Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 1.4e-30 135.6 68 100.0
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 2.2e-23 111.7 68 76.5
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 8.5e-23 109.8 68 75.0
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 8.5e-23 109.8 68 75.0
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 4.2e-22 107.5 61 80.3
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 5.5e-22 107.1 65 76.9
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 7.2e-22 106.7 68 70.6
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 1.2e-21 105.9 61 80.3
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 2.7e-21 104.8 70 70.0
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 9.7e-19 96.3 72 66.7
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 8.3e-18 93.2 60 73.3
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 1.4e-17 92.4 60 75.0
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 1.8e-17 92.0 60 71.7
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 1.2e-16 89.4 60 73.3
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 1.2e-16 89.4 64 70.3
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 7.7e-16 86.7 56 76.8
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 7.7e-16 86.7 64 68.8
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 7.7e-16 86.7 64 67.2
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 1.0e-15 86.3 62 66.1
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 1.0e-15 86.3 60 71.7
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 1.7e-15 85.5 60 71.7
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 2.2e-15 85.1 64 65.6
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 2.9e-15 84.7 59 72.9
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 5.0e-15 84.0 60 68.3
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 6.5e-15 83.6 56 73.2
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 8.5e-15 83.2 60 66.7
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 1.9e-14 82.0 60 66.7
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 1.9e-14 82.0 60 66.7
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 3.2e-14 81.3 61 67.2
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 3.2e-14 81.3 60 70.0
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 4.2e-14 80.9 60 65.0
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 4.2e-14 80.9 52 71.2
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 5.5e-14 80.5 61 65.6
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 5.5e-14 80.5 61 65.6
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 9.4e-14 79.7 60 65.0
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 9.4e-14 79.7 60 63.3
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 1.2e-13 79.3 60 65.0
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 1.2e-13 79.3 61 65.6
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.2e-13 79.3 61 65.6
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 1.6e-13 79.0 52 69.2
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 6.1e-13 77.0 59 59.3
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 8.0e-13 76.6 51 70.6
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 1.0e-12 76.3 52 69.2
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 1.4e-12 75.9 61 62.3
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 1.4e-12 75.9 57 64.9
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 3.0e-12 74.7 64 57.8
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 3.0e-12 74.7 60 60.0
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 4.0e-12 74.3 54 66.7
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 6.8e-12 73.6 66 57.6
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 6.8e-12 73.6 60 61.7
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 6.8e-12 73.6 56 66.1
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 8.8e-12 73.2 57 63.2
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 1.2e-11 72.8 63 61.9
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 2.0e-11 72.0 66 53.0
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 2.0e-11 72.0 55 60.0
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 2.0e-11 72.0 57 63.2
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 3.4e-11 71.2 59 55.9
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 3.4e-11 71.2 59 55.9
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 3.4e-11 71.2 62 56.5
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 3.4e-11 71.2 50 66.0
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 3.4e-11 71.2 66 57.6
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 4.4e-11 70.9 66 53.0
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 4.4e-11 70.9 66 53.0
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 7.5e-11 70.1 55 63.6
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 7.5e-11 70.1 55 63.6
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 7.5e-11 70.1 55 58.2
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 7.5e-11 70.1 55 63.6
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 7.5e-11 70.1 62 58.1
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 9.8e-11 69.7 54 61.1
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 9.8e-11 69.7 54 61.1
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 1.3e-10 69.3 52 59.6
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 1.7e-10 68.9 59 59.3
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 1.7e-10 68.9 59 59.3
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 2.8e-10 68.2 66 50.0
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 4.8e-10 67.4 63 50.8
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 8.3e-10 66.6 70 47.1
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 8.3e-10 66.6 61 55.7
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 1.4e-09 65.9 65 50.8
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 1.8e-09 65.5 62 51.6
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 2.4e-09 65.1 56 58.9
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 4.1e-09 64.3 77 49.4
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 4.1e-09 64.3 54 59.3
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 2.9e-07 58.2 57 47.4
Zm00001eb388110 Zea mays HOM05D007790 ORTHO05D009880 6.6e-07 57.0 34 64.7
PGSC0003DMG401005708 Solanum tuberosum HOM05D007790 ORTHO05D009880 8.6e-07 56.6 36 69.4
HanXRQChr05g0152891 Helianthus annuus HOM05D007790 ORTHO05D009880 1.5e-06 55.8 52 55.8


User provided reference genes

Program Settings