Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 2.6e-108 395.6 229 100.0
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 6.7e-96 354.4 229 91.3
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 1.9e-95 352.8 229 90.4
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 2.5e-95 352.4 229 90.4
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 2.5e-95 352.4 229 90.4
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 2.5e-95 352.4 229 90.4
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 4.3e-95 351.7 229 90.0
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 4.3e-95 351.7 229 90.8
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 7.4e-95 350.9 229 90.0
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 1.6e-94 349.7 229 90.8
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 3.7e-94 348.6 229 90.0
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 4.8e-94 348.2 228 89.5
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 4.8e-94 348.2 229 90.0
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 6.3e-94 347.8 229 89.5
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 6.3e-94 347.8 229 89.5
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 6.3e-94 347.8 229 88.6
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 6.3e-94 347.8 229 89.5
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 8.2e-94 347.4 229 88.2
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 1.4e-93 346.7 229 89.5
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 1.8e-93 346.3 229 89.5
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 2.4e-93 345.9 229 90.0
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 4.1e-93 345.1 229 89.1
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 5.3e-93 344.7 228 89.9
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 6.9e-93 344.4 229 89.1
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 1.2e-92 343.6 232 88.8
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 1.2e-92 343.6 229 90.0
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 1.2e-92 343.6 230 88.3
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 2.0e-92 342.8 226 90.3
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 2.6e-92 342.4 230 88.3
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.5e-92 341.7 229 88.2
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 4.5e-92 341.7 229 87.3
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 4.5e-92 341.7 229 89.1
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 4.5e-92 341.7 229 88.2
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 5.9e-92 341.3 229 88.2
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 5.9e-92 341.3 229 88.2
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 7.7e-92 340.9 230 87.4
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 7.7e-92 340.9 230 87.8
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 7.7e-92 340.9 230 87.8
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 7.7e-92 340.9 230 87.8
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 1.0e-91 340.5 229 86.9
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.0e-91 340.5 230 88.7
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.0e-91 340.5 230 88.7
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 1.0e-91 340.5 228 89.0
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.3e-91 340.1 229 87.3
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 1.3e-91 340.1 230 87.0
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.3e-91 340.1 230 87.0
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 1.3e-91 340.1 229 87.3
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.7e-91 339.7 229 87.8
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 1.7e-91 339.7 229 86.9
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.2e-91 339.3 229 87.8
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 2.2e-91 339.3 229 87.8
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 2.2e-91 339.3 229 87.8
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.9e-91 339.0 229 87.8
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.9e-91 339.0 230 88.3
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 3.8e-91 338.6 233 86.3
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 5.0e-91 338.2 229 87.3
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 5.0e-91 338.2 229 89.1
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 6.5e-91 337.8 236 86.4
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 8.5e-91 337.4 230 86.5
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 1.1e-90 337.0 229 87.8
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 1.1e-90 337.0 229 88.2
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 1.4e-90 336.7 229 87.3
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 1.4e-90 336.7 231 87.9
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 1.4e-90 336.7 229 88.6
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 1.9e-90 336.3 231 87.9
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 3.2e-90 335.5 229 87.3
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 3.2e-90 335.5 229 87.8
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 9.4e-90 334.0 229 85.6
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 9.4e-90 334.0 228 87.3
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 9.4e-90 334.0 231 87.4
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 9.4e-90 334.0 229 87.3
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.2e-89 333.6 231 87.4
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 1.2e-89 333.6 229 87.3
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 3.6e-89 332.0 227 85.5
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 4.6e-89 331.6 229 86.5
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 4.6e-89 331.6 229 86.5
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 6.1e-89 331.3 229 86.5
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.4e-88 330.1 229 85.6
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 1.8e-88 329.7 229 85.6
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.3e-88 329.3 229 85.6
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.3e-88 329.3 229 85.6
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 3.0e-88 328.9 228 86.8
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 6.7e-88 327.8 229 86.0
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 8.8e-88 327.4 269 76.2
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.1e-87 327.0 229 86.0
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 3.3e-87 325.5 229 86.0
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 4.3e-87 325.1 225 86.7
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 5.7e-87 324.7 229 82.1
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 2.8e-86 322.4 228 85.5
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 6.3e-86 321.2 229 83.8
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 2.4e-85 319.3 229 83.4
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 2.4e-85 319.3 229 83.4
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 3.1e-85 318.9 198 93.9
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 4.1e-85 318.5 195 93.8
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 4.1e-85 318.5 229 83.4
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 6.9e-85 317.8 229 82.5
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 6.9e-85 317.8 229 82.5
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 6.9e-85 317.8 229 83.4
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 9.1e-85 317.4 229 82.1
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 9.1e-85 317.4 229 82.1
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.2e-84 317.0 211 88.6
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 2.6e-84 315.8 229 82.1
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 2.6e-84 315.8 229 83.4
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.6e-84 315.8 229 82.1
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 3.4e-84 315.5 229 82.5
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 5.9e-84 314.7 229 82.1
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 7.7e-84 314.3 229 82.1
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 7.7e-84 314.3 229 82.1
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 7.7e-84 314.3 229 82.1
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.0e-83 313.9 229 82.5
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-83 313.5 229 82.1
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-83 313.5 229 81.7
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 1.3e-83 313.5 229 81.7
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 1.7e-83 313.2 229 81.7
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 6.5e-83 311.2 230 80.9
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 8.5e-83 310.8 229 81.7
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 8.5e-83 310.8 229 81.7
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 2.5e-82 309.3 229 82.1
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 3.2e-82 308.9 230 82.2
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.4e-80 303.5 229 80.3
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.8e-80 303.1 285 62.5
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 1.1e-79 300.4 235 79.6
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.5e-79 300.1 208 85.1
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 2.6e-79 299.3 214 84.6
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 5.7e-79 298.1 186 94.6
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 1.7e-78 296.6 229 79.0
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 2.2e-78 296.2 211 83.9
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 4.8e-78 295.0 210 84.3
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 6.3e-78 294.7 185 91.9
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.8e-77 293.1 184 93.5
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 2.0e-76 289.7 197 88.3
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 3.2e-74 282.3 197 86.3
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 4.2e-74 282.0 168 97.6
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 5.5e-74 281.6 180 90.0
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 5.2e-72 275.0 207 82.1
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 3.3e-71 272.3 197 85.3
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 2.4e-69 266.2 187 84.0
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 2.4e-69 266.2 186 84.9
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 2.0e-68 263.1 229 71.2
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 4.5e-68 261.9 226 65.5
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 6.5e-67 258.1 166 89.8
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 8.5e-67 257.7 169 89.3
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 1.2e-65 253.8 164 90.2
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.4e-63 245.4 180 81.1
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.4e-61 240.4 148 96.6
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 9.1e-61 237.7 148 91.9
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 6.5e-59 231.5 212 69.8
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.0e-56 224.2 178 78.1
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.4e-56 223.8 178 70.2
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 1.4e-56 223.8 214 65.0
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.8e-56 223.4 137 97.1
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 2.3e-56 223.0 138 82.6
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.2e-55 220.7 244 56.6
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 7.5e-55 218.0 161 77.0
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 4.8e-54 215.3 166 76.5
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.4e-53 213.8 159 69.2
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 8.6e-51 204.5 137 89.1
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.1e-50 204.1 132 95.5
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 8.0e-49 198.0 162 74.7
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 8.0e-49 198.0 120 80.8
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 1.1e-34 151.0 123 65.9
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 1.4e-32 144.1 127 60.6
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 2.4e-29 133.3 229 42.8
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.8e-24 117.1 209 40.7
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 3.3e-18 96.3 109 49.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 4.3e-18 95.9 47 97.9
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 1.1e-16 91.3 78 64.1
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 4.0e-08 62.8 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.5e-07 60.8 60 53.3


User provided reference genes

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