Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 2.9e-134 481.9 240 100.0
Glyma.02G038900 Glycine max HOM05D002002 ORTHO05D003658 1.4e-64 250.4 258 55.8
Phvul.002G149900 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 4.6e-63 245.4 258 53.9
Glyma.01G025900 Glycine max HOM05D002002 ORTHO05D003658 3.9e-62 242.3 260 53.8
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 2.8e-52 209.5 286 46.9
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 7.1e-48 194.9 284 43.7
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 1.6e-47 193.7 294 41.5
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 7.6e-42 174.9 213 49.8
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 1.3e-41 174.1 212 50.5
TPR.G17746 Trifolium pratense HOM05D002002 ORTHO05D003658 1.7e-41 173.7 245 43.7
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 3.3e-37 159.5 253 40.7
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 5.6e-37 158.7 242 40.5
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 1.6e-36 157.1 251 36.7
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 6.9e-35 151.8 245 41.6
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 3.4e-34 149.4 241 39.4
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 3.4e-34 149.4 242 40.5
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 4.5e-34 149.1 234 39.7
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 5.8e-34 148.7 250 37.2
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 1.0e-33 147.9 230 41.7
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.3e-33 147.5 252 39.3
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.3e-33 147.5 252 39.3
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.7e-33 147.1 252 38.5
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 2.9e-33 146.4 203 39.4
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 4.9e-33 145.6 241 38.6
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 4.9e-33 145.6 245 41.2
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 9.3e-32 141.4 243 39.5
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 2.7e-31 139.8 247 35.6
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 3.5e-31 139.4 242 37.6
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 3.9e-30 136.0 236 39.4
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 1.1e-29 134.4 240 35.0
VMungo1215G2343 Vigna mungo HOM05D000068 ORTHO05D004691 1.1e-29 134.4 181 47.0
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 1.9e-29 133.7 253 35.2
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 1.9e-29 133.7 199 39.2
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 2.5e-29 133.3 253 35.2
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 4.3e-29 132.5 203 38.4
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 1.8e-27 127.1 241 37.3
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 1.8e-27 127.1 240 36.2
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 5.3e-27 125.6 202 36.1
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 5.3e-27 125.6 239 34.7
Medtr5g033070 Medicago truncatula HOM05D002002 ORTHO05D003658 5.3e-27 125.6 242 38.8
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 6.9e-27 125.2 199 36.2
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 1.2e-26 124.4 198 37.9
TPR.G38725 Trifolium pratense HOM05D002002 ORTHO05D003658 1.5e-26 124.0 238 37.4
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 8.5e-25 118.2 222 33.8
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 5.5e-24 115.5 203 36.9
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.2e-23 114.4 201 34.8
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 7.9e-23 111.7 122 50.8
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 7.9e-23 111.7 253 31.2
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.1e-21 107.8 121 48.8
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 1.9e-21 107.1 211 32.7
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 2.5e-21 106.7 226 32.7
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 4.3e-21 105.9 237 30.4
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 1.4e-19 100.9 235 29.4
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 1.4e-19 100.9 202 31.2
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 1.2e-18 97.8 203 32.5
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 4.5e-18 95.9 99 51.5
Ca_04572_v3 Cicer arietinum L. HOM05D002002 ORTHO05D003658 1.4e-16 90.9 72 65.3
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 3.2e-16 89.7 220 29.5
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 7.2e-16 88.6 226 30.1
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 9.4e-16 88.2 241 27.8
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 2.1e-15 87.0 106 42.5
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 4.7e-15 85.9 228 27.6
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 6.1e-15 85.5 203 31.5
Oeu009141.2 Olea europaea HOM05D002002 ORTHO05D003658 7.9e-15 85.1 98 41.8
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 3.9e-14 82.8 211 29.4
Glyma.08G282202 Glycine max HOM05D002002 ORTHO05D003658 8.8e-14 81.6 125 44.8
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 2.0e-13 80.5 104 40.4
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 4.4e-13 79.3 125 33.6
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 8.2e-12 75.1 262 30.2
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 1.4e-11 74.3 155 33.5
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.8e-11 73.9 155 33.5
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 2.4e-11 73.6 206 29.1
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 3.1e-11 73.2 144 29.9
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 4.1e-11 72.8 211 28.0
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 4.1e-11 72.8 202 26.7
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 4.1e-11 72.8 92 37.0
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 5.3e-11 72.4 93 40.9
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 9.1e-11 71.6 72 44.4
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.2e-10 71.2 93 39.8
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 1.2e-10 71.2 87 39.1
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 1.2e-10 71.2 87 39.1
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 2.0e-10 70.5 211 29.4
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.0e-10 70.5 216 25.5
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 2.0e-10 70.5 122 31.1
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.6e-10 70.1 155 31.6
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 2.6e-10 70.1 71 46.5
Zm00001eb210880 Zea mays HOM05D002002 ORTHO05D003658 2.6e-10 70.1 87 37.9
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.4e-10 69.7 155 31.6
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 3.4e-10 69.7 110 38.2
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 4.5e-10 69.3 177 28.2
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 5.9e-10 68.9 160 30.0
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 5.9e-10 68.9 102 34.3
Os03g0844850 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D003658 7.7e-10 68.6 86 39.5
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 1.7e-09 67.4 71 42.3
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 1.7e-09 67.4 113 33.6
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 2.9e-09 66.6 188 31.4
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 2.9e-09 66.6 85 41.2
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 2.9e-09 66.6 121 38.0
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 6.5e-09 65.5 106 34.9
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 6.5e-09 65.5 72 38.9
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 8.5e-09 65.1 86 34.9
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 1.1e-08 64.7 201 28.4
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.4e-08 64.3 198 26.3
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 1.4e-08 64.3 246 28.5
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 3.2e-08 63.2 92 30.4
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 3.2e-08 63.2 109 33.0
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 4.2e-08 62.8 98 31.6
Zm00001eb385060 Zea mays HOM05D007028 ORTHO05D003658 5.5e-08 62.4 101 32.7
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 7.2e-08 62.0 195 26.7
Ciclev10017528m.g Citrus clementina HOM05D002002 ORTHO05D003658 9.4e-08 61.6 95 35.8
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 9.4e-08 61.6 89 34.8
Os06g0568400 Oryza sativa ssp. japonica HOM05D007028 ORTHO05D003658 1.2e-07 61.2 216 26.9
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 1.2e-07 61.2 158 29.1
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 1.6e-07 60.8 71 35.2
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 2.7e-07 60.1 195 26.7
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 2.7e-07 60.1 97 34.0
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 2.7e-07 60.1 152 28.3
Aqoxy7G01883 Aquilegia oxysepala HOM05D007028 ORTHO05D003658 8.0e-07 58.5 229 27.1
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.3e-06 57.0 195 25.1
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 3.9e-06 56.2 86 31.4
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 5.2e-06 55.8 73 34.2
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 5.2e-06 55.8 121 28.9
Lsat_1_v5_gn_2_16281 Lactuca sativa HOM05D007028 ORTHO05D003658 5.2e-06 55.8 69 37.7
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 8.8e-06 55.1 84 32.1


User provided reference genes

Program Settings