Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 2.4e-231 805.1 377 100.0
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 8.2e-192 673.7 376 83.0
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 2.9e-189 665.2 381 79.8
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 2.7e-187 658.7 377 80.6
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 9.7e-185 650.2 377 79.3
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 1.2e-182 643.3 377 78.2
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 5.0e-181 637.9 377 79.3
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 5.7e-169 597.8 394 72.8
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 1.3e-152 543.5 376 65.2
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 3.2e-151 538.9 378 64.8
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 2.7e-150 535.8 378 65.3
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 4.6e-150 535.0 377 63.7
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 1.5e-148 530.0 376 62.8
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 2.5e-148 529.3 380 63.4
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 4.3e-148 528.5 378 64.6
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 5.6e-148 528.1 379 63.3
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 3.1e-146 522.3 351 71.2
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 4.0e-146 521.9 376 62.2
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 5.2e-146 521.5 378 63.2
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 2.0e-145 519.6 380 62.9
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 2.0e-145 519.6 377 62.1
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 3.4e-145 518.8 385 62.1
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 5.8e-145 518.1 384 60.4
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 9.8e-145 517.3 376 62.2
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 1.3e-144 516.9 400 60.5
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 2.9e-144 515.8 377 62.6
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 4.9e-144 515.0 378 62.4
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 6.4e-144 514.6 380 62.9
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.9e-143 513.1 378 61.4
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 3.2e-143 512.3 377 62.9
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 7.0e-143 511.1 384 60.4
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 2.3e-141 506.1 380 60.8
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 3.9e-141 505.4 380 61.3
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 3.9e-141 505.4 386 62.7
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 5.0e-141 505.0 381 60.1
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 3.3e-140 502.3 381 59.8
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 8.1e-139 497.7 378 60.6
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 1.8e-138 496.5 377 59.9
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 8.9e-138 494.2 381 60.1
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 1.5e-137 493.4 406 57.6
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 5.8e-137 491.5 376 60.4
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 5.8e-137 491.5 405 56.0
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 3.7e-136 488.8 378 60.1
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 6.4e-136 488.0 381 59.3
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 6.4e-136 488.0 381 59.3
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 6.4e-136 488.0 360 61.9
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 1.9e-135 486.5 377 58.9
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 2.4e-135 486.1 380 60.0
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 4.1e-135 485.3 383 64.0
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 5.4e-135 485.0 378 60.1
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 2.1e-134 483.0 377 67.1
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 2.1e-134 483.0 287 76.3
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 3.5e-134 482.3 347 64.3
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 6.0e-134 481.5 377 58.4
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 1.0e-133 480.7 377 61.0
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 1.3e-133 480.3 377 58.1
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 1.7e-133 479.9 377 57.8
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 3.0e-133 479.2 377 59.9
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 6.6e-133 478.0 378 58.2
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 8.6e-133 477.6 400 58.0
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 1.1e-132 477.2 377 58.1
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 1.6e-131 473.4 379 58.8
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 3.1e-130 469.2 377 58.6
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 6.8e-130 468.0 369 59.1
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 2.6e-129 466.1 384 57.6
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 3.4e-129 465.7 377 59.4
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 5.8e-129 464.9 377 58.1
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 5.8e-129 464.9 377 56.8
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 1.4e-127 460.3 382 58.1
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 2.4e-127 459.5 344 61.3
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 5.4e-127 458.4 377 57.0
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 1.2e-126 457.2 377 56.0
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 1.2e-126 457.2 359 58.5
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 3.9e-125 452.2 380 56.6
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.5e-124 450.3 468 48.5
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 1.9e-124 449.9 349 61.9
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 8.1e-123 444.5 420 51.2
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 8.1e-123 444.5 377 55.4
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 2.4e-122 443.0 349 57.0
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 8.9e-122 441.0 377 54.9
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 3.8e-120 435.6 378 54.5
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 3.8e-120 435.6 265 77.0
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 7.1e-119 431.4 388 53.9
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 7.8e-118 427.9 303 65.0
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 9.3e-111 404.4 321 60.7
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 8.7e-109 397.9 329 56.8
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 5.8e-105 385.2 308 56.2
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 2.9e-104 382.9 379 49.3
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.8e-101 373.6 392 48.0
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 8.7e-101 371.3 274 63.5
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 1.2e-94 350.9 303 56.1
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.0e-93 347.8 248 61.3
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 4.3e-92 342.4 389 45.8
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 7.4e-92 341.7 377 43.8
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 2.5e-87 326.6 397 42.1
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 7.9e-86 321.6 379 42.5
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 5.1e-77 292.4 378 40.5
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.4e-74 284.3 357 42.6
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.4e-69 267.7 307 45.6
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 8.8e-69 265.0 216 55.6
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 1.1e-50 204.9 296 36.1
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 3.1e-42 176.8 122 64.8
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 9.2e-42 175.3 372 31.7
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.6e-41 174.5 152 53.9
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 2.7e-41 173.7 374 32.6
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 3.5e-41 173.3 390 32.1
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.0e-40 171.8 372 33.1
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 2.3e-40 170.6 368 32.3
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 2.9e-40 170.2 372 32.0
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 3.8e-40 169.9 377 31.8
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 3.8e-40 169.9 374 31.8
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 5.0e-40 169.5 372 32.5
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 8.6e-40 168.7 375 31.7
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 8.6e-40 168.7 372 32.5
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 8.6e-40 168.7 372 32.3
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 1.1e-39 168.3 372 32.5
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 3.3e-39 166.8 378 31.5
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 3.3e-39 166.8 372 32.0
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 3.3e-39 166.8 372 32.3
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 3.3e-39 166.8 372 32.3
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 4.3e-39 166.4 371 32.6
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 5.6e-39 166.0 376 33.2
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 9.5e-39 165.2 372 32.3
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 1.2e-38 164.9 379 29.8
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.2e-38 164.9 372 31.7
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 1.2e-38 164.9 372 31.7
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 1.6e-38 164.5 372 32.3
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 2.8e-38 163.7 390 31.5
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 8.0e-38 162.2 375 31.5
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 8.0e-38 162.2 376 31.1
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.0e-37 161.8 372 31.5
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 1.4e-37 161.4 371 32.6
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.3e-37 160.6 371 32.1
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 3.0e-37 160.2 373 32.2
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 3.0e-37 160.2 373 31.9
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 4.0e-37 159.8 386 30.6
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 6.8e-37 159.1 372 32.0
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 8.9e-37 158.7 366 31.1
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.2e-36 158.3 372 31.2
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 1.2e-36 158.3 353 32.3
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 1.2e-36 158.3 372 30.9
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 1.5e-36 157.9 374 30.5
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 2.0e-36 157.5 377 29.4
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 2.6e-36 157.1 373 31.9
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 3.4e-36 156.8 371 29.1
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 3.4e-36 156.8 375 31.2
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 2.9e-35 153.7 371 29.9
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 4.9e-35 152.9 378 27.8
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 8.3e-35 152.1 382 30.1
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 1.1e-34 151.8 396 30.1
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 1.4e-34 151.4 376 28.7
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 1.4e-34 151.4 376 28.7
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 1.8e-34 151.0 371 31.0
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 2.4e-34 150.6 374 29.9
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 2.4e-34 150.6 394 29.7
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 3.2e-34 150.2 374 28.9
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 7.0e-34 149.1 374 29.1
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 7.0e-34 149.1 373 29.2
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 3.0e-32 143.7 179 46.4
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 7.3e-31 139.0 376 28.2
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 9.5e-31 138.7 377 27.9
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.2e-28 131.7 192 39.1
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.3e-27 128.3 129 45.0
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.9e-27 127.1 375 28.3
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 3.7e-27 126.7 373 26.3
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 3.2e-26 123.6 73 75.3
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 6.0e-25 119.4 86 66.3
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 3.0e-24 117.1 244 31.6
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.5e-23 114.8 132 42.4
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 7.3e-23 112.5 299 30.1
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.1e-21 108.6 126 42.9
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 8.9e-21 105.5 461 24.3
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 9.8e-20 102.1 74 60.8
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 4.1e-18 96.7 72 63.9
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 3.0e-16 90.5 200 32.5
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 7.3e-15 85.9 82 46.3
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 3.6e-14 83.6 77 51.9
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 3.1e-13 80.5 62 53.2
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 6.8e-13 79.3 120 37.5
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 2.0e-12 77.8 56 60.7
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 4.9e-11 73.2 190 26.8
Oeu048569.1 Olea europaea HOM05D000240 ORTHO05D002608 1.9e-07 61.2 38 73.7
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 2.8e-06 57.4 46 58.7


User provided reference genes

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