Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 2.0e-73 278.9 131 100.0
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 2.8e-30 135.6 97 76.3
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 8.1e-30 134.0 88 78.4
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 1.4e-29 133.3 87 79.3
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 9.0e-29 130.6 97 71.1
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 5.8e-28 127.9 97 70.1
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 5.8e-28 127.9 97 70.1
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 7.6e-28 127.5 97 69.1
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.7e-27 126.3 97 69.1
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 2.2e-27 125.9 97 69.1
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 2.9e-27 125.6 96 69.8
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 3.8e-27 125.2 97 69.1
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.4e-26 123.2 97 69.1
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 6.0e-25 117.9 97 62.9
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 7.9e-25 117.5 97 62.9
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 7.9e-25 117.5 101 60.4
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 1.8e-24 116.3 91 65.9
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 1.1e-23 113.6 91 63.7
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.5e-23 113.2 90 66.7
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 2.5e-23 112.5 92 62.0
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 2.5e-23 112.5 97 62.9
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 3.3e-23 112.1 87 64.4
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 5.6e-23 111.3 118 51.7
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 7.4e-23 110.9 110 56.4
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 7.4e-23 110.9 101 56.4
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 1.3e-22 110.2 92 60.9
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.6e-22 109.8 92 60.9
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.6e-22 109.8 97 59.8
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.8e-22 109.0 91 60.4
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 2.8e-22 109.0 97 59.8
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 3.7e-22 108.6 91 60.4
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 4.8e-22 108.2 97 59.8
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 4.8e-22 108.2 98 58.2
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 4.8e-22 108.2 91 60.4
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 6.2e-22 107.8 97 59.8
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 8.1e-22 107.5 91 60.4
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.1e-21 107.1 86 61.6
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 1.4e-21 106.7 91 60.4
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 1.4e-21 106.7 97 59.8
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 1.4e-21 106.7 86 61.6
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 1.4e-21 106.7 90 62.2
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.8e-21 106.3 97 57.7
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.4e-21 105.9 97 56.7
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 2.4e-21 105.9 97 57.7
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.1e-21 105.5 97 56.7
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.0e-21 105.1 97 56.7
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 5.3e-21 104.8 97 59.8
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 6.9e-21 104.4 69 71.0
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 6.9e-21 104.4 97 57.7
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 9.0e-21 104.0 102 52.9
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.2e-20 103.6 91 58.2
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 1.2e-20 103.6 97 57.7
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.5e-20 103.2 97 56.7
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 1.5e-20 103.2 105 53.3
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.6e-20 102.4 90 57.8
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 4.5e-20 101.7 100 58.0
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 5.8e-20 101.3 105 52.4
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 1.0e-19 100.5 97 57.7
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 1.0e-19 100.5 110 52.7
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.7e-19 99.8 97 55.7
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 2.2e-19 99.4 97 55.7
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 2.9e-19 99.0 97 52.6
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 2.9e-19 99.0 91 53.8
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 2.9e-19 99.0 91 53.8
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 3.8e-19 98.6 93 55.9
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 3.8e-19 98.6 97 56.7
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.8e-19 98.6 97 52.6
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.8e-19 98.6 97 52.6
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 3.8e-19 98.6 75 68.0
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 4.9e-19 98.2 91 54.9
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 6.5e-19 97.8 97 52.6
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 8.4e-19 97.4 91 52.7
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 8.4e-19 97.4 97 55.7
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 8.4e-19 97.4 97 55.7
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 8.4e-19 97.4 97 53.6
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 8.4e-19 97.4 91 52.7
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 1.1e-18 97.1 91 54.9
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 1.9e-18 96.3 69 68.1
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 2.5e-18 95.9 84 58.3
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 3.2e-18 95.5 93 54.8
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 3.2e-18 95.5 97 54.6
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 4.2e-18 95.1 91 54.9
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 4.2e-18 95.1 91 54.9
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 4.2e-18 95.1 84 52.4
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 5.5e-18 94.7 101 52.5
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 5.5e-18 94.7 102 53.9
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 1.2e-17 93.6 78 60.3
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.2e-17 93.6 92 53.3
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.2e-17 93.6 72 69.4
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.6e-17 93.2 93 54.8
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.1e-17 92.8 100 54.0
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 2.7e-17 92.4 97 54.6
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.7e-17 92.4 97 54.6
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 2.7e-17 92.4 91 53.8
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 4.6e-17 91.7 69 63.8
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 4.6e-17 91.7 69 63.8
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 7.9e-17 90.9 91 53.8
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 3.9e-16 88.6 75 58.7
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 6.7e-16 87.8 69 65.2
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 1.1e-15 87.0 75 56.0
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 5.7e-15 84.7 87 52.9
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 5.7e-15 84.7 87 52.9
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 9.6e-15 84.0 97 48.5
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 2.1e-14 82.8 75 54.7
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 6.3e-14 81.3 69 56.5
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 8.2e-14 80.9 97 47.4
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 8.2e-14 80.9 85 49.4
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 2.4e-13 79.3 63 52.4
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 2.6e-12 75.9 78 48.7
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 5.9e-12 74.7 92 45.7
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 5.9e-12 74.7 100 45.0
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 7.6e-12 74.3 92 45.7
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 7.6e-12 74.3 83 48.2
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 1.0e-11 73.9 61 57.4
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 2.2e-11 72.8 75 49.3
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 2.9e-11 72.4 46 76.1
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 1.1e-10 70.5 103 41.7
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.2e-10 68.9 47 66.0
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 3.2e-10 68.9 69 50.7
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 4.2e-10 68.6 69 47.8
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 5.5e-10 68.2 102 47.1
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 7.2e-10 67.8 92 41.3
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.2e-09 67.0 67 52.2
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 1.6e-09 66.6 92 39.1
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 1.6e-09 66.6 61 54.1
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 3.5e-09 65.5 65 52.3
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 4.6e-09 65.1 67 49.3
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 6.1e-09 64.7 64 56.2
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 7.9e-09 64.3 43 69.8
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 2.3e-08 62.8 67 46.3
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 2.3e-08 62.8 64 48.4
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 3.0e-08 62.4 98 38.8
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 1.1e-07 60.5 63 54.0
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 1.5e-07 60.1 45 60.0
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 4.3e-07 58.5 90 36.7
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 7.4e-07 57.8 64 48.4
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 7.4e-07 57.8 92 35.9
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 7.4e-07 57.8 92 35.9
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 7.4e-07 57.8 64 46.9
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 9.7e-07 57.4 67 44.8
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 2.2e-06 56.2 92 35.9
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 2.2e-06 56.2 77 37.7
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 2.8e-06 55.8 98 35.7
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 2.8e-06 55.8 76 38.2
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 4.8e-06 55.1 67 40.3


User provided reference genes

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