Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 4.3e-62 241.1 120 100.0
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 2.0e-38 162.5 106 81.1
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 1.3e-37 159.8 127 66.9
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 6.3e-37 157.5 99 85.9
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 4.1e-36 154.8 99 82.8
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 4.5e-35 151.4 126 64.3
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 2.0e-27 125.9 98 76.5
Lalb_Chr21g0319141 Lupinus albus HOM05D004965 ORTHO05D004401 3.8e-26 121.7 98 67.3
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 6.3e-21 104.4 104 61.5
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 6.3e-21 104.4 104 61.5
Medtr6g009390 Medicago truncatula HOM05D004965 ORTHO05D004401 1.1e-20 103.6 69 72.5
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 6.5e-18 94.4 87 59.8
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 4.2e-17 91.7 95 55.8
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 1.4e-15 86.7 85 54.1
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 1.8e-15 86.3 99 54.5
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 2.3e-15 85.9 93 50.5
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 6.8e-15 84.3 97 48.5
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.5e-14 83.2 99 47.5
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 1.5e-14 83.2 100 50.0
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 2.0e-14 82.8 88 47.7
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.6e-14 82.4 97 53.6
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.6e-14 82.4 97 53.6
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 4.4e-14 81.6 97 53.6
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 4.4e-14 81.6 88 48.9
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.2e-13 79.3 97 52.6
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.7e-13 78.6 97 52.6
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 4.8e-13 78.2 95 49.5
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 4.8e-13 78.2 97 47.4
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.1e-12 77.0 97 50.5
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 1.6e-11 73.2 92 42.4
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 2.0e-11 72.8 91 48.4
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 2.7e-11 72.4 82 47.6
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 3.5e-11 72.0 110 43.6
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 4.5e-11 71.6 100 46.0
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 1.0e-10 70.5 77 53.2
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 1.0e-10 70.5 97 46.4
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 1.0e-10 70.5 96 44.8
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.0e-10 70.5 87 42.5
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 1.3e-10 70.1 92 42.4
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.3e-10 70.1 100 43.0
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.3e-10 70.1 101 42.6
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.3e-10 69.3 97 45.4
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 2.9e-10 68.9 102 41.2
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 6.6e-10 67.8 89 43.8
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 2.5e-09 65.9 96 40.6
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 3.3e-09 65.5 85 44.7
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 7.2e-09 64.3 93 38.7
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 1.2e-08 63.5 78 44.9
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.2e-08 63.5 87 43.7
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 2.1e-08 62.8 97 39.2
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 6.1e-08 61.2 106 38.7
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.0e-07 60.5 90 41.1
Peaxi162Scf00059g00123 Petunia axillaris HOM05D028751 ORTHO05D030265 1.8e-07 59.7 69 46.4
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 1.8e-07 59.7 77 44.2
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 1.8e-07 59.7 77 45.5
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 2.3e-07 59.3 78 43.6
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 2.3e-07 59.3 109 38.5
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 2.3e-07 59.3 61 50.8
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.3e-07 59.3 100 43.0
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.3e-07 59.3 100 43.0
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 4.0e-07 58.5 100 43.0
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 6.8e-07 57.8 104 37.5
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 6.8e-07 57.8 101 39.6
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 6.8e-07 57.8 94 38.3
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 6.8e-07 57.8 104 41.3
Thhalv10005220m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 8.9e-07 57.4 93 45.2
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 1.2e-06 57.0 75 42.7
Thhalv10028314m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 1.2e-06 57.0 80 43.8
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 1.2e-06 57.0 96 40.6
Nitab4.5_0002265g0020 Nicotiana tabacum HOM05D021089 ORTHO05D022961 1.2e-06 57.0 47 55.3
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 1.2e-06 57.0 94 37.2
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.5e-06 56.6 100 38.0
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 2.0e-06 56.2 91 40.7
Lsat_1_v5_gn_0_35980 Lactuca sativa HOM05D004965 ORTHO05D004401 2.0e-06 56.2 89 39.3
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 2.0e-06 56.2 100 36.0
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 2.6e-06 55.8 96 37.5
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 3.4e-06 55.5 94 43.6
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 3.4e-06 55.5 94 43.6
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 3.4e-06 55.5 94 44.7
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 3.4e-06 55.5 47 57.4
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 4.4e-06 55.1 94 43.6
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 4.4e-06 55.1 94 44.7
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 5.7e-06 54.7 85 38.8
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 5.7e-06 54.7 91 39.6
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 7.5e-06 54.3 100 39.0


User provided reference genes

Program Settings