Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0009180 Lotus japonicus HOM05D000002 ORTHO05D000001 2.8e-134 481.9 234 100.0
TPR.G5721 Trifolium pratense HOM05D000002 ORTHO05D000001 4.3e-58 228.8 136 85.3
Medtr5g085740 Medicago truncatula HOM05D000002 ORTHO05D000001 2.0e-34 150.2 136 61.0
VMungo1127G0188 Vigna mungo HOM05D000002 ORTHO05D000001 2.2e-25 120.2 164 43.3
ECA234G2692 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.7e-22 110.5 145 44.8
ECA240G1898 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.8e-19 98.2 191 35.1
Nn8g39601 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.4e-18 95.9 133 39.1
THA.LOC104824784 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 4.4e-18 95.9 149 36.2
ECA233G3042 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.7e-18 95.5 146 41.1
Sp4g06215 Schrenkiella parvula HOM05D000002 ORTHO05D000001 4.5e-15 85.9 135 32.6
THA.LOC104818098 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 5.9e-15 85.5 185 33.5
THA.LOC104801935 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 7.7e-15 85.1 142 38.0
Nn1g00402 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.7e-14 84.0 135 37.0
THA.LOC104806172 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 5.0e-14 82.4 156 35.3
THA.LOC104815444 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 5.0e-14 82.4 156 35.3
Sp7g09245 Schrenkiella parvula HOM05D000002 ORTHO05D000001 1.1e-13 81.3 132 37.9
CSS0011046 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-13 80.5 149 33.6
TPR.G27008 Trifolium pratense HOM05D000002 ORTHO05D000001 2.5e-13 80.1 105 42.9
THA.LOC104807052 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 2.8e-12 76.6 146 34.2
THA.LOC109116241 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 2.8e-12 76.6 146 34.2
THA.LOC109116072 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 2.3e-11 73.6 132 34.8
THA.LOC109115967 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.0e-11 73.2 129 36.4
CSS0025864 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.2e-11 72.4 154 33.1
HanXRQChr17g0541481 Helianthus annuus HOM05D000002 ORTHO05D000001 5.2e-11 72.4 148 34.5
Atru.chr2.2580 Acer truncatum HOM05D000002 ORTHO05D000001 8.8e-11 71.6 156 30.8
Sopen05g011750 Solanum pennellii HOM05D000002 ORTHO05D000001 8.8e-11 71.6 149 32.2
THA.LOC104825710 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.2e-10 71.2 128 32.8
Sopen11g003490 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-10 70.9 149 31.5
Hma1.2p1_0682F.1_g202600 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.0e-10 70.5 156 31.4
Peaxi162Scf00063g00071 Petunia axillaris HOM05D000002 ORTHO05D000001 2.0e-10 70.5 129 37.2
CSS0042232 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.7e-10 68.9 155 29.7
CSS0045539 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.7e-10 68.9 155 29.7
Sopen12g023510 Solanum pennellii HOM05D000002 ORTHO05D000001 5.7e-10 68.9 141 33.3
CSS0039053 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.5e-10 68.6 155 29.7
HanXRQChr13g0407151 Helianthus annuus HOM05D000002 ORTHO05D000001 7.5e-10 68.6 138 33.3
THA.LOC104807900 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 9.8e-10 68.2 143 35.0
THA.LOC109115986 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.3e-09 67.8 86 45.3
Peaxi162Scf00006g00121 Petunia axillaris HOM05D000002 ORTHO05D000001 2.8e-09 66.6 115 36.5
C09p04910 Brassica napus HOM05D000984 ORTHO05D021680 3.7e-09 66.2 66 48.5
BolC9t53419H Brassica oleracea HOM05D000984 ORTHO05D021680 3.7e-09 66.2 66 48.5
Peaxi162Scf00136g00193 Petunia axillaris HOM05D000002 ORTHO05D000001 3.7e-09 66.2 134 32.1
Psat2g152960 Pisum sativum HOM05D000002 ORTHO05D000001 3.7e-09 66.2 160 30.0
Psat6g102280 Pisum sativum HOM05D000002 ORTHO05D000001 3.7e-09 66.2 160 30.0
Atru.chr1.2464 Acer truncatum HOM05D000002 ORTHO05D000001 6.3e-09 65.5 90 44.4
Sopen01g012220 Solanum pennellii HOM05D000002 ORTHO05D000001 6.3e-09 65.5 211 26.5
HanXRQChr15g0476521 Helianthus annuus HOM05D000002 ORTHO05D000001 1.4e-08 64.3 148 28.4
Nn2g11549 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.4e-08 64.3 79 44.3
Hma1.2p1_0067F.1_g037120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.4e-08 63.5 152 30.3
Sopen02g010030 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-08 63.5 106 35.8
THA.LOC109116472 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 2.4e-08 63.5 62 54.8
Sopen06g032630 Solanum pennellii HOM05D000002 ORTHO05D000001 3.1e-08 63.2 149 30.9
Peaxi162Scf00168g01729 Petunia axillaris HOM05D000002 ORTHO05D000001 4.1e-08 62.8 121 36.4
Psat5g305960 Pisum sativum HOM05D000002 ORTHO05D000001 4.1e-08 62.8 146 29.5
Sabra18G0120700 Salix brachista HOM05D000002 ORTHO05D000001 7.0e-08 62.0 151 31.1
ECA233G6231 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.2e-08 61.6 148 29.1
ECA234G0762 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.2e-08 61.6 148 29.1
Sopen06g017500 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-08 61.6 137 32.1
THA.LOC104817067 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 9.2e-08 61.6 129 33.3
Atru.chr2.2332 Acer truncatum HOM05D000002 ORTHO05D000001 1.2e-07 61.2 88 35.2
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 1.2e-07 61.2 64 45.3
RcHm_v2.0_Chr7g0190501 Rosa chinensis HOM05D000002 ORTHO05D000001 1.2e-07 61.2 107 36.4
Hma1.2p1_0602F.1_g187610 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.6e-07 60.8 144 33.3
Thhalv10011941m.g Eutrema salsugineum HOM05D000002 ORTHO05D000001 2.0e-07 60.5 69 42.0
Psat7g134120 Pisum sativum HOM05D000002 ORTHO05D000001 2.0e-07 60.5 142 30.3
THA.LOC109116120 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 2.0e-07 60.5 108 34.3
HanXRQChr14g0461191 Helianthus annuus HOM05D000002 ORTHO05D000001 3.5e-07 59.7 145 28.3
SHI23044 Sapria himalayana HOM05D000002 ORTHO05D000001 3.5e-07 59.7 98 38.8
Nitab4.5_0000653g0120 Nicotiana tabacum HOM05D000002 ORTHO05D000001 4.5e-07 59.3 106 34.9
Migut.F01917 Erythranthe guttata HOM05D000002 ORTHO05D000001 7.8e-07 58.5 122 29.5
TAR301G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 7.8e-07 58.5 194 23.7
HanXRQChr03g0078371 Helianthus annuus HOM05D000002 ORTHO05D000001 1.0e-06 58.2 154 28.6
Sp1g37055 Schrenkiella parvula HOM05D000002 ORTHO05D000001 1.3e-06 57.8 143 30.8
Atru.chr3.2494 Acer truncatum HOM05D000002 ORTHO05D000001 2.9e-06 56.6 59 44.1
CAN.G134.31 Capsicum annuum HOM05D000085 ORTHO05D006184 2.9e-06 56.6 184 27.2
Hma1.2p1_0577F.1_g182200 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.9e-06 56.6 147 29.3
ECA248G2841 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.8e-06 56.2 120 34.2
Nn7g37542 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.8e-06 56.2 51 49.0
COL.COLO4_24669 Corchorus olitorius HOM05D014020 ORTHO05D000001 5.0e-06 55.8 134 26.9
ECA232G3568 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.0e-06 55.8 133 27.1
COL.COLO4_08663 Corchorus olitorius HOM05D014020 ORTHO05D000001 6.6e-06 55.5 173 24.9
THA.LOC109116754 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 6.6e-06 55.5 59 49.2
ECA236G4365 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.6e-06 55.1 155 26.5
Gorai.013G092800 Gossypium raimondii HOM05D000002 ORTHO05D000001 8.6e-06 55.1 149 28.9
Nitab4.5_0007044g0010 Nicotiana tabacum HOM05D000002 ORTHO05D000001 8.6e-06 55.1 60 43.3


User provided reference genes

Program Settings