Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.2e-132 476.5 240 100.0
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.4e-96 356.7 248 75.8
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 8.6e-86 320.9 241 67.2
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 8.6e-86 320.9 241 67.2
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 2.8e-84 315.8 244 70.5
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 8.0e-84 314.3 241 67.2
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.2e-82 310.5 244 69.3
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 1.5e-82 310.1 244 66.4
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 2.0e-82 309.7 240 66.7
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 2.4e-80 302.8 243 66.3
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 2.0e-79 299.7 245 65.7
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 7.8e-79 297.7 240 65.4
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.0e-78 297.4 245 65.3
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 1.7e-78 296.6 245 65.7
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 8.6e-78 294.3 244 64.3
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 2.5e-77 292.7 243 62.6
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 2.5e-77 292.7 238 64.3
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.6e-76 290.0 251 63.3
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.0e-75 285.4 253 62.8
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 5.2e-75 285.0 251 61.8
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 5.2e-75 285.0 241 61.8
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 2.0e-74 283.1 241 59.8
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 2.6e-74 282.7 239 61.5
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 3.4e-74 282.3 238 61.8
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.9e-72 276.6 240 57.9
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.4e-72 276.2 238 60.9
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 3.5e-71 272.3 237 61.2
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 6.0e-71 271.6 240 59.2
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 6.0e-71 271.6 236 60.2
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.0e-70 270.8 181 72.4
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.3e-70 269.6 238 58.4
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 5.1e-70 268.5 183 69.4
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.1e-69 267.3 238 58.4
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.1e-69 267.3 236 58.5
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.1e-69 267.3 239 58.2
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 1.5e-69 266.9 182 71.4
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 4.3e-69 265.4 241 58.1
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 9.5e-69 264.2 238 58.0
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.2e-68 263.8 238 58.0
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.8e-68 262.7 238 58.0
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.8e-68 262.7 178 70.2
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 6.2e-68 261.5 235 60.4
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 1.1e-67 260.8 234 56.8
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.4e-67 260.4 192 65.6
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 1.4e-67 260.4 245 58.0
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 3.1e-67 259.2 179 68.2
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 3.1e-67 259.2 246 56.1
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 4.0e-67 258.8 182 69.2
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.5e-66 256.9 243 54.7
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 4.4e-66 255.4 181 68.5
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 2.2e-65 253.1 187 64.7
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 2.2e-65 253.1 189 65.6
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.2e-65 253.1 181 68.5
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 6.4e-65 251.5 241 55.6
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 8.4e-65 251.1 192 65.1
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 8.4e-65 251.1 192 65.1
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.4e-64 250.4 236 55.5
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 2.4e-64 249.6 228 57.9
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 3.2e-64 249.2 195 65.1
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 3.2e-64 249.2 238 54.6
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 5.4e-64 248.4 195 64.6
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 5.4e-64 248.4 195 64.6
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 9.2e-64 247.7 235 55.3
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.2e-63 247.3 242 57.0
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 2.1e-63 246.5 190 64.7
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.7e-63 246.1 188 64.4
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 3.5e-63 245.7 188 65.4
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 3.5e-63 245.7 177 67.8
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.6e-63 245.4 240 53.8
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 6.0e-63 245.0 188 66.5
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 7.8e-63 244.6 246 54.1
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.0e-62 244.2 236 56.8
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.0e-62 244.2 185 65.4
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.0e-62 244.2 188 64.4
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 1.7e-62 243.4 191 65.4
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.7e-62 243.4 193 63.2
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.3e-62 243.0 270 51.5
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 2.3e-62 243.0 195 62.6
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 5.1e-62 241.9 189 61.9
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 5.1e-62 241.9 191 64.4
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.1e-62 241.9 187 63.6
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.1e-62 241.9 192 63.5
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 5.1e-62 241.9 199 65.3
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 6.6e-62 241.5 243 52.7
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 1.9e-61 240.0 179 64.8
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 2.5e-61 239.6 240 55.4
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 5.6e-61 238.4 239 52.3
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 7.3e-61 238.0 180 65.0
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.6e-60 236.9 200 59.0
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 2.1e-60 236.5 172 68.6
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 2.8e-60 236.1 182 63.7
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 2.8e-60 236.1 187 63.6
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 3.1e-59 232.6 196 60.2
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.2e-59 231.9 182 63.7
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 6.9e-59 231.5 183 63.9
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 8.9e-59 231.1 243 51.9
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 2.0e-58 229.9 270 50.7
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 5.8e-58 228.4 239 54.8
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.3e-57 227.3 175 64.6
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 2.2e-57 226.5 184 59.2
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 1.9e-56 223.4 153 75.8
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 5.4e-56 221.9 241 51.5
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 7.1e-56 221.5 146 70.5
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.7e-55 219.5 146 70.5
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 7.8e-55 218.0 167 68.3
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 8.7e-54 214.5 135 74.1
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.1e-53 214.2 156 64.1
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.1e-53 214.2 194 53.6
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.5e-53 213.8 156 67.3
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.5e-53 213.0 147 69.4
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 4.3e-53 212.2 232 50.0
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 5.6e-53 211.8 258 47.3
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.8e-52 209.5 140 70.7
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 3.6e-52 209.1 231 48.9
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 4.8e-52 208.8 146 67.8
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 4.8e-52 208.8 139 70.5
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 8.1e-52 208.0 147 66.7
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 3.1e-51 206.1 139 69.8
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 5.3e-51 205.3 185 57.3
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.5e-50 203.8 163 60.7
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 5.8e-50 201.8 198 51.0
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 9.9e-50 201.1 174 55.7
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.3e-49 200.7 196 51.5
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.9e-49 199.5 120 80.0
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 8.4e-49 198.0 159 61.6
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 1.5e-45 187.2 160 60.6
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 2.8e-44 183.0 168 57.7
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 8.1e-44 181.4 143 61.5
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 8.1e-44 181.4 193 51.3
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 5.3e-43 178.7 238 44.5
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.0e-42 176.8 145 55.2
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.6e-42 176.4 176 58.0
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.6e-42 176.4 165 54.5
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 5.8e-42 175.3 139 57.6
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 7.9e-39 164.9 190 48.9
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 3.0e-38 162.9 149 57.7
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 3.0e-38 162.9 179 49.7
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 2.5e-37 159.8 170 50.6
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 3.2e-32 142.9 144 55.6
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.1e-32 141.7 202 40.1
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 7.9e-31 138.3 173 45.1
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 5.7e-29 132.1 141 50.4
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 2.9e-25 119.8 151 47.0
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 2.9e-25 119.8 128 48.4
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 8.2e-20 101.7 152 38.8
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 5.3e-19 99.0 79 63.3
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 2.2e-17 93.6 132 36.4
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 3.2e-16 89.7 148 35.8
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.4e-13 79.3 150 29.3
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 8.2e-12 75.1 83 51.8
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.1e-11 72.8 146 30.8
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 7.7e-10 68.6 124 31.5
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.9e-09 66.6 165 30.3
QL02p051406 Quercus lobata HOM05D004693 ORTHO05D005545 7.2e-08 62.0 88 40.9
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 1.2e-07 61.2 114 30.7
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.0e-06 58.2 61 47.5
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.9e-06 56.2 80 43.8


User provided reference genes

Program Settings