Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 3844.7 1958 100.0
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 3185.2 1958 82.2
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 3152.1 1962 81.7
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 3130.1 1935 81.0
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 3125.5 1965 80.2
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 3111.6 1955 79.9
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 3084.3 1958 79.6
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2973.0 1933 76.9
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2929.8 1979 75.3
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2927.5 2262 68.0
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2519.6 1959 65.4
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2516.1 1960 65.4
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2504.6 1960 64.5
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2479.9 1964 64.0
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2454.5 1945 63.2
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2446.4 1960 62.9
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2424.8 1970 63.0
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2412.5 1984 62.4
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2408.6 1953 62.5
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2406.7 1963 62.0
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2403.2 1974 62.2
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2387.5 1965 61.5
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2369.3 1953 62.0
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2357.4 1943 61.1
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2357.0 1966 61.0
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2353.2 2053 59.2
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2308.1 1945 59.9
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2285.0 1968 60.0
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2278.8 1974 58.8
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2271.9 1976 58.6
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2263.4 1975 58.1
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2235.7 1864 60.4
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2228.4 2168 54.6
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2218.4 2160 54.3
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2214.9 1953 56.9
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2214.5 1977 57.2
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2204.1 1960 56.5
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2202.6 1944 56.7
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2197.2 1958 56.4
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2195.6 1968 58.4
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2191.8 1946 57.1
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2191.4 1981 56.7
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2169.0 1968 57.0
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2167.5 1968 57.4
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 2152.1 1811 59.9
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2150.9 2143 53.4
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2144.4 1975 56.1
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 2135.9 1958 56.1
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2130.5 1959 56.3
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2129.4 1962 56.1
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 2129.0 1958 56.0
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 2126.3 1973 55.8
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2123.6 1835 58.0
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 2121.3 1962 55.8
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2121.3 1935 56.8
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2119.0 1957 55.9
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 2115.1 1969 55.6
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2114.7 1989 55.4
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2110.1 1964 55.2
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2107.8 1962 55.3
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2105.1 1989 55.1
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2097.0 1954 54.5
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 2096.2 1961 55.4
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2087.8 1964 54.9
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2087.0 1951 54.9
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 2065.8 2002 53.6
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 2058.1 1957 55.4
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2057.0 1946 53.6
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2056.6 1938 54.5
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 2052.3 1599 65.1
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2015.4 1967 53.7
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 2004.2 1967 52.6
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1991.1 1938 53.2
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1926.8 1838 54.5
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1918.3 1977 51.1
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1892.9 1941 51.7
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1831.2 2010 49.4
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1593.2 1178 67.0
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1498.0 1286 58.4
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1480.3 1265 59.9
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1418.7 1831 42.7
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1327.4 2041 38.4
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1276.2 1083 60.8
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1270.0 2019 37.8
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1228.0 2034 36.8
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1213.7 1433 45.4
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1167.1 1003 58.3
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1113.2 1151 51.7
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 1.4e-298 1030.8 2136 32.8
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 5.6e-268 929.1 784 60.7
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 2.8e-259 900.2 956 51.3
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.3e-256 891.3 894 53.0
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.5e-255 887.1 1002 47.7
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 3.0e-245 853.6 670 67.5
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 8.5e-240 835.5 783 54.8
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 1.4e-239 834.7 1122 43.4
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 7.4e-236 822.4 974 47.0
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 1.7e-171 608.6 476 65.1
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 2.4e-165 588.2 531 54.6
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 3.4e-164 584.3 527 58.8
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 1.3e-158 565.8 521 57.2
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.8e-144 518.8 455 56.5
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 5.1e-144 517.3 299 85.6
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 2.9e-139 501.5 434 56.9
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 1.8e-133 482.3 398 62.3
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.0e-131 476.5 662 42.7
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 8.8e-112 410.2 856 32.0
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 1.3e-99 369.8 337 57.0
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.0e-91 343.6 395 45.1
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 6.5e-91 340.9 258 62.4
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 8.5e-91 340.5 226 75.2
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 1.2e-84 320.1 335 54.9
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 2.6e-79 302.4 290 60.0
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 5.8e-71 274.6 231 60.2
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.0e-68 266.2 164 79.9
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 3.1e-64 252.3 194 61.9
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 2.6e-63 249.2 194 60.3
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.6e-63 249.2 232 53.9
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 1.1e-61 243.8 374 40.6
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 1.0e-59 237.3 288 50.0
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 6.8e-56 224.6 319 41.1
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 4.4e-47 195.3 522 27.0
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.4e-45 190.3 292 41.1
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.4e-45 190.3 301 34.6
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 8.1e-41 174.5 289 42.2
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 3.5e-36 159.1 191 48.2
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 3.9e-35 155.6 224 44.6
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 3.4e-31 142.5 93 77.4
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 6.4e-30 138.3 148 50.0
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 1.9e-29 136.7 104 64.4
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 5.5e-29 135.2 141 49.6
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 3.0e-27 129.4 94 63.8
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 5.1e-27 128.6 132 50.8
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.5e-26 127.1 84 70.2
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 1.9e-26 126.7 128 51.6
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 3.1e-24 119.4 99 57.6
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 6.9e-24 118.2 156 42.3
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 3.4e-23 115.9 159 44.0
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 2.3e-19 103.2 72 69.4
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 4.8e-17 95.5 105 45.7
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 8.2e-17 94.7 91 53.8
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 8.2e-17 94.7 144 44.4
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 2.0e-15 90.1 55 72.7
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 2.0e-15 90.1 59 69.5
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 4.5e-15 89.0 53 81.1
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 6.5e-14 85.1 203 29.6
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.2e-12 80.9 85 47.1
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.2e-12 80.9 85 47.1
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.7e-12 79.7 85 45.9
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 6.1e-12 78.6 93 45.2
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 6.1e-12 78.6 86 45.3
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 1.3e-11 77.4 118 39.0
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 5.1e-11 75.5 111 39.6
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 7.4e-10 71.6 47 68.1
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 2.8e-09 69.7 75 41.3
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 6.3e-09 68.6 119 37.0
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 8.2e-09 68.2 114 38.6
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 1.8e-08 67.0 112 38.4
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 2.9e-06 59.7 134 29.1


User provided reference genes

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