Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 1.1e-189 666.4 329 100.0
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 7.2e-168 594.0 329 89.4
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 5.2e-166 587.8 329 87.5
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 9.7e-165 583.6 329 86.6
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 9.7e-165 583.6 329 86.6
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.4e-163 579.7 330 87.9
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 3.2e-160 568.5 331 84.6
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 4.2e-160 568.2 329 85.7
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 5.2e-158 561.2 329 84.5
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 7.5e-157 557.4 329 83.9
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 7.5e-149 530.8 329 81.5
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 4.5e-146 521.5 329 79.3
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.7e-140 503.1 330 77.3
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 2.4e-139 499.2 330 76.4
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 7.8e-138 494.2 331 75.8
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 5.0e-137 491.5 329 74.5
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 3.3e-136 488.8 329 74.5
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 9.5e-136 487.3 330 73.0
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 2.1e-135 486.1 330 72.7
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.8e-134 483.0 329 72.6
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 3.1e-134 482.3 335 73.7
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 2.6e-133 479.2 349 71.6
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 3.4e-133 478.8 343 72.0
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 3.4e-133 478.8 340 71.8
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.3e-132 476.9 340 72.9
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 4.9e-132 474.9 330 72.1
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 6.4e-132 474.6 334 72.2
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 6.4e-132 474.6 325 71.7
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.4e-131 473.4 338 71.6
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 5.4e-131 471.5 334 71.6
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 7.0e-131 471.1 330 71.8
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 9.2e-131 470.7 342 70.2
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 4.6e-130 468.4 386 65.0
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.5e-128 463.4 338 69.8
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.3e-128 461.8 329 71.1
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 8.1e-127 457.6 385 63.4
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 8.1e-127 457.6 331 70.7
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 8.1e-127 457.6 329 68.1
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 3.1e-126 455.7 330 69.4
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 6.8e-126 454.5 330 69.4
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 5.8e-125 451.4 390 63.6
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 9.9e-125 450.7 332 69.9
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 1.7e-124 449.9 337 69.4
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 2.9e-124 449.1 332 69.0
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 3.7e-124 448.7 330 70.9
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.7e-124 448.7 331 69.8
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 3.7e-124 448.7 333 68.2
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 6.4e-124 448.0 342 66.7
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 1.4e-123 446.8 330 70.6
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 1.4e-123 446.8 383 62.4
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 2.1e-122 443.0 384 62.0
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 3.5e-122 442.2 336 66.1
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 7.8e-122 441.0 330 69.1
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 2.3e-121 439.5 334 67.4
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 3.0e-121 439.1 425 57.2
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 6.6e-121 438.0 357 64.7
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.5e-120 436.0 388 60.3
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 9.5e-120 434.1 331 66.8
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 1.6e-119 433.3 375 61.3
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 2.1e-119 433.0 338 66.9
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 8.1e-119 431.0 340 67.6
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.4e-118 430.3 367 61.6
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 2.4e-118 429.5 331 66.5
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 3.1e-118 429.1 335 66.9
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 4.0e-118 428.7 355 63.1
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 6.8e-118 427.9 382 61.8
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.2e-117 427.2 257 77.8
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 4.4e-117 425.2 333 64.0
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 5.8e-117 424.9 257 77.4
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 9.9e-117 424.1 347 64.3
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.7e-116 423.3 305 71.5
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 2.4e-115 419.5 328 65.9
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 2.4e-115 419.5 418 55.3
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.0e-113 414.1 389 57.8
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 5.6e-112 408.3 391 58.1
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 2.8e-111 406.0 214 89.3
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 4.7e-111 405.2 207 91.3
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 6.2e-111 404.8 344 59.3
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.4e-110 403.7 341 61.9
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 3.1e-110 402.5 348 62.4
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 4.0e-110 402.1 333 62.8
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 9.0e-110 401.0 285 71.2
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 2.1e-106 389.8 350 61.1
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.7e-106 389.4 233 77.7
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 3.5e-106 389.0 263 70.0
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 8.7e-105 384.4 330 60.9
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 2.4e-102 376.3 365 57.0
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 3.1e-102 375.9 293 65.9
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.2e-101 374.0 334 58.7
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 2.6e-101 372.9 330 59.7
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 5.8e-101 371.7 330 59.1
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 1.3e-100 370.5 328 59.8
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 6.4e-100 368.2 483 45.8
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.4e-99 367.1 376 54.8
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 1.2e-98 364.0 319 61.8
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 3.3e-96 355.9 361 54.0
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 3.3e-96 355.9 325 59.1
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 7.4e-96 354.8 332 56.6
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.6e-95 353.6 341 56.6
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 2.1e-95 353.2 329 57.1
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.2e-92 343.2 386 51.3
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 3.2e-91 339.3 329 54.4
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.9e-88 330.1 334 52.1
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 1.1e-86 324.3 329 51.4
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 1.1e-86 324.3 329 51.4
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 6.9e-86 321.6 329 51.1
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 3.8e-84 315.8 329 51.4
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.9e-83 313.5 412 47.3
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 2.5e-83 313.2 329 50.8
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 3.2e-83 312.8 245 67.3
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 1.6e-82 310.5 329 50.5
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 1.0e-81 307.8 329 50.8
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 1.3e-81 307.4 330 50.0
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 8.7e-81 304.7 339 49.6
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 1.9e-80 303.5 329 49.2
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 6.9e-78 295.0 174 80.5
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.1e-72 277.7 167 77.2
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 6.3e-71 271.9 159 78.0
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 1.2e-69 267.7 253 57.3
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 5.9e-69 265.4 312 46.2
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.4e-62 244.2 305 45.6
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 9.1e-62 241.5 153 76.5
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 3.8e-60 236.1 150 78.7
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 6.1e-58 228.8 371 38.0
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 6.5e-52 208.8 191 59.7
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-46 191.0 119 79.0
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.8e-46 190.7 113 79.6
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 7.0e-38 162.2 100 78.0
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 3.5e-37 159.8 324 34.6
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 2.2e-31 140.6 101 67.3
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.6e-29 134.4 80 77.5
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 7.3e-27 125.6 124 60.5
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.8e-25 120.9 126 55.6
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.1e-19 101.7 55 76.4
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 4.0e-17 93.2 104 57.7
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 1.2e-16 91.7 55 83.6
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.2e-15 87.4 48 85.4
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 8.3e-15 85.5 53 69.8
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.7e-13 80.5 76 53.9
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 5.6e-11 72.8 376 20.7


User provided reference genes

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