694 81.6
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1189.5 695 82.9
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1186.4 693 81.2
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1185.6 695 82.4
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1185.2 699 81.1
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1184.9 694 82.4
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1183.7 694 80.5
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1182.5 692 81.2
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1182.2 699 82.0
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1181.8 695 81.4
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1181.4 695 82.0
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1181.0 694 80.7
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1180.2 697 81.1
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1178.7 697 81.1
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1177.2 697 79.9
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1176.0 695 80.7
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1174.8 695 79.9
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1172.5 691 81.2
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1170.2 671 82.9
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1166.0 694 79.8
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1165.2 699 80.7
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1164.1 694 79.5
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1163.7 694 79.0
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1160.6 697 79.9
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1159.4 694 79.7
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1155.2 719 78.0
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1153.3 698 79.7
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 691 79.5
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 693 81.1
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1150.2 693 79.9
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1149.4 694 79.3
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1149.0 694 79.5
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1147.9 694 79.1
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1147.5 702 78.6
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1146.3 694 79.0
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1142.9 695 78.7
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1142.9 694 79.3
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1141.7 696 78.3
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1141.7 695 79.0
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1141.7 697 79.3
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 694 78.1
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1137.9 699 79.3
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1137.9 695 77.1
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1137.9 694 79.0
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1137.5 696 78.7
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1136.3 694 78.8
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1135.2 694 78.7
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1134.8 694 77.8
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1129.4 695 77.1
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1128.6 694 78.5
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1125.9 695 76.4
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1125.5 696 76.4
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1124.8 692 78.2
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1122.1 695 77.6
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1119.8 697 76.5
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1117.8 697 76.5
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1117.1 695 75.7
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1115.9 694 78.0
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1103.2 718 75.6
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1102.0 699 77.4
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1101.3 693 75.0
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1098.6 692 77.2
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1098.2 694 76.2
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1096.3 680 77.4
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1095.5 680 77.4
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1093.6 747 71.9
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1092.8 647 81.0
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1088.9 740 74.1
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1086.6 694 74.6
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1080.9 719 72.2
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1080.5 719 73.4
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 4.8e-312 1074.7 611 83.5
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 1.2e-310 1069.3 695 75.5
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 1.8e-309 1065.4 700 73.7
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 1.2e-308 1062.8 697 75.8
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.8e-302 1041.6 675 73.6
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 1.3e-299 1032.7 694 73.9
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.3e-296 1022.7 581 83.6
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 8.6e-296 1020.0 701 71.8
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 2.4e-293 1011.9 707 70.3
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 7.8e-289 996.9 696 69.8
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 1.6e-278 962.6 638 74.8
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 5.5e-266 921.0 539 81.4
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.7e-259 899.4 581 74.4
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 3.8e-259 898.3 708 66.1
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 2.4e-237 825.9 699 58.8
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.2e-233 813.5 538 73.8
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 9.7e-223 777.3 698 55.3
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.8e-222 775.0 703 56.8
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.8e-222 775.0 703 56.8
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.1e-221 773.9 470 79.4
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.2e-220 770.4 712 56.0
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 7.0e-213 744.6 704 54.0
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 1.3e-211 740.3 710 55.5
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.8e-184 650.2 386 79.5
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 3.4e-159 566.2 719 44.2
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 3.2e-149 533.1 377 70.6
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 9.0e-136 488.4 504 53.8
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 6.5e-110 402.5 248 79.4
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 1.3e-105 388.3 764 35.3
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 5.9e-103 379.4 815 32.6
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.4e-96 358.2 268 66.4
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 4.1e-96 356.7 323 57.3
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.2e-74 285.4 247 60.3
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 3.4e-74 283.9 251 59.8
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 9.8e-74 282.3 179 73.7
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 1.2e-71 275.4 184 71.7
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 1.8e-67 261.5 165 75.8
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 3.2e-64 250.8 609 32.3
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 1.4e-59 235.3 235 54.5
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.1e-48 199.1 125 73.6
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 1.4e-43 182.2 138 71.0
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 2.4e-40 171.4 144 63.2
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 2.4e-35 154.8 97 75.3
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 5.5e-32 143.7 216 41.7
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 4.3e-29 134.0 75 81.3
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 4.3e-29 134.0 76 81.6
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 1.7e-25 122.1 84 67.9
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 1.7e-17 95.5 86 51.2
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 3.2e-16 91.3 87 55.2
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 3.7e-12 77.8 50 72.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 3.1e-11 74.7 50 66.0


User provided reference genes

Program Settings