Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0008653 Lotus japonicus HOM05D007850 ORTHO05D009594 8.3e-35 149.8 76 100.0
Glyma.07G125500 Glycine max HOM05D007850 ORTHO05D009594 7.8e-25 116.7 76 81.6
Glyma.01G006200 Glycine max HOM05D007850 ORTHO05D009594 1.5e-23 112.5 76 77.6
Phvul.004G174800 Phaseolus vulgaris HOM05D007850 ORTHO05D009594 1.2e-22 109.4 76 77.6
Ca_25585_v3 Cicer arietinum L. HOM05D007850 ORTHO05D009594 4.0e-21 104.4 77 74.0
Psat1g048160 Pisum sativum HOM05D007850 ORTHO05D009594 6.8e-21 103.6 78 73.1
Lalb_Chr22g0352511 Lupinus albus HOM05D007850 ORTHO05D009594 8.3e-19 96.7 77 75.3
TPR.G33528 Trifolium pratense HOM05D007850 ORTHO05D009594 1.9e-18 95.5 80 68.8
arahy.Tifrunner.gnm1.ann1.X02Y3Q Arachis hypogaea HOM05D007850 ORTHO05D009594 4.1e-18 94.4 77 70.1
Haze_25835 Corylus avellana HOM05D007850 ORTHO05D009594 1.1e-15 86.3 75 66.7
Gohir.A06G068000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.9e-15 85.5 77 63.6
Manes.03G028100 Manihot esculenta HOM05D007850 ORTHO05D009594 2.5e-15 85.1 76 64.5
Cfa003164 Carpinus fangiana HOM05D007850 ORTHO05D009594 5.6e-15 84.0 73 67.1
Eucgr.K01055 Eucalyptus grandis HOM05D007850 ORTHO05D009594 9.5e-15 83.2 75 62.7
Medtr6g090490 Medicago truncatula HOM05D007850 ORTHO05D009594 9.5e-15 83.2 75 64.0
arahy.Tifrunner.gnm1.ann1.X1KXE8 Arachis hypogaea HOM05D012186 ORTHO05D009594 1.2e-14 82.8 69 69.6
Duzib168G0149 Durio zibethinus HOM05D007850 ORTHO05D009594 1.6e-14 82.4 74 67.6
Sabra12G0079700 Salix brachista HOM05D007850 ORTHO05D009594 2.8e-14 81.6 72 62.5
Gohir.D06G066600 Gossypium hirsutum HOM05D007850 ORTHO05D009594 4.7e-14 80.9 76 64.5
Thecc.09G099000 Theobroma cacao HOM05D007850 ORTHO05D009594 4.7e-14 80.9 74 64.9
Potri.015G106700 Populus trichocarpa HOM05D007850 ORTHO05D009594 6.2e-14 80.5 78 64.1
QL08p048105 Quercus lobata HOM05D007850 ORTHO05D009594 6.2e-14 80.5 77 61.0
Gohir.A08G243300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.4e-13 79.3 81 61.7
Gohir.D08G264200 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.4e-13 79.3 81 61.7
Gorai.004G282100 Gossypium raimondii HOM05D007850 ORTHO05D009594 1.4e-13 79.3 81 61.7
Actinidia17514 Actinidia chinensis HOM05D007850 ORTHO05D009594 1.8e-13 79.0 71 64.8
Gorai.010G078100 Gossypium raimondii HOM05D007850 ORTHO05D009594 2.4e-13 78.6 76 63.2
Hma1.2p1_0208F.1_g088080 Hydrangea macrophylla HOM05D007850 ORTHO05D009594 2.4e-13 78.6 74 58.1
Nn8g39046 Nelumbo nucifera HOM05D007850 ORTHO05D009594 3.1e-13 78.2 78 61.5
Cpa.g.sc78.26 Carica papaya HOM05D007850 ORTHO05D009594 4.0e-13 77.8 73 61.6
Solyc12g008560.1 Solanum lycopersicum HOM05D007850 ORTHO05D009594 4.0e-13 77.8 74 56.8
DCAR_012035 Daucus carota HOM05D007850 ORTHO05D009594 8.9e-13 76.6 72 61.1
QL03p050300 Quercus lobata HOM05D007850 ORTHO05D009594 1.2e-12 76.3 77 59.7
ClCG03G016060 Citrullus lanatus HOM05D007850 ORTHO05D009594 1.5e-12 75.9 76 60.5
DCAR_000091 Daucus carota HOM05D007850 ORTHO05D009594 2.0e-12 75.5 72 61.1
DCAR_012032 Daucus carota HOM05D007850 ORTHO05D009594 2.0e-12 75.5 72 61.1
SalBow6G1226 Salvia bowleyana HOM05D007850 ORTHO05D009594 2.0e-12 75.5 77 57.1
Sed0003200 Sechium edule HOM05D007850 ORTHO05D009594 3.4e-12 74.7 74 58.1
Gohir.D07G009300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 4.4e-12 74.3 74 62.2
Gorai.001G009500 Gossypium raimondii HOM05D007850 ORTHO05D009594 4.4e-12 74.3 74 62.2
Peaxi162Scf00944g00009 Petunia axillaris HOM05D007850 ORTHO05D009594 4.4e-12 74.3 74 54.1
PGSC0003DMG400000292 Solanum tuberosum HOM05D007850 ORTHO05D009594 4.4e-12 74.3 74 54.1
CANSAT56G2953 Cannabis sativa HOM05D007850 ORTHO05D009594 7.6e-12 73.6 72 61.1
Gohir.A07G009000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 7.6e-12 73.6 74 62.2
Nitab4.5_0003079g0010 Nicotiana tabacum HOM05D007850 ORTHO05D009594 7.6e-12 73.6 74 54.1
MELO3C015421.2 Cucumis melo HOM05D007850 ORTHO05D009594 2.2e-11 72.0 76 59.2
Nitab4.5_0000566g0200 Nicotiana tabacum HOM05D007850 ORTHO05D009594 2.2e-11 72.0 74 54.1
TAR624G0098 Trochodendron aralioides HOM05D007850 ORTHO05D009594 2.2e-11 72.0 80 56.2
Rhsim05G0038300 Rhododendron simsii HOM05D007850 ORTHO05D009594 4.9e-11 70.9 78 52.6
Sc18g0001560 Simmondsia chinensis HOM05D007850 ORTHO05D009594 4.9e-11 70.9 72 58.3
Cc06_g10600 Coffea canephora HOM05D007850 ORTHO05D009594 6.4e-11 70.5 73 54.8
FAN26G0602 Fragaria x ananassa HOM05D007850 ORTHO05D009594 8.4e-11 70.1 79 53.2
FAN26G2005 Fragaria x ananassa HOM05D007850 ORTHO05D009594 8.4e-11 70.1 79 53.2
FAN28G1089 Fragaria x ananassa HOM05D007850 ORTHO05D009594 1.1e-10 69.7 79 53.2
arahy.Tifrunner.gnm1.ann1.1KH3J5 Arachis hypogaea HOM05D007850 ORTHO05D009594 1.4e-10 69.3 75 54.7
arahy.Tifrunner.gnm1.ann1.THK1KM Arachis hypogaea HOM05D007850 ORTHO05D009594 1.4e-10 69.3 75 54.7
EL10Ac8g18368 Beta vulgaris HOM05D007850 ORTHO05D009594 1.4e-10 69.3 75 56.0
FAN23G2338 Fragaria x ananassa HOM05D007850 ORTHO05D009594 1.4e-10 69.3 78 51.3
COL.COLO4_34726 Corchorus olitorius HOM05D007850 ORTHO05D009594 1.9e-10 68.9 46 73.9
FvH4_1g06390 Fragaria vesca HOM05D007850 ORTHO05D009594 1.9e-10 68.9 79 51.9
FAN19G1200 Fragaria x ananassa HOM05D007850 ORTHO05D009594 1.9e-10 68.9 79 51.9
Prupe.7G218200 Prunus persica HOM05D007850 ORTHO05D009594 1.9e-10 68.9 70 58.6
CSS0000041 Camellia sinensis var. sinensis HOM05D007850 ORTHO05D009594 7.1e-10 67.0 79 54.4
Ah.09g230500 Amaranthus hybridus HOM05D007850 ORTHO05D009594 9.2e-10 66.6 58 60.3
Sopen12g003500 Solanum pennellii HOM05D007850 ORTHO05D009594 9.2e-10 66.6 66 56.1
RcHm_v2.0_Chr2g0092131 Rosa chinensis HOM05D007850 ORTHO05D009594 1.6e-09 65.9 77 50.6
ATR0705G131 Amborella trichopoda HOM05D007850 ORTHO05D009594 3.5e-09 64.7 73 47.9
AUR62010878 Chenopodium quinoa HOM05D007850 ORTHO05D009594 4.6e-09 64.3 76 51.3
Ciclev10010071m.g Citrus clementina HOM05D007850 ORTHO05D009594 6.0e-09 63.9 73 47.9
Lsat_1_v5_gn_7_39541 Lactuca sativa HOM05D007850 ORTHO05D009594 6.0e-09 63.9 47 72.3
Aqoxy7G01385 Aquilegia oxysepala HOM05D007850 ORTHO05D009594 1.3e-08 62.8 71 56.3
AUR62021391 Chenopodium quinoa HOM05D007850 ORTHO05D009594 1.3e-08 62.8 76 51.3
CAN.G1591.18 Capsicum annuum HOM05D007850 ORTHO05D009594 3.0e-08 61.6 76 48.7
CAN.G2021.4 Capsicum annuum HOM05D007850 ORTHO05D009594 3.0e-08 61.6 76 48.7
Ciclev10006350m.g Citrus clementina HOM05D007850 ORTHO05D009594 1.1e-07 59.7 73 45.2
unitig_8.g4473 Utricularia gibba HOM05D007850 ORTHO05D009594 1.5e-07 59.3 66 53.0
CAN.G1677.12 Capsicum annuum HOM05D007850 ORTHO05D009594 1.9e-07 58.9 76 47.4
CAN.G1357.32 Capsicum annuum HOM05D007850 ORTHO05D009594 4.3e-07 57.8 76 47.4
CsaV3_1G039900 Cucumis sativus L. HOM05D007850 ORTHO05D009594 4.3e-07 57.8 53 62.3
CAN.G1349.15 Capsicum annuum HOM05D007850 ORTHO05D009594 1.2e-06 56.2 76 46.1
CAN.G1084.1 Capsicum annuum HOM05D007850 ORTHO05D009594 2.8e-06 55.1 76 46.1
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 3.6e-06 54.7 65 50.8
CDE06G1893 Ceratophyllum demersum HOM05D007850 ORTHO05D009594 4.7e-06 54.3 50 62.0
SEGI_13362 Sequoiadendron giganteum HOM05D007850 ORTHO05D009594 4.7e-06 54.3 52 51.9
Actinidia21359 Actinidia chinensis HOM05D007850 ORTHO05D009594 6.2e-06 53.9 85 47.1


User provided reference genes

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