Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0009690 Lotus japonicus HOM05D006487 ORTHO05D007982 1.4e-235 819.3 442 100.0
Glyma.09G164600 Glycine max HOM05D006487 ORTHO05D007982 7.7e-157 557.8 450 72.2
Phvul.004G139000 Phaseolus vulgaris HOM05D006487 ORTHO05D007982 2.3e-153 546.2 450 71.8
Psat1g121120 Pisum sativum HOM05D006487 ORTHO05D007982 6.3e-151 538.1 451 69.2
Lalb_Chr22g0353991 Lupinus albus HOM05D006487 ORTHO05D007982 2.0e-149 533.1 449 70.4
Medtr6g077860 Medicago truncatula HOM05D006487 ORTHO05D007982 4.2e-147 525.4 453 70.9
Ca_11836_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 1.2e-144 517.3 449 69.7
Glyma.16G213000 Glycine max HOM05D006487 ORTHO05D007982 6.5e-140 501.5 365 74.5
arahy.Tifrunner.gnm1.ann1.FG107U Arachis hypogaea HOM05D006487 ORTHO05D007982 2.2e-127 459.9 459 63.6
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 2.2e-127 459.9 400 66.5
arahy.Tifrunner.gnm1.ann1.49K0I5 Arachis hypogaea HOM05D006487 ORTHO05D007982 4.9e-127 458.8 460 63.7
TPR.G19888 Trifolium pratense HOM05D006487 ORTHO05D007982 4.0e-121 439.1 371 71.4
TWI81G0553 Tripterygium wilfordii HOM05D006487 ORTHO05D007982 7.6e-104 381.7 452 53.5
Prupe.5G243800 Prunus persica HOM05D006487 ORTHO05D007982 1.1e-102 377.9 473 50.5
CANSAT64G1132 Cannabis sativa HOM05D006487 ORTHO05D007982 3.5e-101 372.9 454 53.1
Dinv03426 Davidia involucrata HOM05D006487 ORTHO05D007982 3.0e-100 369.8 472 51.5
Hma1.2p1_0989F.1_g244820 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 6.6e-100 368.6 459 51.2
Haze_18332 Corylus avellana HOM05D006487 ORTHO05D007982 8.6e-100 368.2 439 53.8
Thecc.05G197400 Theobroma cacao HOM05D006487 ORTHO05D007982 1.5e-99 367.5 440 53.4
Manes.02G218400 Manihot esculenta HOM05D006487 ORTHO05D007982 9.6e-99 364.8 366 58.5
COL.COLO4_24904 Corchorus olitorius HOM05D006487 ORTHO05D007982 4.7e-98 362.5 427 52.2
TAR629G0717 Trochodendron aralioides HOM05D006487 ORTHO05D007982 4.7e-98 362.5 404 55.2
RcHm_v2.0_Chr7g0177071 Rosa chinensis HOM05D006487 ORTHO05D007982 6.8e-97 358.6 480 50.2
Gohir.A08G225300 Gossypium hirsutum HOM05D006487 ORTHO05D007982 1.2e-96 357.8 432 52.3
Sed0005317 Sechium edule HOM05D006487 ORTHO05D007982 2.0e-96 357.1 445 52.4
Potri.004G069400 Populus trichocarpa HOM05D006487 ORTHO05D007982 2.9e-95 353.2 454 50.7
CsaV3_1G007510 Cucumis sativus L. HOM05D006487 ORTHO05D007982 6.4e-95 352.1 463 52.1
FvH4_5g18410 Fragaria vesca HOM05D006487 ORTHO05D007982 8.4e-95 351.7 471 49.5
Actinidia34682 Actinidia chinensis HOM05D006487 ORTHO05D007982 3.0e-92 343.2 419 52.0
Gorai.004G262200 Gossypium raimondii HOM05D006487 ORTHO05D007982 1.1e-91 341.3 449 49.7
Nn4g25081 Nelumbo nucifera HOM05D006487 ORTHO05D007982 9.6e-91 338.2 457 50.1
MELO3C002168.2 Cucumis melo HOM05D006487 ORTHO05D007982 2.1e-90 337.0 469 49.9
Oeu023551.1 Olea europaea HOM05D006487 ORTHO05D007982 1.4e-89 334.3 462 48.1
Gohir.D08G245700 Gossypium hirsutum HOM05D006487 ORTHO05D007982 1.8e-89 334.0 436 50.2
QL10p034099 Quercus lobata HOM05D006487 ORTHO05D007982 9.0e-89 331.6 399 54.6
FAN13G0937 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.5e-88 330.9 445 48.5
DCAR_011682 Daucus carota HOM05D006487 ORTHO05D007982 2.0e-88 330.5 391 54.0
Ciclev10020398m.g Citrus clementina HOM05D006487 ORTHO05D007982 3.4e-88 329.7 405 50.4
Lsat_1_v5_gn_0_10541 Lactuca sativa HOM05D006487 ORTHO05D007982 3.4e-88 329.7 446 48.0
MBI06_g27513_MAGBIO Magnolia biondii HOM05D006487 ORTHO05D007982 2.4e-86 323.6 421 48.0
MD14G1245900 Malus domestica HOM05D006487 ORTHO05D007982 2.7e-85 320.1 474 45.6
FAN08G3399 Fragaria x ananassa HOM05D006487 ORTHO05D007982 7.9e-85 318.5 477 45.9
GSVIVG01027119001 Vitis vinifera HOM05D006487 ORTHO05D007982 1.7e-84 317.4 433 47.6
FAN18G0592 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.1e-83 314.7 360 52.2
PSO063G4419 Papaver somniferum HOM05D006487 ORTHO05D007982 1.1e-83 314.7 428 48.4
Aqoxy3G04297 Aquilegia oxysepala HOM05D006487 ORTHO05D007982 1.9e-83 313.9 446 46.0
PSO782G2052 Papaver somniferum HOM05D006487 ORTHO05D007982 1.9e-83 313.9 462 45.7
Migut.O00267 Erythranthe guttata HOM05D006487 ORTHO05D007982 2.5e-83 313.5 458 44.8
PGR083G2465 Punica granatum HOM05D006487 ORTHO05D007982 2.5e-83 313.5 418 47.8
Sopen03g029330 Solanum pennellii HOM05D006487 ORTHO05D007982 1.3e-82 311.2 443 46.3
SGA_v2.0_scaffold90G27746 Striga asiatica HOM05D006487 ORTHO05D007982 2.8e-82 310.1 456 44.1
PGSC0003DMG400010175 Solanum tuberosum HOM05D006487 ORTHO05D007982 1.4e-81 307.8 444 46.8
AL1G54980 Arabidopsis lyrata HOM05D006487 ORTHO05D007982 1.8e-81 307.4 381 51.2
CAN.G929.21 Capsicum annuum HOM05D006487 ORTHO05D007982 3.1e-81 306.6 444 46.2
HanXRQChr15g0492111 Helianthus annuus HOM05D006487 ORTHO05D007982 5.3e-81 305.8 451 47.0
Nitab4.5_0003040g0090 Nicotiana tabacum HOM05D006487 ORTHO05D007982 6.9e-81 305.4 384 51.6
Sc07g0007560 Simmondsia chinensis HOM05D006487 ORTHO05D007982 2.6e-80 303.5 429 45.9
Nitab4.5_0000782g0060 Nicotiana tabacum HOM05D006487 ORTHO05D007982 5.8e-80 302.4 446 48.2
Atru.chr9.84 Acer truncatum HOM05D006487 ORTHO05D007982 2.9e-79 300.1 250 61.6
MSTRG.23212 Avicennia marina HOM05D006487 ORTHO05D007982 2.9e-79 300.1 424 45.5
Carub.0001s3750 Capsella rubella HOM05D006487 ORTHO05D007982 1.1e-78 298.1 379 48.3
ClCG01G014820 Citrullus lanatus HOM05D006487 ORTHO05D007982 1.1e-78 298.1 257 62.6
Sp1g35330 Schrenkiella parvula HOM05D006487 ORTHO05D007982 9.3e-78 295.0 380 48.2
Thhalv10011620m.g Eutrema salsugineum HOM05D006487 ORTHO05D007982 1.6e-77 294.3 358 50.0
Solyc03g098620.3 Solanum lycopersicum HOM05D006487 ORTHO05D007982 1.6e-77 294.3 412 48.1
AT1G48380 Arabidopsis thaliana HOM05D006487 ORTHO05D007982 2.1e-77 293.9 386 48.7
SalBow5G2999 Salvia bowleyana HOM05D006487 ORTHO05D007982 2.1e-77 293.9 409 46.0
Cpa.g.sc168.16 Carica papaya HOM05D006487 ORTHO05D007982 3.0e-76 290.0 254 59.8
CARHR037990 Cardamine hirsuta HOM05D006487 ORTHO05D007982 5.1e-76 289.3 379 48.8
BcaB04g17434 Brassica carinata HOM05D006487 ORTHO05D007982 1.1e-75 288.1 387 48.1
Peaxi162Scf00171g00242 Petunia axillaris HOM05D006487 ORTHO05D007982 1.5e-75 287.7 410 47.3
Sabra04G0046600 Salix brachista HOM05D006487 ORTHO05D007982 1.9e-75 287.3 455 43.5
AUR62040775 Chenopodium quinoa HOM05D006487 ORTHO05D007982 3.3e-75 286.6 250 62.0
Eucgr.H00648 Eucalyptus grandis HOM05D006487 ORTHO05D007982 9.6e-75 285.0 211 66.4
BcaC07g37138 Brassica carinata HOM05D006487 ORTHO05D007982 6.2e-74 282.3 390 47.4
AUR62033020 Chenopodium quinoa HOM05D006487 ORTHO05D007982 1.1e-73 281.6 372 47.3
Rhsim08G0124800 Rhododendron simsii HOM05D006487 ORTHO05D007982 5.3e-73 279.3 539 41.2
A08p04750 Brassica napus HOM05D006487 ORTHO05D007982 9.0e-73 278.5 394 45.9
BraA08t32504Z Brassica rapa HOM05D006487 ORTHO05D007982 9.0e-73 278.5 394 45.9
C08p05120 Brassica napus HOM05D006487 ORTHO05D007982 1.2e-72 278.1 392 46.4
BolC8t47322H Brassica oleracea HOM05D006487 ORTHO05D007982 1.2e-72 278.1 389 47.8
ATR0618G270 Amborella trichopoda HOM05D006487 ORTHO05D007982 3.4e-72 276.6 428 43.7
Cc04_g08450 Coffea canephora HOM05D006487 ORTHO05D007982 5.8e-72 275.8 446 43.3
THA.LOC104820327 Tarenaya hassleriana HOM05D006487 ORTHO05D007982 3.2e-70 270.0 345 49.0
vmacro17744 Vaccinium macrocarpon HOM05D006487 ORTHO05D007982 7.1e-70 268.9 322 48.1
Prupe.4G244900 Prunus persica HOM05D006487 ORTHO05D007982 2.1e-69 267.3 235 60.0
HPP92_014774 Vanilla planifolia HOM05D006487 ORTHO05D007982 1.9e-67 260.8 437 39.4
CDE04G1004 Ceratophyllum demersum HOM05D006487 ORTHO05D007982 7.4e-67 258.8 376 45.2
EL10Ac8g19478 Beta vulgaris HOM05D006487 ORTHO05D007982 3.7e-66 256.5 349 46.1
Lj9A412T44 Lonicera japonica HOM05D006487 ORTHO05D007982 3.1e-65 253.4 343 47.2
Os07g0172200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 4.2e-62 243.0 377 41.6
CiPaw.16G073400 Carya illinoinensis HOM05D006487 ORTHO05D007982 1.2e-61 241.5 341 50.1
FAN04G2664 Fragaria x ananassa HOM05D006487 ORTHO05D007982 4.6e-61 239.6 447 42.1
Ca_30285_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 6.1e-61 239.2 212 68.4
Hund22367 Selenicereus undatus HOM05D006487 ORTHO05D007982 7.9e-61 238.8 281 51.2
Cfa017861 Carpinus fangiana HOM05D006487 ORTHO05D007982 1.1e-59 235.0 307 53.1
Zm00001eb271770 Zea mays HOM05D006487 ORTHO05D007982 1.6e-58 231.1 426 39.2
SEGI_16734 Sequoiadendron giganteum HOM05D006487 ORTHO05D007982 4.1e-57 226.5 366 39.1
TAR629G1006 Trochodendron aralioides HOM05D006487 ORTHO05D007982 1.5e-51 208.0 129 75.2
Mapoly0080s0074 Marchantia polymorpha HOM05D006487 ORTHO05D007982 8.2e-50 202.2 294 40.1
Pp3c25_9140 Physcomitrium patens HOM05D006487 ORTHO05D007982 3.1e-49 200.3 400 35.8
SMO117G0078 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 2.0e-48 197.6 212 50.0
FAN09G4505 Fragaria x ananassa HOM05D006487 ORTHO05D007982 2.6e-48 197.2 124 75.8
AagrBONN_evm.TU.Sc2ySwM_228.567 Anthoceros agrestis HOM05D006487 ORTHO05D007982 2.9e-47 193.7 259 41.3
FAN09G0815 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.6e-45 188.0 123 74.8
Hma1.2p1_0989F.1_g244830 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 6.1e-45 186.0 174 60.9
Aa31LG10G5380 Aethionema arabicum HOM05D006487 ORTHO05D007982 3.9e-44 183.3 259 45.9
Pp3c5_25480 Physcomitrium patens HOM05D006487 ORTHO05D007982 8.8e-44 182.2 455 32.3
TPR.G27400 Trifolium pratense HOM05D006487 ORTHO05D007982 2.4e-33 147.5 100 77.0
Prupe.2G315400 Prunus persica HOM05D006487 ORTHO05D007982 3.1e-33 147.1 215 46.0
Os06g0730200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 2.5e-30 137.5 119 58.0
Cre13.g576500 Chlamydomonas reinhardtii HOM05D006487 ORTHO05D007982 2.2e-26 124.4 181 37.6
CSS0035874 Camellia sinensis var. sinensis HOM05D006487 ORTHO05D007982 3.6e-21 107.1 240 40.0
MCO12G143 Micromonas commoda HOM05D006487 ORTHO05D007982 2.8e-18 97.4 168 36.9
PRCOL_00006754 Prasinoderma coloniale HOM05D006487 ORTHO05D007982 6.3e-18 96.3 205 32.7
Ah.14g085790 Amaranthus hybridus HOM05D006487 ORTHO05D007982 2.4e-17 94.4 87 57.5
CBR_g34174 Chara braunii HOM05D006487 ORTHO05D007982 2.0e-16 91.3 239 30.1
BcaC05g27591 Brassica carinata HOM05D006487 ORTHO05D007982 1.4e-09 68.6 118 42.4
BcaC05g27879 Brassica carinata HOM05D024450 ORTHO05D007982 2.4e-09 67.8 77 51.9
ECA232G2176 Erigeron canadensis HOM05D006487 ORTHO05D007982 4.1e-09 67.0 277 32.9
arahy.Tifrunner.gnm1.ann1.WZV2A9 Arachis hypogaea HOM05D000452 ORTHO05D000647 8.6e-07 59.3 164 36.0
SMO117G0021 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 9.5e-06 55.8 84 38.1


User provided reference genes

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