Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 3.6e-103 378.3 188 100.0
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 1.7e-97 359.4 188 93.6
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 1.5e-80 303.1 188 80.3
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 1.6e-79 299.7 188 82.4
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 8.0e-79 297.4 188 83.0
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 8.8e-78 293.9 188 80.3
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 8.8e-78 293.9 188 80.9
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 3.3e-77 292.0 188 80.3
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 8.2e-76 287.3 188 78.7
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 2.4e-75 285.8 188 77.7
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 7.0e-75 284.3 177 78.0
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 7.0e-75 284.3 188 77.1
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.6e-74 283.1 188 73.4
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.6e-74 283.1 188 73.4
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 3.5e-74 282.0 189 72.5
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 7.7e-74 280.8 186 74.2
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 7.7e-74 280.8 186 74.2
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 5.0e-73 278.1 188 73.9
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 1.1e-72 276.9 186 73.7
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.9e-72 276.2 189 74.6
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 3.2e-72 275.4 189 74.6
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 2.1e-71 272.7 193 73.1
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 6.1e-71 271.2 189 69.8
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.0e-70 270.4 189 70.9
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.0e-70 270.4 188 71.8
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 1.4e-70 270.0 189 71.4
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 4.0e-70 268.5 189 70.9
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 4.0e-70 268.5 185 71.9
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 4.0e-70 268.5 185 71.9
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 4.0e-70 268.5 185 71.9
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 5.2e-70 268.1 188 70.7
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 5.2e-70 268.1 185 71.9
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 1.2e-69 266.9 185 71.9
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 2.0e-69 266.2 189 69.8
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 7.5e-69 264.2 174 74.1
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.7e-68 263.1 185 69.7
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 2.2e-68 262.7 189 70.4
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 2.8e-68 262.3 190 71.1
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 2.8e-68 262.3 185 70.3
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 3.7e-68 261.9 189 70.4
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 3.7e-68 261.9 194 67.5
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 3.7e-68 261.9 174 73.0
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 6.3e-68 261.2 184 70.1
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 2.4e-67 259.2 185 68.1
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 5.4e-67 258.1 185 67.6
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 5.4e-67 258.1 178 70.8
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 9.1e-67 257.3 189 66.7
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 9.1e-67 257.3 189 67.7
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 1.2e-66 256.9 181 69.1
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.2e-66 256.9 189 67.7
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.2e-66 256.9 174 72.4
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 1.2e-66 256.9 187 67.9
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.5e-66 255.4 174 73.6
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 4.5e-66 255.0 177 69.5
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 7.7e-66 254.2 189 67.2
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 1.0e-65 253.8 183 69.4
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 1.0e-65 253.8 175 72.0
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 1.3e-65 253.4 185 68.1
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 1.7e-65 253.1 187 69.0
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 2.3e-65 252.7 186 67.7
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 2.9e-65 252.3 174 70.1
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.9e-65 252.3 186 70.4
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 2.9e-65 252.3 200 65.5
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 3.8e-65 251.9 185 68.6
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 5.0e-65 251.5 186 70.4
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 6.5e-65 251.1 185 67.0
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 6.5e-65 251.1 185 67.0
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 8.6e-65 250.8 187 67.9
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 8.6e-65 250.8 187 67.9
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.5e-64 250.0 196 65.3
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 4.2e-64 248.4 187 66.8
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 4.2e-64 248.4 189 65.6
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 5.5e-64 248.1 189 64.6
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 5.5e-64 248.1 187 66.8
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 5.5e-64 248.1 185 65.4
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 7.2e-64 247.7 187 66.8
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 2.8e-63 245.7 177 67.2
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 2.8e-63 245.7 189 64.6
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 4.7e-63 245.0 186 65.1
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 1.8e-62 243.0 174 67.8
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 4.0e-62 241.9 188 65.4
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.0e-62 241.9 190 64.7
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 5.2e-62 241.5 188 64.4
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 5.2e-62 241.5 152 75.7
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 6.8e-62 241.1 187 64.7
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 8.8e-62 240.7 188 63.3
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 1.2e-61 240.4 188 62.8
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 7.5e-61 237.7 174 67.2
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 9.8e-61 237.3 176 65.9
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 1.3e-60 236.9 191 63.4
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 2.8e-60 235.7 169 68.0
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 1.2e-58 230.3 189 63.0
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 2.7e-58 229.2 159 70.4
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 2.3e-57 226.1 185 61.1
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 2.9e-57 225.7 213 56.8
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 1.5e-56 223.4 185 58.9
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 5.6e-56 221.5 278 46.4
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 4.9e-52 208.4 181 58.6
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 8.3e-52 207.6 161 66.5
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 3.5e-50 202.2 157 63.7
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 5.9e-50 201.4 185 57.3
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 7.8e-50 201.1 186 54.8
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.3e-49 199.5 173 54.3
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 3.0e-49 199.1 185 55.1
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 5.0e-49 198.4 185 54.6
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 1.5e-48 196.8 185 54.1
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 1.2e-47 193.7 185 54.6
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 1.2e-47 193.7 185 55.1
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 3.4e-45 185.7 185 53.5
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 4.4e-45 185.3 207 51.2
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 1.3e-44 183.7 185 53.5
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 2.9e-44 182.6 170 61.2
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 1.4e-43 180.3 174 56.9
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 1.9e-43 179.9 185 52.4
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 5.4e-43 178.3 185 51.9
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 5.4e-43 178.3 185 51.9
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 5.4e-43 178.3 185 51.9
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 6.0e-42 174.9 186 51.1
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 7.8e-42 174.5 186 50.5
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 7.8e-42 174.5 186 50.5
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 6.2e-39 164.9 141 60.3
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 4.9e-36 155.2 106 72.6
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 1.2e-34 150.6 186 47.8
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.0e-33 146.0 155 53.5
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.4e-29 132.1 115 60.0
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 1.9e-27 126.7 74 82.4
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 2.4e-22 109.8 85 63.5
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 6.9e-22 108.2 78 60.3
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 2.6e-21 106.3 155 41.3
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 1.1e-19 100.9 84 63.1
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 5.4e-19 98.6 61 80.3
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.2e-18 97.4 82 64.6
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 6.0e-18 95.1 159 35.2
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 7.8e-18 94.7 137 39.4
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 7.8e-18 94.7 82 53.7
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 1.6e-15 87.0 119 39.5
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.8e-14 83.6 71 54.9
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.8e-14 83.6 71 54.9
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.4e-14 83.2 69 56.5
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 5.3e-14 82.0 97 47.4
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.9e-12 76.3 90 54.4
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.2e-10 70.9 66 57.6
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 5.3e-06 55.5 45 55.6


User provided reference genes

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