Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 1.3e-194 682.9 349 100.0
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 4.7e-149 531.6 347 79.8
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 7.9e-149 530.8 348 79.0
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 1.4e-148 530.0 352 78.1
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 1.8e-148 529.6 351 78.3
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 5.2e-140 501.5 360 74.2
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 9.7e-139 497.3 348 75.9
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 8.0e-133 477.6 356 69.7
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 8.0e-133 477.6 356 69.7
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 1.4e-129 466.8 364 67.0
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 1.2e-117 427.2 326 64.7
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.1e-117 426.4 326 64.7
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.1e-117 426.4 326 64.7
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 1.8e-116 423.3 309 69.3
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 6.8e-116 421.4 291 71.1
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 2.0e-115 419.9 368 60.1
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 4.4e-115 418.7 367 61.3
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 9.8e-115 417.5 320 65.9
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 1.7e-114 416.8 310 68.7
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 1.4e-113 413.7 358 59.8
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 1.4e-113 413.7 328 66.2
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 1.4e-113 413.7 320 64.4
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 3.5e-112 409.1 370 58.1
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 3.5e-112 409.1 287 70.7
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 4.6e-112 408.7 322 64.9
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 5.0e-111 405.2 329 61.4
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 2.5e-110 402.9 300 67.0
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 2.5e-110 402.9 327 64.5
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 7.3e-110 401.4 297 67.7
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 9.5e-110 401.0 363 57.0
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 3.6e-109 399.1 333 64.0
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 3.6e-109 399.1 353 61.2
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 4.7e-109 398.7 355 60.0
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 6.2e-109 398.3 327 64.2
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 1.4e-108 397.1 327 64.2
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 8.9e-108 394.4 348 58.6
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 8.9e-108 394.4 322 61.2
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 1.5e-107 393.7 351 59.0
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 2.6e-107 392.9 308 64.3
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 5.8e-107 391.7 347 58.5
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 5.8e-107 391.7 347 58.5
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 5.8e-107 391.7 374 56.4
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 9.8e-107 391.0 345 57.7
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 1.3e-106 390.6 353 58.4
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 2.9e-106 389.4 351 59.3
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 1.1e-105 387.5 287 66.9
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 2.4e-105 386.3 361 59.0
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 1.6e-104 383.6 304 64.5
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 2.0e-104 383.3 359 55.4
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 3.5e-104 382.5 297 67.3
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 7.8e-104 381.3 300 63.7
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 4.3e-102 375.6 306 62.4
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 4.3e-102 375.6 315 59.0
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 5.6e-102 375.2 286 63.3
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 1.2e-101 374.0 290 64.8
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 1.6e-101 373.6 342 56.1
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.0e-99 366.7 302 62.3
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 2.6e-99 366.3 325 61.2
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 4.4e-99 365.5 347 55.3
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 2.2e-98 363.2 276 65.6
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 3.7e-98 362.5 309 59.5
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 3.7e-98 362.5 287 62.7
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 8.3e-98 361.3 357 53.8
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 1.1e-97 360.9 332 56.6
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 1.4e-97 360.5 287 62.4
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 2.4e-97 359.8 287 62.0
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 3.2e-97 359.4 286 62.9
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 3.2e-97 359.4 374 54.0
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.2e-97 359.4 298 62.1
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 3.2e-97 359.4 317 57.7
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 4.1e-97 359.0 338 55.6
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 7.1e-97 358.2 281 63.0
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 4.6e-96 355.5 341 56.0
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 6.0e-96 355.1 287 62.4
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 7.8e-96 354.8 304 58.9
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 7.8e-96 354.8 364 53.0
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 1.5e-94 350.5 302 59.9
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.9e-94 350.1 312 57.4
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 3.3e-94 349.4 304 58.9
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 2.1e-93 346.7 273 61.5
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 6.8e-92 341.7 257 63.8
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 1.7e-90 337.0 312 55.4
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 1.7e-90 337.0 334 55.4
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 9.2e-89 331.3 303 56.8
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 3.5e-88 329.3 318 55.7
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 7.3e-86 321.6 377 48.8
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 6.9e-84 315.1 228 68.9
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.2e-83 314.3 263 58.6
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 1.3e-82 310.8 300 53.0
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 6.4e-82 308.5 287 55.7
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 2.1e-80 303.5 281 53.0
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 2.7e-80 303.1 308 52.6
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 1.3e-79 300.8 280 57.9
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 1.9e-78 297.0 290 57.2
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 4.0e-76 289.3 214 72.4
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 9.3e-73 278.1 238 66.8
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 4.6e-72 275.8 291 50.9
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 1.6e-69 267.3 311 45.3
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 3.7e-69 266.2 295 49.2
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 3.7e-69 266.2 289 46.7
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 9.0e-68 261.5 288 47.2
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 9.3e-65 251.5 229 55.5
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 3.8e-58 229.6 293 47.1
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 1.6e-56 224.2 290 45.9
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 1.0e-55 221.5 290 45.9
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 5.7e-54 215.7 290 45.9
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 6.5e-50 202.2 184 59.8
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 9.3e-49 198.4 316 40.5
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 6.1e-48 195.7 171 58.5
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 7.9e-48 195.3 174 59.2
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 6.7e-47 192.2 304 40.1
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 1.7e-45 187.6 182 54.4
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 2.0e-43 180.6 161 62.7
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 1.3e-42 177.9 288 38.2
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 3.8e-42 176.4 189 50.8
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 6.5e-42 175.6 314 37.9
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 2.3e-39 167.2 107 67.3
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 1.8e-36 157.5 102 68.6
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 9.1e-36 155.2 138 52.2
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.4e-33 147.9 166 46.4
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 3.3e-30 136.7 125 60.0
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 2.4e-28 130.6 229 36.2
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 1.1e-25 121.7 186 37.6
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 6.7e-23 112.5 64 71.9
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.0e-22 110.9 124 44.4
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 5.3e-20 102.8 63 68.3
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.6e-19 101.3 64 68.8
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 5.9e-19 99.4 65 67.7
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 3.8e-18 96.7 71 60.6
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 9.4e-17 92.0 53 73.6
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 1.2e-16 91.7 54 74.1
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 3.7e-13 80.1 95 35.8
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 2.3e-10 70.9 87 44.8
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 1.5e-09 68.2 50 60.0
RcHm_v2.0_Chr7g0224811 Rosa chinensis HOM05D005912 ORTHO05D007329 4.7e-08 63.2 60 63.3
RcHm_v2.0_Chr4g0418411 Rosa chinensis HOM05D005912 ORTHO05D007329 1.0e-07 62.0 60 61.7
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.0e-07 62.0 78 39.7


User provided reference genes

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