Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0008675 Lotus japonicus HOM05D003192 ORTHO05D003596 7.8e-231 803.5 430 100.0
Glyma.01G023100 Glycine max HOM05D003192 ORTHO05D003596 2.1e-98 363.6 512 48.8
Medtr5g032080 Medicago truncatula HOM05D003192 ORTHO05D003596 3.4e-85 319.7 468 47.2
Phvul.002G147100 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 4.5e-85 319.3 480 45.6
Glyma.18G147000 Glycine max HOM05D003192 ORTHO05D003596 2.9e-84 316.6 455 47.0
VMungo1215G1834 Vigna mungo HOM05D003192 ORTHO05D003596 3.9e-81 306.2 497 44.7
Glyma.08G279600 Glycine max HOM05D003192 ORTHO05D003596 1.8e-78 297.4 512 42.8
Ca_22705_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 1.2e-77 294.7 453 45.7
TPR.G39012 Trifolium pratense HOM05D003192 ORTHO05D003596 6.5e-76 288.9 435 47.6
QL06p035789 Quercus lobata HOM05D003192 ORTHO05D003596 4.4e-64 249.6 439 42.1
Haze_03871 Corylus avellana HOM05D003192 ORTHO05D003596 4.1e-62 243.0 452 40.5
Cfa006881 Carpinus fangiana HOM05D003192 ORTHO05D003596 5.0e-60 236.1 453 40.0
CiPaw.08G140100 Carya illinoinensis HOM05D003192 ORTHO05D003596 8.2e-55 218.8 430 40.7
Lj4g0006883 Lotus japonicus HOM05D003192 ORTHO05D003596 5.9e-53 212.6 466 37.3
Thecc.01G090500 Theobroma cacao HOM05D003192 ORTHO05D003596 4.2e-51 206.5 477 34.2
CANSAT01G3047 Cannabis sativa HOM05D003192 ORTHO05D003596 1.2e-50 204.9 491 35.0
Duzib147G1583 Durio zibethinus HOM05D003192 ORTHO05D003596 1.6e-50 204.5 495 35.2
Phvul.003G289000 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 8.0e-50 202.2 457 36.8
VMungo0251G1378 Vigna mungo HOM05D003192 ORTHO05D003596 1.0e-49 201.8 413 38.3
ClCG01G018360 Citrullus lanatus HOM05D003192 ORTHO05D003596 3.0e-49 200.3 494 35.0
Duzib187G1957 Durio zibethinus HOM05D003192 ORTHO05D003596 4.0e-49 199.9 496 34.7
Gohir.D11G216300 Gossypium hirsutum HOM05D003192 ORTHO05D003596 4.0e-49 199.9 498 34.3
GSVIVG01005928001 Vitis vinifera HOM05D003192 ORTHO05D003596 5.2e-49 199.5 403 37.2
Atru.chr3.1246 Acer truncatum HOM05D003192 ORTHO05D003596 1.2e-48 198.4 402 38.1
Gorai.007G232500 Gossypium raimondii HOM05D003192 ORTHO05D003596 7.5e-48 195.7 501 34.7
CsaV3_6G044990 Cucumis sativus L. HOM05D003192 ORTHO05D003596 6.3e-47 192.6 469 34.5
Sed0023722 Sechium edule HOM05D003192 ORTHO05D003596 5.4e-46 189.5 514 32.1
MELO3C007714.2 Cucumis melo HOM05D003192 ORTHO05D003596 2.7e-45 187.2 422 36.0
Gohir.A11G207000 Gossypium hirsutum HOM05D003192 ORTHO05D003596 3.5e-45 186.8 407 39.3
Ciclev10024755m.g Citrus clementina HOM05D003192 ORTHO05D003596 7.7e-45 185.7 476 35.9
Sabra16G0282500 Salix brachista HOM05D003192 ORTHO05D003596 2.2e-44 184.1 446 34.3
Potri.011G131500 Populus trichocarpa HOM05D003192 ORTHO05D003596 8.5e-44 182.2 494 32.2
Sed0023170 Sechium edule HOM05D003192 ORTHO05D003596 6.1e-42 176.0 465 32.9
TWI53G1641 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 8.0e-42 175.6 359 39.3
PGR031G3296 Punica granatum HOM05D003192 ORTHO05D003596 1.4e-41 174.9 459 33.8
FAN26G1555 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.5e-40 171.4 433 33.7
Lalb_Chr05g0216371 Lupinus albus HOM05D003192 ORTHO05D003596 1.5e-40 171.4 321 42.1
Sabra11G0118600 Salix brachista HOM05D003192 ORTHO05D003596 4.4e-40 169.9 323 38.4
Eucgr.I00559 Eucalyptus grandis HOM05D003192 ORTHO05D003596 1.1e-38 165.2 408 32.1
FAN28G2653 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.1e-38 165.2 401 31.7
Lalb_Chr05g0228511 Lupinus albus HOM05D003192 ORTHO05D003596 2.4e-38 164.1 422 33.9
FvH4_1g19631 Fragaria vesca HOM05D003192 ORTHO05D003596 9.1e-38 162.2 433 32.1
FAN19G3065 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.2e-37 161.8 476 30.3
TWI77G0115 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 1.2e-37 161.8 386 35.0
Prupe.6G201700 Prunus persica HOM05D003192 ORTHO05D003596 1.6e-37 161.4 381 35.7
Potri.001G415800 Populus trichocarpa HOM05D003192 ORTHO05D003596 7.7e-37 159.1 449 32.7
Manes.13G100000 Manihot esculenta HOM05D003192 ORTHO05D003596 1.1e-35 155.2 323 39.3
RcHm_v2.0_Chr2g0111201 Rosa chinensis HOM05D003192 ORTHO05D003596 6.8e-33 146.0 433 30.7
AT4G38062 Arabidopsis thaliana HOM05D003192 ORTHO05D003596 4.4e-32 143.3 477 29.6
vmacro13008 Vaccinium macrocarpon HOM05D003192 ORTHO05D003596 4.4e-32 143.3 384 32.6
arahy.Tifrunner.gnm1.ann1.ND4N8X Arachis hypogaea HOM05D003192 ORTHO05D003596 9.8e-32 142.1 399 32.8
arahy.Tifrunner.gnm1.ann1.QT15T4 Arachis hypogaea HOM05D003192 ORTHO05D003596 9.8e-32 142.1 399 32.8
FAN23G2850 Fragaria x ananassa HOM05D003192 ORTHO05D003596 9.8e-32 142.1 433 30.5
Sp7g35710 Schrenkiella parvula HOM05D003192 ORTHO05D003596 1.7e-31 141.4 463 29.2
TAR625G0274 Trochodendron aralioides HOM05D003192 ORTHO05D003596 2.4e-30 137.5 363 34.7
AL7G12570 Arabidopsis lyrata HOM05D003192 ORTHO05D003596 3.2e-30 137.1 476 28.6
CSS0015283 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 7.0e-30 136.0 379 33.2
Gohir.A02G144501 Gossypium hirsutum HOM05D003192 ORTHO05D003596 7.0e-30 136.0 412 31.3
Dinv36931 Davidia involucrata HOM05D003192 ORTHO05D003596 1.6e-29 134.8 501 28.7
TAR381G0021 Trochodendron aralioides HOM05D003192 ORTHO05D003596 1.0e-28 132.1 418 32.5
Carub.0007s0215 Capsella rubella HOM05D003192 ORTHO05D003596 2.9e-28 130.6 477 28.7
Dinv13601 Davidia involucrata HOM05D003192 ORTHO05D003596 4.3e-27 126.7 353 32.0
unitig_32.g10709 Utricularia gibba HOM05D003192 ORTHO05D003596 2.1e-26 124.4 436 28.9
Peaxi162Scf00191g00034 Petunia axillaris HOM05D003192 ORTHO05D003596 2.8e-26 124.0 379 29.8
Nn5g29883 Nelumbo nucifera HOM05D003192 ORTHO05D003596 3.6e-26 123.6 431 29.2
CARHR246480 Cardamine hirsuta HOM05D003192 ORTHO05D003596 8.0e-26 122.5 387 31.0
Psat4g119640 Pisum sativum HOM05D003192 ORTHO05D003596 8.0e-26 122.5 186 41.4
CAN.G1344.16 Capsicum annuum HOM05D003192 ORTHO05D003596 1.4e-25 121.7 451 26.8
Rhsim10G0172900 Rhododendron simsii HOM05D003192 ORTHO05D003596 1.4e-25 121.7 252 38.9
THA.LOC104807671 Tarenaya hassleriana HOM05D003192 ORTHO05D003596 2.3e-25 120.9 465 29.7
BraA08t34266Z Brassica rapa HOM05D003192 ORTHO05D003596 4.0e-25 120.2 421 29.9
HanXRQChr11g0346961 Helianthus annuus HOM05D003192 ORTHO05D003596 4.0e-25 120.2 323 31.3
MD01G1039400 Malus domestica HOM05D003192 ORTHO05D003596 4.0e-25 120.2 263 36.9
A08p23070 Brassica napus HOM05D003192 ORTHO05D003596 3.4e-24 117.1 421 29.7
C03p78760 Brassica napus HOM05D003192 ORTHO05D003596 6.4e-23 112.8 458 27.7
Gohir.D03G036033 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.1e-22 112.1 363 31.4
Glyma.09G199166 Glycine max HOM05D003192 ORTHO05D003596 1.4e-22 111.7 200 40.5
BcaC01g00350 Brassica carinata HOM05D003192 ORTHO05D003596 2.4e-22 110.9 472 27.5
BcaB03g12309 Brassica carinata HOM05D003192 ORTHO05D003596 4.1e-22 110.2 457 27.1
Gorai.003G037800 Gossypium raimondii HOM05D003192 ORTHO05D003596 4.1e-22 110.2 367 30.8
Nitab4.5_0004153g0070 Nicotiana tabacum HOM05D003192 ORTHO05D003596 7.0e-22 109.4 381 31.5
BolC3t20120H Brassica oleracea HOM05D003192 ORTHO05D003596 1.6e-21 108.2 441 28.1
Sopen11g005420 Solanum pennellii HOM05D003192 ORTHO05D003596 1.6e-21 108.2 299 29.8
ECA238G4297 Erigeron canadensis HOM05D003192 ORTHO05D003596 1.1e-19 102.1 372 30.4
TPR.G14606 Trifolium pratense HOM05D003192 ORTHO05D003596 1.5e-19 101.7 276 33.3
Cc07_g14090 Coffea canephora HOM05D003192 ORTHO05D003596 2.5e-19 100.9 507 26.0
Migut.K00798 Erythranthe guttata HOM05D003192 ORTHO05D003596 2.5e-19 100.9 412 28.2
MSTRG.15688 Avicennia marina HOM05D003192 ORTHO05D003596 3.3e-19 100.5 467 25.7
Glyma.09G199232 Glycine max HOM05D003192 ORTHO05D003596 3.3e-19 100.5 141 48.2
Medtr8g471150 Medicago truncatula HOM05D003192 ORTHO05D003596 9.5e-19 99.0 261 34.1
RcHm_v2.0_Chr6g0271001 Rosa chinensis HOM05D003192 ORTHO05D003596 2.1e-18 97.8 466 25.8
Dinv24148 Davidia involucrata HOM05D003192 ORTHO05D003596 3.6e-18 97.1 185 37.8
TPR.G29979 Trifolium pratense HOM05D003192 ORTHO05D003596 8.1e-18 95.9 69 75.4
Actinidia25308 Actinidia chinensis HOM05D003192 ORTHO05D003596 1.1e-17 95.5 407 29.2
Dinv16002 Davidia involucrata HOM05D003192 ORTHO05D003596 1.8e-17 94.7 417 28.5
Cfa005735 Carpinus fangiana HOM05D003192 ORTHO05D003596 2.3e-17 94.4 493 26.4
SGA_v2.0_scaffold115G32126 Striga asiatica HOM05D003192 ORTHO05D003596 5.2e-17 93.2 322 28.9
Lj2P534T19 Lonicera japonica HOM05D003192 ORTHO05D003596 6.8e-17 92.8 354 27.7
CiPaw.05G029500 Carya illinoinensis HOM05D003192 ORTHO05D003596 1.2e-16 92.0 395 26.8
Gohir.A11G050500 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.2e-16 92.0 380 29.5
PGSC0003DMG400016132 Solanum tuberosum HOM05D003192 ORTHO05D003596 2.0e-16 91.3 201 35.3
Aqoxy5G01385 Aquilegia oxysepala HOM05D003192 ORTHO05D003596 2.6e-16 90.9 388 26.0
Aa31LG6G15020 Aethionema arabicum HOM05D003192 ORTHO05D003596 4.4e-16 90.1 404 27.7
FAN23G2642 Fragaria x ananassa HOM05D003192 ORTHO05D003596 4.4e-16 90.1 119 42.0
MD10G1054400 Malus domestica HOM05D003192 ORTHO05D003596 4.4e-16 90.1 499 24.8
Ca_22609_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 5.8e-16 89.7 421 27.3
Gohir.D11G053800 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.7e-15 88.2 421 27.1
Nitab4.5_0008998g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 2.2e-15 87.8 359 30.6
QL11p025213 Quercus lobata HOM05D003192 ORTHO05D003596 3.7e-15 87.0 394 26.4
Solyc10g047540.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 3.7e-15 87.0 284 31.0
Gorai.007G058900 Gossypium raimondii HOM05D003192 ORTHO05D003596 4.9e-15 86.7 423 26.5
QL11p025224 Quercus lobata HOM05D003192 ORTHO05D003596 4.9e-15 86.7 413 27.8
Sopen10g017840 Solanum pennellii HOM05D003192 ORTHO05D003596 4.9e-15 86.7 284 31.0
Lsat_1_v5_gn_2_70360 Lactuca sativa HOM05D003192 ORTHO05D003596 6.4e-15 86.3 251 31.5
Solyc11g010620.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 1.1e-14 85.5 399 27.6
MD05G1047500 Malus domestica HOM05D003192 ORTHO05D003596 2.4e-14 84.3 512 23.6
Thhalv10027141m.g Eutrema salsugineum HOM05D003192 ORTHO05D003596 5.4e-14 83.2 374 27.3
Nitab4.5_0007624g0010 Nicotiana tabacum HOM05D003192 ORTHO05D003596 9.2e-14 82.4 383 26.1
FAN24G0742 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.2e-13 82.0 309 27.5
Nitab4.5_0002017g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 2.1e-13 81.3 363 28.9
PSO170G5608 Papaver somniferum HOM05D003192 ORTHO05D003596 2.7e-13 80.9 288 28.5
Prupe.8G069900 Prunus persica HOM05D003192 ORTHO05D003596 4.6e-13 80.1 187 32.1
PSO210G4022 Papaver somniferum HOM05D003192 ORTHO05D003596 6.0e-13 79.7 444 24.5
FvH4_2g11711 Fragaria vesca HOM05D003192 ORTHO05D003596 1.0e-12 79.0 309 26.9
Actinidia06514 Actinidia chinensis HOM05D003192 ORTHO05D003596 3.0e-12 77.4 366 23.8
Haze_10522 Corylus avellana HOM05D003192 ORTHO05D003596 3.0e-12 77.4 495 24.6
CSS0015843 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 3.9e-12 77.0 378 26.7
BcaB03g12311 Brassica carinata HOM05D003192 ORTHO05D003596 6.6e-12 76.3 416 26.0
Sc03g0000330 Simmondsia chinensis HOM05D003192 ORTHO05D003596 1.9e-11 74.7 183 36.6
CSS0047518 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 3.3e-11 73.9 371 27.0
PGSC0003DMG400037454 Solanum tuberosum HOM05D003192 ORTHO05D003596 3.3e-11 73.9 432 25.5
Medtr2g009620 Medicago truncatula HOM05D003192 ORTHO05D003596 6.2e-10 69.7 360 26.9
ECA234G2607 Erigeron canadensis HOM05D003192 ORTHO05D003596 8.1e-10 69.3 344 27.0
Migut.B00551 Erythranthe guttata HOM05D003192 ORTHO05D003596 1.1e-09 68.9 408 25.7
Hma1.2p1_1093F.1_g256220 Hydrangea macrophylla HOM05D003192 ORTHO05D003596 1.1e-09 68.9 362 24.6
ECA233G2454 Erigeron canadensis HOM05D000169 ORTHO05D003596 1.4e-09 68.6 402 23.4
SGA_v2.0_scaffold83G26376 Striga asiatica HOM05D003192 ORTHO05D003596 1.8e-09 68.2 369 23.8
EL10Ac9g22072 Beta vulgaris HOM05D003192 ORTHO05D003596 2.3e-09 67.8 377 24.9
Lj6g0024173 Lotus japonicus HOM05D003192 ORTHO05D003596 2.3e-09 67.8 135 33.3
arahy.Tifrunner.gnm1.ann1.T6BZ3D Arachis hypogaea HOM05D003192 ORTHO05D003596 3.1e-09 67.4 417 23.3
Glyma.13G256600 Glycine max HOM05D003192 ORTHO05D003596 4.0e-09 67.0 370 26.5
Atru.chr6.1256 Acer truncatum HOM05D003192 ORTHO05D003596 5.2e-09 66.6 131 35.9
arahy.Tifrunner.gnm1.ann1.88QBIW Arachis hypogaea HOM05D003192 ORTHO05D003596 1.5e-08 65.1 460 23.3
Glyma.15G058300 Glycine max HOM05D003192 ORTHO05D003596 2.6e-08 64.3 382 24.6
arahy.Tifrunner.gnm1.ann1.Y4FDPH Arachis hypogaea HOM05D003192 ORTHO05D003596 3.4e-08 63.9 460 23.3
MSTRG.20280 Avicennia marina HOM05D003192 ORTHO05D003596 5.8e-08 63.2 372 24.7
Atru.chr6.1263 Acer truncatum HOM05D003192 ORTHO05D003596 7.6e-08 62.8 404 26.7
PSO782G1877 Papaver somniferum HOM05D003192 ORTHO05D003596 7.6e-08 62.8 368 23.4
MBI16_g12462_MAGBIO Magnolia biondii HOM05D003192 ORTHO05D003596 9.9e-08 62.4 398 23.9
VMungo0299G0001 Vigna mungo HOM05D003192 ORTHO05D003596 1.3e-07 62.0 366 24.6
Lalb_Chr20g0122921 Lupinus albus HOM05D003192 ORTHO05D003596 1.7e-07 61.6 351 25.4
DCAR_014184 Daucus carota HOM05D003192 ORTHO05D003596 3.7e-07 60.5 419 24.3
Oeu063542.1 Olea europaea HOM05D003192 ORTHO05D003596 4.9e-07 60.1 462 24.2
Sc08g0003910 Simmondsia chinensis HOM05D003192 ORTHO05D003596 6.4e-07 59.7 413 22.8
arahy.Tifrunner.gnm1.ann1.CWW4UK Arachis hypogaea HOM05D003192 ORTHO05D003596 8.4e-07 59.3 417 22.5
AUR62027110 Chenopodium quinoa HOM05D003192 ORTHO05D003596 8.4e-07 59.3 411 22.6
PSO063G1758 Papaver somniferum HOM05D003192 ORTHO05D003596 8.4e-07 59.3 382 22.5
Ca_00164_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 3.2e-06 57.4 351 25.1
Actinidia02392 Actinidia chinensis HOM05D003192 ORTHO05D003596 4.1e-06 57.0 349 26.1
AUR62012886 Chenopodium quinoa HOM05D003192 ORTHO05D003596 4.1e-06 57.0 396 22.5
Ah.01g007410 Amaranthus hybridus HOM05D003192 ORTHO05D003596 7.1e-06 56.2 362 22.4


User provided reference genes

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