Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0008424 Lotus japonicus HOM05D007238 ORTHO05D009206 6.7e-277 956.8 491 100.0
Glyma.09G213700 Glycine max HOM05D007238 ORTHO05D009206 9.2e-210 733.8 495 78.4
arahy.Tifrunner.gnm1.ann1.0046K4 Arachis hypogaea HOM05D007238 ORTHO05D009206 6.0e-209 731.1 494 78.5
arahy.Tifrunner.gnm1.ann1.BJTL8K Arachis hypogaea HOM05D007238 ORTHO05D009206 6.0e-209 731.1 494 78.5
Glyma.01G149500 Glycine max HOM05D007238 ORTHO05D009206 8.6e-208 727.2 495 78.6
VMungo1215G3455 Vigna mungo HOM05D007238 ORTHO05D009206 1.9e-207 726.1 493 77.7
Lalb_Chr05g0215441 Lupinus albus HOM05D007238 ORTHO05D009206 6.2e-206 721.1 492 76.8
TPR.G17266 Trifolium pratense HOM05D007238 ORTHO05D009206 1.1e-205 720.3 494 77.3
Medtr5g026850 Medicago truncatula HOM05D007238 ORTHO05D009206 6.8e-205 717.6 498 76.7
Ca_25102_v3 Cicer arietinum L. HOM05D007238 ORTHO05D009206 4.9e-203 711.4 492 77.6
Phvul.002G128600 Phaseolus vulgaris HOM05D007238 ORTHO05D009206 4.9e-203 711.4 493 77.3
Psat2g142200 Pisum sativum HOM05D007238 ORTHO05D009206 7.1e-162 574.7 391 75.2
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 2.5e-146 523.1 493 60.9
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 7.2e-146 521.5 497 61.0
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 2.1e-145 520.0 493 60.6
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 1.8e-144 516.9 495 59.4
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 1.7e-142 510.4 493 59.4
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 2.2e-142 510.0 494 60.1
Ciclev10000885m.g Citrus clementina HOM05D007238 ORTHO05D009206 5.3e-141 505.4 498 58.6
CiPaw.12G071800 Carya illinoinensis HOM05D007238 ORTHO05D009206 8.5e-139 498.0 490 59.8
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 2.5e-138 496.5 494 59.3
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 9.4e-138 494.6 495 58.0
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.1e-137 493.4 496 58.5
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 4.7e-137 492.3 494 57.9
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 1.0e-136 491.1 496 58.3
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 1.0e-136 491.1 496 58.7
Manes.17G003400 Manihot esculenta HOM05D007238 ORTHO05D009206 2.8e-134 483.0 500 58.2
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 4.8e-134 482.3 494 57.9
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 1.2e-132 477.6 495 57.0
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 1.0e-131 474.6 498 56.4
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.5e-130 470.7 556 52.3
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 4.2e-130 469.2 498 55.6
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 5.5e-130 468.8 497 56.5
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 1.6e-129 467.2 496 56.0
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 6.7e-128 461.8 556 51.8
TWI56G0348 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 1.5e-127 460.7 494 56.9
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.6e-127 459.9 557 51.9
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 4.4e-127 459.1 501 55.5
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 7.5e-127 458.4 523 54.5
Sed0015204 Sechium edule HOM05D007238 ORTHO05D009206 7.5e-127 458.4 495 54.5
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 9.7e-127 458.0 502 55.6
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 1.3e-126 457.6 521 53.7
Cc08_g05060 Coffea canephora HOM05D007238 ORTHO05D009206 2.2e-126 456.8 495 54.1
Duzib205G0751 Durio zibethinus HOM05D007238 ORTHO05D009206 6.3e-126 455.3 553 50.5
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 2.0e-124 450.3 496 55.6
CsaV3_3G001050 Cucumis sativus L. HOM05D007238 ORTHO05D009206 5.0e-123 445.7 467 55.0
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 5.7e-119 432.2 494 53.2
Haze_08066 Corylus avellana HOM05D007238 ORTHO05D009206 1.1e-117 427.9 572 48.1
Cfa012591 Carpinus fangiana HOM05D007238 ORTHO05D009206 1.1e-114 417.9 420 57.6
ClCG10G001020 Citrullus lanatus HOM05D007238 ORTHO05D009206 3.7e-110 402.9 493 49.9
Solyc08g075760.3 Solanum lycopersicum HOM05D007238 ORTHO05D009206 3.7e-110 402.9 498 48.4
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 4.9e-110 402.5 499 50.9
Sopen08g024410 Solanum pennellii HOM05D007238 ORTHO05D009206 1.8e-109 400.6 498 48.2
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 2.4e-109 400.2 505 49.7
Lsat_1_v5_gn_3_92801 Lactuca sativa HOM05D007238 ORTHO05D009206 4.1e-109 399.4 499 51.3
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 3.5e-108 396.4 499 49.3
PGR031G3591 Punica granatum HOM05D007238 ORTHO05D009206 2.9e-107 393.3 430 56.5
Actinidia32774 Actinidia chinensis HOM05D007238 ORTHO05D009206 6.6e-107 392.1 496 49.8
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 6.6e-107 392.1 508 49.6
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 1.9e-106 390.6 491 50.1
PGSC0003DMG400030852 Solanum tuberosum HOM05D007238 ORTHO05D009206 1.2e-103 381.3 507 46.7
CAN.G1363.6 Capsicum annuum HOM05D007238 ORTHO05D009206 2.9e-102 376.7 502 46.8
MELO3C013794.2 Cucumis melo HOM05D007238 ORTHO05D009206 1.1e-101 374.8 355 59.7
DCAR_008182 Daucus carota HOM05D007238 ORTHO05D009206 1.4e-101 374.4 512 48.4
PSO063G0400 Papaver somniferum HOM05D007238 ORTHO05D009206 1.8e-101 374.0 504 49.6
Prupe.5G020000 Prunus persica HOM05D007238 ORTHO05D009206 6.6e-99 365.5 442 50.9
FAN04G0931 Fragaria x ananassa HOM05D007238 ORTHO05D009206 8.9e-96 355.1 408 52.9
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 2.4e-93 347.1 494 45.3
Rhsim11G0025000 Rhododendron simsii HOM05D007238 ORTHO05D009206 5.4e-93 345.9 446 49.6
ATR0829G060 Amborella trichopoda HOM05D007238 ORTHO05D009206 1.1e-88 331.6 528 43.9
DCAR_004239 Daucus carota HOM05D007238 ORTHO05D009206 1.3e-86 324.7 467 46.7
Migut.E01348 Erythranthe guttata HOM05D007238 ORTHO05D009206 1.3e-86 324.7 471 49.0
Zm00001eb378870 Zea mays HOM05D007238 ORTHO05D009206 1.1e-85 321.6 495 44.8
Zm00001eb269110 Zea mays HOM05D007238 ORTHO05D009206 3.5e-84 316.6 502 44.8
Peaxi162Scf02295g00022 Petunia axillaris HOM05D007238 ORTHO05D009206 1.0e-83 315.1 494 42.3
SalBow8G0140 Salvia bowleyana HOM05D007238 ORTHO05D009206 2.5e-82 310.5 408 51.7
vmacro00062 Vaccinium macrocarpon HOM05D007238 ORTHO05D009206 2.7e-76 290.4 371 50.7
PSO782G1267 Papaver somniferum HOM05D007238 ORTHO05D009206 8.9e-72 275.4 414 46.6
Cpa.g.sc90.44 Carica papaya HOM05D007238 ORTHO05D009206 3.3e-66 256.9 323 48.9
Hma1.2p1_1933F.1_g308070 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 4.6e-60 236.5 254 54.7
PSO782G4691 Papaver somniferum HOM05D007238 ORTHO05D009206 1.1e-40 172.2 314 40.1
HanXRQChr03g0081161 Helianthus annuus HOM05D007238 ORTHO05D009206 4.3e-34 150.2 318 37.7
HPP92_002457 Vanilla planifolia HOM05D000907 ORTHO05D000753 8.5e-30 136.0 286 36.7
arahy.Tifrunner.gnm1.ann1.DKTU9V Arachis hypogaea HOM05D007238 ORTHO05D009206 1.0e-27 129.0 288 38.9
Duzib068G0324 Durio zibethinus HOM05D007238 ORTHO05D009206 6.3e-25 119.8 79 82.3
SEGI_10751 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 1.8e-24 118.2 286 32.9
HanXRQChr17g0554671 Helianthus annuus HOM05D007238 ORTHO05D009206 1.2e-23 115.5 159 49.1
Pp3c23_22500 Physcomitrium patens HOM05D007238 ORTHO05D009206 1.7e-22 111.7 556 29.7
SEGI_32460 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 2.9e-22 110.9 76 80.3
HPP92_025938 Vanilla planifolia HOM05D007238 ORTHO05D009206 9.4e-21 105.9 68 83.8
SEGI_26764 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 1.6e-20 105.1 160 42.5
HPP92_022728 Vanilla planifolia HOM05D007238 ORTHO05D009206 2.7e-20 104.4 187 40.1
CSS0023317 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 1.3e-17 95.5 53 90.6
Hma1.2p1_0544F.1_g175540 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 2.8e-17 94.4 62 69.4
Cpa.g.sc90.43 Carica papaya HOM05D007238 ORTHO05D009206 6.3e-17 93.2 61 70.5
HanXRQChr03g0081141 Helianthus annuus HOM05D007238 ORTHO05D009206 1.2e-15 89.0 65 63.1
Actinidia14160 Actinidia chinensis HOM05D007238 ORTHO05D009206 8.0e-12 76.3 44 84.1
AagrBONN_evm.TU.Sc2ySwM_228.587 Anthoceros agrestis HOM05D007238 ORTHO05D009206 3.0e-11 74.3 250 33.6
HanXRQChr09g0247011 Helianthus annuus HOM05D007238 ORTHO05D009206 1.2e-10 72.4 40 87.5
arahy.Tifrunner.gnm1.ann1.HBQ3NA Arachis hypogaea HOM05D007238 ORTHO05D009206 5.7e-10 70.1 61 67.2
arahy.Tifrunner.gnm1.ann1.M9N5E0 Arachis hypogaea HOM05D007238 ORTHO05D009206 5.7e-10 70.1 61 67.2
HanXRQChr03g0081151 Helianthus annuus HOM05D007238 ORTHO05D009206 3.5e-07 60.8 53 60.4
FvH4_5g27461 Fragaria vesca HOM05D007238 ORTHO05D009206 3.8e-06 57.4 64 51.6


User provided reference genes

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