Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 1.4e-185 652.9 342 100.0
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 9.1e-57 224.9 353 48.7
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 1.6e-53 214.2 344 46.2
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 1.8e-49 200.7 344 43.9
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 1.2e-48 198.0 353 44.8
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 2.4e-41 173.7 350 41.7
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 6.0e-40 169.1 350 40.3
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 1.3e-39 167.9 347 39.5
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 5.0e-39 166.0 357 40.3
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 7.8e-32 142.1 344 38.4
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 1.0e-31 141.7 327 40.4
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 3.0e-31 140.2 335 38.8
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 5.1e-31 139.4 339 38.1
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 8.6e-31 138.7 351 34.5
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 3.1e-28 130.2 354 36.2
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 6.8e-28 129.0 380 32.1
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 5.8e-27 125.9 359 33.7
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 7.5e-27 125.6 353 35.4
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 8.3e-26 122.1 320 35.9
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 1.1e-25 121.7 350 32.3
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 1.4e-25 121.3 350 33.1
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 1.9e-25 120.9 372 31.2
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 3.2e-25 120.2 350 32.9
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 4.1e-25 119.8 328 33.2
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.2e-24 118.2 353 32.6
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 1.6e-24 117.9 330 33.3
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 6.0e-24 115.9 340 35.3
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.3e-23 114.0 342 33.6
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.0e-23 113.6 354 32.2
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 2.5e-22 110.5 346 32.7
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 2.5e-22 110.5 389 31.6
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 7.3e-22 109.0 316 33.2
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 2.1e-21 107.5 352 31.0
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 2.1e-21 107.5 371 30.7
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.1e-21 107.5 354 31.1
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.8e-21 107.1 320 33.4
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 8.1e-21 105.5 333 32.7
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 6.8e-20 102.4 384 30.7
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 8.9e-20 102.1 354 32.8
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 8.9e-20 102.1 385 31.7
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 8.9e-20 102.1 386 32.4
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.5e-19 101.3 354 30.8
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 5.8e-19 99.4 359 31.8
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 9.9e-19 98.6 336 31.2
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.3e-18 98.2 359 31.2
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.3e-18 98.2 354 30.8
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.7e-18 97.8 329 32.5
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 3.8e-18 96.7 364 32.4
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 8.4e-18 95.5 342 31.6
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.1e-17 95.1 337 31.8
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.4e-17 94.7 356 33.1
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 1.9e-17 94.4 321 30.8
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 2.4e-17 94.0 200 34.0
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 4.2e-17 93.2 339 32.4
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 4.2e-17 93.2 387 31.0
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.1e-17 92.4 342 31.3
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 9.2e-17 92.0 345 32.2
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.6e-16 91.3 359 29.2
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 1.6e-16 91.3 381 31.2
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 2.1e-16 90.9 356 32.3
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 1.0e-15 88.6 334 32.0
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 6.6e-15 85.9 349 33.0
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 1.9e-14 84.3 319 30.7
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 3.3e-14 83.6 375 31.7
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 9.6e-14 82.0 275 30.5
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 9.6e-14 82.0 368 32.1
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 1.6e-13 81.3 329 31.9
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 1.6e-13 81.3 329 31.9
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 1.1e-12 78.6 195 35.4
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 4.0e-12 76.6 356 29.5
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 5.3e-12 76.3 376 27.7
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 6.9e-12 75.9 358 29.1
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 2.0e-11 74.3 334 31.7
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.6e-11 73.9 356 28.9
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 3.4e-11 73.6 356 29.5
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 2.2e-10 70.9 347 29.1
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 4.9e-10 69.7 309 28.8
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 1.1e-09 68.6 333 27.6
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.1e-09 68.6 364 28.0
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 2.4e-09 67.4 318 29.6
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 2.4e-09 67.4 200 30.0
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 3.2e-09 67.0 356 25.6
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 5.4e-09 66.2 374 25.9
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 7.1e-09 65.9 289 28.0
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 1.2e-08 65.1 118 44.9
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 1.2e-08 65.1 367 30.0
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 1.6e-08 64.7 150 32.7
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 6.0e-08 62.8 309 28.2
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 7.8e-08 62.4 346 29.8
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.3e-07 60.8 309 28.5
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 3.0e-07 60.5 331 28.1
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 1.1e-06 58.5 330 27.9
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.5e-06 58.2 100 32.0
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 1.5e-06 58.2 327 25.7
HanXRQChr12g0377191 Helianthus annuus HOM05D005407 ORTHO05D006544 1.9e-06 57.8 96 42.7
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.3e-06 57.0 358 26.8
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 3.3e-06 57.0 317 25.6
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 4.3e-06 56.6 77 45.5
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 4.3e-06 56.6 127 33.9
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.3e-06 55.8 309 28.8


User provided reference genes

Program Settings