Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 0.0e+00 1607.8 837 100.0
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 3.3e-286 988.4 865 67.6
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 3.5e-275 951.8 867 66.7
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 9.8e-270 933.7 862 64.5
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 8.6e-266 920.6 867 63.4
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 5.2e-263 911.4 851 63.5
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 5.0e-258 894.8 862 63.8
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 4.3e-249 865.1 856 62.5
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 4.7e-248 861.7 850 62.7
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 3.9e-242 842.0 852 61.6
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 1.2e-232 810.4 869 58.0
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 5.4e-228 795.0 849 59.6
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 2.0e-158 563.9 856 47.9
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 1.6e-147 527.7 851 46.8
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 1.6e-139 501.1 849 45.5
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 8.0e-139 498.8 855 44.7
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 4.9e-136 489.6 486 61.1
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 5.4e-127 459.5 851 42.2
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 1.3e-125 454.9 869 41.5
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 1.7e-120 438.0 857 39.7
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 1.2e-118 431.8 870 40.5
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 4.3e-116 423.3 835 40.7
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 8.1e-115 419.1 883 37.9
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 1.1e-114 418.7 870 38.4
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 8.4e-112 409.1 886 38.7
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 1.1e-111 408.7 866 38.8
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 5.4e-111 406.4 870 37.8
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 2.1e-110 404.4 852 39.2
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 2.3e-109 401.0 902 36.8
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 1.2e-105 388.7 872 36.7
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.7e-104 384.8 904 36.4
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 6.4e-104 382.9 920 35.5
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 4.2e-103 380.2 913 37.1
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 3.3e-100 370.5 908 36.0
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.4e-98 365.2 861 35.4
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 5.3e-98 363.2 884 34.8
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 2.6e-97 360.9 923 34.5
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 7.6e-97 359.4 924 34.6
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.3e-96 358.6 864 35.1
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 1.3e-96 358.6 852 37.8
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 1.7e-96 358.2 890 36.1
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 1.9e-95 354.8 909 34.5
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.7e-94 350.9 917 34.1
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 6.7e-93 346.3 902 36.0
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 1.1e-92 345.5 934 33.7
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 5.6e-92 343.2 871 34.6
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 5.5e-87 326.6 984 32.2
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 2.1e-86 324.7 912 33.4
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 2.5e-84 317.8 900 34.4
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 2.9e-80 304.3 703 36.6
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 8.4e-80 302.8 847 32.1
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 1.4e-79 302.0 847 32.1
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 5.5e-79 300.1 920 32.4
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 1.1e-76 292.4 884 30.5
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.2e-73 282.3 1022 29.5
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 2.6e-73 281.2 904 30.3
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 1.3e-72 278.9 1033 29.4
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 6.5e-72 276.6 876 32.0
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 8.5e-72 276.2 902 32.3
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.3e-69 268.1 978 28.7
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 3.9e-69 267.3 977 28.6
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.5e-68 265.4 594 39.6
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 8.2e-67 259.6 855 30.5
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 1.2e-65 255.8 909 30.9
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 1.5e-65 255.4 855 31.1
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 4.5e-65 253.8 877 30.4
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 1.8e-61 241.9 893 29.9
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 9.7e-60 236.1 859 29.8
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 2.2e-59 235.0 945 29.1
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 1.4e-58 232.3 888 28.3
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 5.3e-58 230.3 855 29.5
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 7.0e-58 229.9 870 29.2
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 6.5e-56 223.4 834 29.6
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 2.5e-55 221.5 312 51.3
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 3.2e-55 221.1 883 27.5
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 2.1e-54 218.4 690 31.2
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.0e-53 216.1 866 27.5
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 6.7e-53 213.4 943 28.4
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 4.4e-52 210.7 946 28.3
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 3.7e-51 207.6 886 27.2
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 6.3e-51 206.8 876 29.2
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 3.1e-50 204.5 612 30.6
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 9.1e-50 203.0 913 28.9
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 9.1e-50 203.0 883 27.0
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.3e-48 199.1 879 28.2
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 2.9e-48 198.0 931 27.4
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 1.1e-47 196.1 912 26.9
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 6.1e-46 190.3 584 29.8
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 1.8e-45 188.7 888 27.1
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 4.0e-45 187.6 871 25.8
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 2.6e-44 184.9 759 27.3
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 9.7e-44 183.0 909 26.8
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 1.7e-43 182.2 855 27.0
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 2.7e-41 174.9 847 26.7
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 7.7e-41 173.3 847 27.2
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 3.8e-40 171.0 742 29.5
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.1e-39 169.5 946 27.9
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 2.0e-33 148.7 913 25.5
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 3.5e-33 147.9 443 30.7
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 4.5e-33 147.5 846 27.8
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 3.8e-32 144.4 888 26.1
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 6.6e-32 143.7 620 30.6
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 9.5e-31 139.8 218 38.1
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 1.6e-30 139.0 849 25.4
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 3.6e-30 137.9 148 54.1
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 4.7e-30 137.5 859 24.2
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 6.1e-30 137.1 578 27.9
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 8.0e-30 136.7 854 25.3
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 2.3e-29 135.2 690 27.2
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 4.4e-28 131.0 772 26.4
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 6.3e-27 127.1 152 48.0
Lalb_Chr16g0388151 Lupinus albus HOM05D005593 ORTHO05D006515 1.4e-26 125.9 218 44.5
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 4.1e-26 124.4 166 43.4
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 2.0e-25 122.1 854 24.6
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 1.3e-24 119.4 855 24.1
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 2.3e-24 118.6 626 27.8
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 2.9e-24 118.2 298 33.6
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 8.6e-24 116.7 165 40.6
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 1.1e-23 116.3 862 24.4
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 1.5e-23 115.9 858 24.5
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 2.5e-23 115.2 858 23.8
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 2.3e-21 108.6 857 23.5
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 5.2e-21 107.5 855 23.0
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 8.9e-21 106.7 853 23.1
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 1.2e-20 106.3 315 32.1
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.4e-20 104.8 198 34.3
Rhsim01G0099800 Rhododendron simsii HOM05D005593 ORTHO05D006515 5.4e-18 97.4 417 29.7
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 5.4e-18 97.4 848 24.2
Os01g0228800 Oryza sativa ssp. japonica HOM05D042755 ORTHO05D006515 1.2e-17 96.3 786 23.0
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 6.6e-16 90.5 506 27.1
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 3.3e-15 88.2 784 22.7
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 4.3e-15 87.8 295 32.2
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 1.2e-14 86.3 965 21.8
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 4.7e-14 84.3 903 22.9
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 2.3e-13 82.0 902 22.5
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 3.1e-13 81.6 841 21.5
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 6.8e-13 80.5 860 22.6
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 2.0e-12 79.0 851 21.6
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 3.4e-12 78.2 649 24.5
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 3.4e-12 78.2 860 22.3
CDE02G1606 Ceratophyllum demersum HOM05D005593 ORTHO05D006515 2.9e-11 75.1 200 29.5
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 6.4e-11 73.9 838 22.2
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 6.4e-11 73.9 943 20.8
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 4.1e-10 71.2 181 29.3
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 5.4e-10 70.9 223 29.6
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 2.1e-09 68.9 184 31.0
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 2.7e-09 68.6 282 27.7
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 3.5e-09 68.2 906 21.9
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 4.6e-09 67.8 194 29.9
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 6.0e-09 67.4 933 22.1
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 7.8e-09 67.0 881 22.6
HPP92_023926 Vanilla planifolia HOM05D005593 ORTHO05D006515 1.0e-08 66.6 132 40.9
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.3e-08 66.2 269 27.9
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 1.3e-08 66.2 199 30.2
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 1.3e-08 66.2 933 21.7
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 3.0e-08 65.1 437 24.3
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 3.0e-08 65.1 221 29.0
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 3.9e-08 64.7 204 28.9
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 6.6e-08 63.9 859 21.7
Cfa005599 Carpinus fangiana HOM05D005593 ORTHO05D006515 8.6e-08 63.5 55 58.2
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 8.6e-08 63.5 262 26.3
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 1.5e-07 62.8 832 21.6
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 1.5e-07 62.8 427 22.5
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 1.9e-07 62.4 231 29.0
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 1.9e-07 62.4 875 22.6
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 2.5e-07 62.0 250 26.0
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 2.5e-07 62.0 195 29.7
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 3.3e-07 61.6 891 21.0
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 7.3e-07 60.5 222 30.2
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 9.5e-07 60.1 945 21.7
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 1.6e-06 59.3 991 21.3
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 2.1e-06 58.9 964 21.0
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 2.1e-06 58.9 950 22.3
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 6.2e-06 57.4 922 21.4
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 6.2e-06 57.4 270 27.4
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 8.1e-06 57.0 205 29.3
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 8.1e-06 57.0 232 26.7


User provided reference genes

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