Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 5.6e-156 554.3 290 100.0
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 2.7e-126 455.7 288 81.6
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 3.5e-126 455.3 288 82.6
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 3.5e-126 455.3 288 80.9
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 5.1e-125 451.4 288 81.2
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 5.1e-125 451.4 287 80.8
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 6.6e-125 451.1 288 79.9
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.9e-124 449.5 288 79.9
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.9e-124 449.5 288 80.9
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 7.4e-124 447.6 288 79.9
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 1.5e-116 423.3 290 74.8
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 6.5e-112 407.9 296 74.3
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.9e-111 406.4 288 70.8
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 1.9e-111 406.4 290 71.7
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 2.5e-111 406.0 289 74.0
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 3.2e-111 405.6 288 70.5
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 7.1e-111 404.4 290 72.8
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 7.1e-111 404.4 288 73.6
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 9.3e-111 404.1 287 72.5
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.2e-110 403.7 290 72.8
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.2e-110 403.7 291 71.1
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.6e-110 403.3 288 72.2
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 1.6e-110 403.3 290 72.4
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 2.1e-110 402.9 291 70.8
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 7.9e-110 401.0 291 70.8
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.0e-109 400.6 292 73.3
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.7e-109 397.9 291 70.1
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 1.1e-108 397.1 289 70.2
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 1.9e-108 396.4 291 70.1
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 2.5e-108 396.0 290 70.3
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 5.7e-108 394.8 300 70.7
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 7.4e-108 394.4 284 70.4
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 6.3e-107 391.3 288 69.8
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.4e-106 390.2 295 71.9
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 4.1e-106 388.7 290 69.0
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 4.5e-105 385.2 283 68.9
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 5.9e-105 384.8 290 68.6
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.0e-104 384.0 284 68.0
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 2.2e-104 382.9 290 68.3
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 2.9e-104 382.5 290 67.9
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 3.8e-104 382.1 245 80.0
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.2e-102 377.1 290 66.6
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.2e-102 377.1 292 68.2
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 6.1e-102 374.8 283 66.8
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 6.1e-102 374.8 284 66.9
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 6.1e-102 374.8 297 67.0
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.3e-101 373.6 291 69.1
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 2.3e-101 372.9 287 68.3
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 3.9e-101 372.1 284 67.3
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 6.7e-101 371.3 254 76.4
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 8.7e-101 370.9 259 73.7
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.1e-100 370.5 244 77.0
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.1e-100 370.5 273 70.7
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.5e-100 370.2 294 66.3
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 2.5e-100 369.4 273 70.7
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 3.3e-100 369.0 284 67.6
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 4.3e-100 368.6 283 65.7
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 5.7e-100 368.2 290 67.6
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 4.8e-99 365.2 291 66.3
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 8.2e-99 364.4 283 65.7
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.1e-98 364.0 288 67.7
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.4e-98 362.8 291 65.6
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 2.4e-98 362.8 290 65.9
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 9.0e-98 360.9 293 64.8
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.2e-97 360.5 290 65.5
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.5e-97 360.1 295 65.4
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.0e-97 359.8 292 65.8
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 2.6e-97 359.4 232 75.4
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 2.6e-97 359.4 290 65.9
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.5e-97 358.6 296 64.5
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 7.7e-97 357.8 282 65.6
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 2.2e-96 356.3 265 67.2
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 2.9e-96 355.9 293 64.8
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 3.8e-96 355.5 289 65.7
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 3.8e-96 355.5 287 66.2
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.1e-95 354.0 291 65.6
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 1.1e-95 354.0 289 64.4
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 7.2e-95 351.3 290 63.4
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 9.4e-95 350.9 230 75.2
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.2e-94 350.5 290 65.5
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 2.7e-94 349.4 287 65.9
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 2.7e-94 349.4 287 65.9
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 2.7e-94 349.4 287 65.9
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 6.1e-94 348.2 280 66.8
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.0e-93 347.4 296 63.2
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.0e-93 347.4 243 70.8
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 1.8e-93 346.7 275 66.5
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 1.8e-93 346.7 275 66.5
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 1.8e-93 346.7 275 66.5
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.8e-93 346.7 279 67.4
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 3.0e-93 345.9 284 64.8
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 3.0e-93 345.9 287 64.1
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 3.9e-93 345.5 287 64.5
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 5.1e-93 345.1 280 66.1
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 6.7e-93 344.7 287 64.5
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 8.8e-93 344.4 287 65.2
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 1.5e-92 343.6 325 59.1
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.5e-92 343.6 229 73.4
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.0e-92 343.2 296 61.5
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 3.3e-92 342.4 285 63.9
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 4.4e-92 342.0 280 65.7
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 3.7e-91 339.0 290 62.4
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 1.8e-90 336.7 290 61.4
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 7.7e-89 331.3 216 74.5
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 1.7e-88 330.1 279 64.9
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.1e-87 327.4 287 62.4
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.4e-87 327.0 290 61.7
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 3.2e-87 325.9 292 62.7
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 1.0e-85 320.9 229 70.7
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 9.7e-84 314.3 237 65.8
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 3.7e-83 312.4 299 58.5
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 8.2e-83 311.2 252 65.1
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 2.0e-81 306.6 279 59.5
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 6.5e-80 301.6 220 71.4
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.6e-78 297.0 235 63.8
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.0e-77 294.3 230 63.9
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 4.0e-77 292.4 230 63.5
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.5e-76 290.4 230 63.0
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.2e-70 270.8 237 57.0
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 2.1e-70 270.0 290 49.3
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 2.2e-64 250.0 285 47.7
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 2.5e-63 246.5 271 49.8
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.4e-58 229.9 154 70.1
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.6e-57 227.3 218 59.6
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.9e-56 223.0 139 75.5
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.2e-52 211.1 197 50.8
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.5e-52 210.7 267 49.4
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 2.6e-52 209.9 264 47.3
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.4e-52 209.5 138 74.6
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.4e-52 209.1 197 50.8
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.3e-51 207.6 197 49.7
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.9e-51 206.5 197 49.7
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.2e-50 203.0 219 55.3
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.5e-49 199.5 232 52.6
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.5e-41 172.9 197 45.2
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.7e-40 170.6 162 58.6
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-38 162.5 185 47.6
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 1.7e-32 144.1 76 90.8
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 8.1e-30 135.2 83 81.9
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 6.4e-27 125.6 99 64.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 6.4e-27 125.6 99 64.6
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.4e-27 125.6 220 42.7
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.1e-26 122.9 182 36.8
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.6e-25 119.4 206 41.3
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 1.7e-24 117.5 190 40.0
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 3.9e-24 116.3 114 52.6
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.6e-24 115.2 199 35.2
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 2.5e-23 113.6 217 32.3
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.4e-20 103.2 62 79.0
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.3e-19 101.3 61 77.0
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.9e-19 99.4 60 76.7
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.4e-18 97.8 61 75.4
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.7e-16 90.9 67 68.7
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.2e-14 82.4 46 82.6
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 2.2e-11 73.9 51 64.7
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 4.9e-11 72.8 91 40.7
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 1.1e-07 61.6 90 41.1


User provided reference genes

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