Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0009988 Lotus japonicus HOM05D008003 ORTHO05D010079 3.0e-96 355.1 178 100.0
Lalb_Chr14g0370901 Lupinus albus HOM05D008003 ORTHO05D010079 1.0e-59 233.8 181 68.5
TPR.G12880 Trifolium pratense HOM05D008003 ORTHO05D010079 3.9e-59 231.9 178 66.9
Medtr8g106450 Medicago truncatula HOM05D008003 ORTHO05D010079 3.3e-58 228.8 178 66.9
Glyma.05G242100 Glycine max HOM05D008003 ORTHO05D010079 2.1e-57 226.1 180 64.4
Ca_17236_v3 Cicer arietinum L. HOM05D008003 ORTHO05D010079 5.3e-56 221.5 177 64.4
Thecc.08G020300 Theobroma cacao HOM05D008003 ORTHO05D010079 1.5e-55 219.9 180 65.0
Gohir.D05G200500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 2.9e-54 215.7 181 60.2
Gorai.009G205800 Gossypium raimondii HOM05D008003 ORTHO05D010079 2.9e-54 215.7 181 60.2
Duzib116G0363 Durio zibethinus HOM05D008003 ORTHO05D010079 1.9e-53 213.0 181 63.0
QL02p007150 Quercus lobata HOM05D008003 ORTHO05D010079 1.6e-52 209.9 186 61.8
Nn5g29446 Nelumbo nucifera HOM05D008003 ORTHO05D010079 2.7e-52 209.1 181 59.1
Haze_17611 Corylus avellana HOM05D008003 ORTHO05D010079 3.5e-52 208.8 182 61.5
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 4.6e-52 208.4 172 64.5
Cfa018459 Carpinus fangiana HOM05D008003 ORTHO05D010079 1.8e-51 206.5 181 60.8
Hma1.2p1_0260F.1_g104350 Hydrangea macrophylla HOM05D008003 ORTHO05D010079 2.3e-51 206.1 178 58.4
Aqoxy5G01740 Aquilegia oxysepala HOM05D008003 ORTHO05D010079 1.1e-50 203.8 180 58.9
Atru.chr13.573 Acer truncatum HOM05D008003 ORTHO05D010079 2.5e-50 202.6 186 57.5
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 3.3e-50 202.2 175 59.4
FvH4_2g26081 Fragaria vesca HOM05D008003 ORTHO05D010079 5.6e-50 201.4 176 61.4
Duzib116G0025 Durio zibethinus HOM05D008003 ORTHO05D010079 1.3e-49 200.3 176 60.8
Manes.05G165700 Manihot esculenta HOM05D008003 ORTHO05D010079 8.1e-49 197.6 178 58.4
Phvul.002G325500 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 8.1e-49 197.6 172 57.0
Nitab4.5_0003884g0080 Nicotiana tabacum HOM05D008003 ORTHO05D010079 1.4e-48 196.8 182 57.7
Phvul.002G325400 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 3.1e-48 195.7 176 56.2
RcHm_v2.0_Chr6g0294451 Rosa chinensis HOM05D008003 ORTHO05D010079 3.1e-48 195.7 176 60.8
Medtr8g106405 Medicago truncatula HOM05D008003 ORTHO05D010079 1.2e-47 193.7 150 64.0
Potri.002G131500 Populus trichocarpa HOM05D008003 ORTHO05D010079 2.6e-47 192.6 176 59.7
VMungo0251G2996 Vigna mungo HOM05D008003 ORTHO05D010079 4.5e-47 191.8 168 56.0
CANSAT56G3107 Cannabis sativa HOM05D008003 ORTHO05D010079 5.8e-47 191.4 187 57.2
CiPaw.16G052800 Carya illinoinensis HOM05D008003 ORTHO05D010079 9.9e-47 190.7 184 57.1
MD11G1306400 Malus domestica HOM05D008003 ORTHO05D010079 9.9e-47 190.7 192 55.2
PSO170G4120 Papaver somniferum HOM05D008003 ORTHO05D010079 2.2e-46 189.5 184 54.9
Ciclev10002654m.g Citrus clementina HOM05D008003 ORTHO05D010079 2.9e-46 189.1 177 57.6
MBI16_g13167_MAGBIO Magnolia biondii HOM05D008003 ORTHO05D010079 3.8e-46 188.7 183 53.0
PGR031G0927 Punica granatum HOM05D008003 ORTHO05D010079 6.4e-46 188.0 183 54.6
Sabra02G0103400 Salix brachista HOM05D008003 ORTHO05D010079 1.1e-45 187.2 168 60.7
Peaxi162Scf00337g00617 Petunia axillaris HOM05D008003 ORTHO05D010079 4.2e-45 185.3 174 56.3
Prupe.8G265000 Prunus persica HOM05D008003 ORTHO05D010079 4.2e-45 185.3 184 57.6
SGA_v2.0_scaffold33G13535 Striga asiatica HOM05D008003 ORTHO05D010079 4.2e-45 185.3 180 56.7
Cpa.g.sc64.35 Carica papaya HOM05D008003 ORTHO05D010079 1.2e-44 183.7 168 55.4
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 1.2e-44 183.7 183 54.1
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 1.6e-44 183.3 184 54.3
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 2.1e-44 183.0 175 57.7
HanXRQChr02g0045861 Helianthus annuus HOM05D008003 ORTHO05D010079 2.1e-44 183.0 177 53.7
Sed0001684 Sechium edule HOM05D008003 ORTHO05D010079 2.7e-44 182.6 176 54.5
arahy.Tifrunner.gnm1.ann1.M7IFVU Arachis hypogaea HOM05D008003 ORTHO05D010079 6.0e-44 181.4 208 56.2
PSO700G0197 Papaver somniferum HOM05D008003 ORTHO05D010079 6.0e-44 181.4 184 52.7
Gohir.A05G197500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 1.0e-43 180.6 138 63.0
TWI36G0609 Tripterygium wilfordii HOM05D008003 ORTHO05D010079 3.0e-43 179.1 187 54.0
MD03G1292000 Malus domestica HOM05D008003 ORTHO05D010079 1.5e-42 176.8 192 53.1
Nitab4.5_0012105g0050 Nicotiana tabacum HOM05D008003 ORTHO05D010079 1.6e-41 173.3 168 57.1
CAN.G74.23 Capsicum annuum HOM05D008003 ORTHO05D010079 3.7e-41 172.2 184 51.1
SalBow1G6207 Salvia bowleyana HOM05D008003 ORTHO05D010079 4.8e-41 171.8 173 56.6
Oeu004673.1 Olea europaea HOM05D008003 ORTHO05D010079 6.2e-41 171.4 176 53.4
MELO3C012606.2 Cucumis melo HOM05D008003 ORTHO05D010079 1.4e-40 170.2 177 51.4
Lsat_1_v5_gn_1_19420 Lactuca sativa HOM05D008003 ORTHO05D010079 1.4e-40 170.2 177 51.4
SalBow1G7493 Salvia bowleyana HOM05D008003 ORTHO05D010079 1.4e-40 170.2 173 56.1
AUR62033864 Chenopodium quinoa HOM05D008003 ORTHO05D010079 2.4e-40 169.5 181 53.6
CSS0033209 Camellia sinensis var. sinensis HOM05D008003 ORTHO05D010079 5.3e-40 168.3 183 51.9
Solyc04g008080.1 Solanum lycopersicum HOM05D008003 ORTHO05D010079 2.0e-39 166.4 182 51.6
AUR62040074 Chenopodium quinoa HOM05D008003 ORTHO05D010079 7.6e-39 164.5 167 55.7
CsaV3_7G022920 Cucumis sativus L. HOM05D007284 ORTHO05D009303 4.9e-38 161.8 158 50.6
EL10As22g24222 Beta vulgaris HOM05D008003 ORTHO05D010079 1.1e-37 160.6 181 50.8
ECA247G3275 Erigeron canadensis HOM05D000264 ORTHO05D000152 3.5e-36 155.6 163 51.5
Carub.0008s0637 Capsella rubella HOM05D008003 ORTHO05D010079 2.8e-33 146.0 184 46.2
AT5G42655 Arabidopsis thaliana HOM05D008003 ORTHO05D010079 4.8e-33 145.2 185 47.6
AL8G18550 Arabidopsis lyrata HOM05D008003 ORTHO05D010079 1.8e-32 143.3 185 46.5
ATR0733G062 Amborella trichopoda HOM05D008003 ORTHO05D010079 4.5e-31 138.7 179 43.6
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 2.9e-30 136.0 185 45.4
BcaB07g30606 Brassica carinata HOM05D008003 ORTHO05D010079 6.5e-30 134.8 185 44.3
THA.LOC104803393 Tarenaya hassleriana HOM05D008003 ORTHO05D010079 2.5e-29 132.9 167 49.7
PGSC0003DMG400029513 Solanum tuberosum HOM05D005814 ORTHO05D006821 7.2e-29 131.3 120 56.7
BolC2t10386H Brassica oleracea HOM05D008003 ORTHO05D010079 9.3e-29 131.0 186 42.5
A02p27430 Brassica napus HOM05D008003 ORTHO05D010079 1.6e-28 130.2 186 42.5
BraA02t07771Z Brassica rapa HOM05D008003 ORTHO05D010079 1.6e-28 130.2 186 42.5
Thhalv10019186m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 2.7e-28 129.4 183 42.6
BcaC03g16515 Brassica carinata HOM05D008003 ORTHO05D010079 4.6e-28 128.6 185 42.2
C02p43340 Brassica napus HOM05D008003 ORTHO05D010079 4.6e-28 128.6 185 42.2
Sp2g07120 Schrenkiella parvula HOM05D008003 ORTHO05D010079 1.0e-27 127.5 186 41.9
SEGI_14506 Sequoiadendron giganteum HOM05D008003 ORTHO05D010079 1.4e-24 117.1 187 40.6
Ah.05g169480 Amaranthus hybridus HOM05D008003 ORTHO05D010079 2.5e-21 106.3 156 44.9
Thhalv10003357m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 2.1e-20 103.2 109 49.5
Zm00001eb056600 Zea mays HOM05D008003 ORTHO05D010079 6.3e-17 91.7 171 39.8
CiPaw.05G078800 Carya illinoinensis HOM05D000180 ORTHO05D000099 2.4e-08 63.2 100 38.0
Cc02_g29580 Coffea canephora HOM05D000180 ORTHO05D000099 3.1e-08 62.8 108 37.0
SEGI_15552 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 4.1e-08 62.4 100 37.0
ATR0810G295 Amborella trichopoda HOM05D000180 ORTHO05D000099 1.2e-07 60.8 100 38.0
Cfa005210 Carpinus fangiana HOM05D000180 ORTHO05D000099 2.0e-07 60.1 100 38.0
Nitab4.5_0006333g0020 Nicotiana tabacum HOM05D000180 ORTHO05D000099 2.0e-07 60.1 107 36.4
Haze_22988 Corylus avellana HOM05D000180 ORTHO05D000099 2.6e-07 59.7 111 38.7
Nitab4.5_0014533g0010 Nicotiana tabacum HOM05D000180 ORTHO05D000099 2.6e-07 59.7 109 38.5
Psat5g216680 Pisum sativum HOM05D000180 ORTHO05D000099 3.5e-07 59.3 112 29.5
TAR381G1448 Trochodendron aralioides HOM05D000180 ORTHO05D000099 4.5e-07 58.9 155 32.3
ATR0810G002 Amborella trichopoda HOM05D000180 ORTHO05D000099 5.9e-07 58.5 98 38.8
Nitab4.5_0000321g0020 Nicotiana tabacum HOM05D000180 ORTHO05D000099 5.9e-07 58.5 107 34.6
Nitab4.5_0006639g0100 Nicotiana tabacum HOM05D000180 ORTHO05D000099 5.9e-07 58.5 107 35.5
THA.LOC104819119 Tarenaya hassleriana HOM05D000180 ORTHO05D000099 5.9e-07 58.5 179 33.5
ATR0810G039 Amborella trichopoda HOM05D000180 ORTHO05D000099 7.7e-07 58.2 85 40.0
ATR0810G065 Amborella trichopoda HOM05D000180 ORTHO05D000099 7.7e-07 58.2 100 36.0
Ca_02016_v3 Cicer arietinum L. HOM05D000180 ORTHO05D000099 7.7e-07 58.2 117 35.9
Haze_02185 Corylus avellana HOM05D000180 ORTHO05D000099 7.7e-07 58.2 111 36.9
Migut.J01187 Erythranthe guttata HOM05D000180 ORTHO05D000099 7.7e-07 58.2 115 35.7
DCAR_022776 Daucus carota HOM05D000180 ORTHO05D000099 1.0e-06 57.8 159 30.8
Oeu006671.1 Olea europaea HOM05D000180 ORTHO05D000099 1.0e-06 57.8 117 30.8
PSO541G1921 Papaver somniferum HOM05D000180 ORTHO05D000099 1.0e-06 57.8 92 42.4
Peaxi162Scf00769g00038 Petunia axillaris HOM05D000180 ORTHO05D000099 1.0e-06 57.8 176 29.5
SGA_v2.0_scaffold207G41896 Striga asiatica HOM05D000180 ORTHO05D000099 1.0e-06 57.8 87 41.4
Ah.13g075610 Amaranthus hybridus HOM05D000180 ORTHO05D000099 1.3e-06 57.4 110 40.9
ATR0810G102 Amborella trichopoda HOM05D000180 ORTHO05D000099 1.3e-06 57.4 100 36.0
Ca_24317_v3 Cicer arietinum L. HOM05D000180 ORTHO05D000099 1.3e-06 57.4 111 29.7
Eucgr.A02220 Eucalyptus grandis HOM05D000180 ORTHO05D000099 1.3e-06 57.4 98 35.7
SEGI_27732 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 1.3e-06 57.4 170 28.8
Cfa009618 Carpinus fangiana HOM05D000180 ORTHO05D000099 1.7e-06 57.0 110 37.3
Eucgr.A02487 Eucalyptus grandis HOM05D000180 ORTHO05D000099 1.7e-06 57.0 100 36.0
PSO541G1182 Papaver somniferum HOM05D000180 ORTHO05D000099 1.7e-06 57.0 116 35.3
PSO675G3710 Papaver somniferum HOM05D000180 ORTHO05D000099 1.7e-06 57.0 110 33.6
QL04p012506 Quercus lobata HOM05D000180 ORTHO05D000099 1.7e-06 57.0 116 35.3
QL04p013648 Quercus lobata HOM05D000180 ORTHO05D000099 1.7e-06 57.0 116 35.3
CAN.G1605.1 Capsicum annuum HOM05D000180 ORTHO05D000099 2.2e-06 56.6 110 35.5
CiPaw.14G005900 Carya illinoinensis HOM05D000180 ORTHO05D000099 2.2e-06 56.6 126 34.9
Cc02_g35990 Coffea canephora HOM05D000180 ORTHO05D000099 2.2e-06 56.6 84 42.9
FvH4_6g42510 Fragaria vesca HOM05D000180 ORTHO05D000099 2.2e-06 56.6 93 33.3
FAN14G5554 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.2e-06 56.6 93 33.3
Glyma.11G150300 Glycine max HOM05D000180 ORTHO05D000099 2.2e-06 56.6 111 29.7
Lalb_Chr04g0263931 Lupinus albus HOM05D000180 ORTHO05D000099 2.2e-06 56.6 126 31.7
PSO675G5682 Papaver somniferum HOM05D000180 ORTHO05D000099 2.2e-06 56.6 116 35.3
PSO675G6564 Papaver somniferum HOM05D000180 ORTHO05D000099 2.2e-06 56.6 101 37.6
TPR.G15112 Trifolium pratense HOM05D000180 ORTHO05D000099 2.2e-06 56.6 112 30.4
COL.COLO4_17289 Corchorus olitorius HOM05D000180 ORTHO05D000099 2.9e-06 56.2 99 34.3
Rhsim07G0062500 Rhododendron simsii HOM05D000180 ORTHO05D000099 2.9e-06 56.2 123 35.0
TPR.G3827 Trifolium pratense HOM05D000180 ORTHO05D000099 2.9e-06 56.2 112 30.4
VMungo1383G3735 Vigna mungo HOM05D000180 ORTHO05D000099 2.9e-06 56.2 79 43.0
Ca_20358_v3 Cicer arietinum L. HOM05D000180 ORTHO05D000099 3.8e-06 55.8 133 34.6
FAN08G3175 Fragaria x ananassa HOM05D001508 ORTHO05D001381 3.8e-06 55.8 151 24.5
FAN14G0740 Fragaria x ananassa HOM05D000180 ORTHO05D000099 3.8e-06 55.8 84 34.5
Oeu063298.1 Olea europaea HOM05D000180 ORTHO05D000099 3.8e-06 55.8 104 39.4
QL11p048553 Quercus lobata HOM05D000180 ORTHO05D000099 3.8e-06 55.8 120 36.7
QL11p049132 Quercus lobata HOM05D000180 ORTHO05D000099 3.8e-06 55.8 120 36.7
Thecc.10G005900 Theobroma cacao HOM05D000180 ORTHO05D000099 3.8e-06 55.8 141 33.3
TAR633G2755 Trochodendron aralioides HOM05D000180 ORTHO05D000099 3.8e-06 55.8 172 28.5
ATR0897G001 Amborella trichopoda HOM05D000180 ORTHO05D000099 5.0e-06 55.5 103 36.9
arahy.Tifrunner.gnm1.ann1.G07C2M Arachis hypogaea HOM05D000180 ORTHO05D000099 5.0e-06 55.5 83 39.8
arahy.Tifrunner.gnm1.ann1.U3CTV6 Arachis hypogaea HOM05D000180 ORTHO05D000099 5.0e-06 55.5 83 39.8
CDE03G0121 Ceratophyllum demersum HOM05D000180 ORTHO05D000099 5.0e-06 55.5 77 44.2
AUR62036507 Chenopodium quinoa HOM05D000013 ORTHO05D000011 5.0e-06 55.5 39 66.7
Cc04_g12480 Coffea canephora HOM05D000180 ORTHO05D000099 5.0e-06 55.5 97 30.9
COL.COLO4_25833 Corchorus olitorius HOM05D000180 ORTHO05D000099 5.0e-06 55.5 126 34.1
COL.COLO4_29381 Corchorus olitorius HOM05D000180 ORTHO05D000099 5.0e-06 55.5 80 43.8
Migut.N01310 Erythranthe guttata HOM05D000180 ORTHO05D000099 5.0e-06 55.5 104 35.6
Lj9C390T9 Lonicera japonica HOM05D000180 ORTHO05D000099 5.0e-06 55.5 115 38.3
Lj9C645T25 Lonicera japonica HOM05D000180 ORTHO05D000099 5.0e-06 55.5 111 33.3
Medtr7g093830 Medicago truncatula HOM05D000180 ORTHO05D000099 5.0e-06 55.5 79 41.8
SEGI_32439 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 5.0e-06 55.5 106 31.1
TPR.G20519 Trifolium pratense HOM05D000180 ORTHO05D000099 5.0e-06 55.5 96 35.4
TPR.G5231 Trifolium pratense HOM05D000180 ORTHO05D000099 5.0e-06 55.5 103 35.0
HPP92_001773 Vanilla planifolia HOM05D000180 ORTHO05D000099 5.0e-06 55.5 87 37.9
ATR0810G236 Amborella trichopoda HOM05D000180 ORTHO05D000099 6.5e-06 55.1 101 37.6
Cc04_g12510 Coffea canephora HOM05D000180 ORTHO05D000099 6.5e-06 55.1 96 37.5
DCAR_003710 Daucus carota HOM05D000180 ORTHO05D000099 6.5e-06 55.1 103 35.0
ECA248G2068 Erigeron canadensis HOM05D000180 ORTHO05D000099 6.5e-06 55.1 79 39.2
FvH4_6g42490 Fragaria vesca HOM05D000180 ORTHO05D000099 6.5e-06 55.1 148 27.7
Lalb_Chr25g0282441 Lupinus albus HOM05D000180 ORTHO05D000099 6.5e-06 55.1 97 32.0
Phvul.001G145600 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 6.5e-06 55.1 79 43.0
ATR0810G169 Amborella trichopoda HOM05D000180 ORTHO05D000099 8.5e-06 54.7 100 37.0
EL10Ac3g06867 Beta vulgaris HOM05D000180 ORTHO05D000099 8.5e-06 54.7 98 34.7
Gohir.A11G202100 Gossypium hirsutum HOM05D000180 ORTHO05D000099 8.5e-06 54.7 122 33.6
Gohir.A11G279900 Gossypium hirsutum HOM05D000180 ORTHO05D000099 8.5e-06 54.7 124 32.3
Phvul.005G032400 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 8.5e-06 54.7 104 31.7
PGR004G1159 Punica granatum HOM05D000180 ORTHO05D000099 8.5e-06 54.7 101 35.6
Rhsim07G0062400 Rhododendron simsii HOM05D000180 ORTHO05D000099 8.5e-06 54.7 87 37.9
TPR.G12177 Trifolium pratense HOM05D000180 ORTHO05D000099 8.5e-06 54.7 117 26.5


User provided reference genes

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