Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 3.2e-177 625.5 475 100.0
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 4.3e-145 518.8 480 61.0
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 6.1e-144 515.0 489 60.1
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 2.3e-138 496.5 476 59.0
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 8.6e-138 494.6 475 58.7
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 2.0e-134 483.4 488 57.6
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 2.3e-130 469.9 483 71.6
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 3.3e-129 466.1 482 68.0
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 5.6e-129 465.3 475 56.0
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 9.9e-126 454.5 446 58.5
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 5.1e-122 442.2 491 65.4
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 1.4e-119 434.1 486 53.9
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 2.1e-107 393.7 483 61.1
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 6.0e-107 392.1 476 48.7
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 2.5e-105 386.7 556 56.3
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 1.3e-101 374.4 473 70.6
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.3e-101 374.4 476 48.5
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 4.9e-101 372.5 453 71.3
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 2.1e-99 367.1 485 67.0
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 6.0e-99 365.5 470 48.1
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 1.0e-98 364.8 473 46.1
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 1.3e-98 364.4 484 69.8
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.3e-98 364.4 477 47.0
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 1.8e-98 364.0 476 45.8
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 2.3e-98 363.6 446 48.4
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 2.3e-98 363.6 484 63.4
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 3.9e-98 362.8 474 46.4
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 5.1e-98 362.5 475 46.3
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 9.6e-97 358.2 481 46.4
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 4.8e-96 355.9 487 70.6
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 4.0e-95 352.8 517 64.4
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 1.5e-94 350.9 468 46.6
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 7.6e-94 348.6 459 47.1
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 1.3e-93 347.8 491 69.2
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 2.9e-93 346.7 523 67.5
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.9e-93 346.7 482 67.6
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.9e-93 346.7 491 69.2
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 4.9e-93 345.9 474 68.6
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.1e-92 344.7 500 68.0
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 1.4e-92 344.4 483 44.9
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.9e-92 344.0 474 68.4
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 1.9e-92 344.0 500 68.2
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.7e-91 340.1 491 67.4
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 7.9e-91 338.6 458 46.5
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 7.9e-91 338.6 480 64.2
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 7.9e-91 338.6 503 57.7
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.0e-90 338.2 474 65.8
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 1.3e-90 337.8 475 45.3
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 1.8e-90 337.4 476 67.2
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 3.9e-90 336.3 457 65.4
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.9e-89 334.0 478 68.8
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 2.5e-89 333.6 504 60.7
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 3.3e-89 333.2 512 63.1
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 5.6e-89 332.4 484 51.0
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 2.1e-88 330.5 484 46.9
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 6.2e-88 328.9 471 44.8
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 8.2e-88 328.6 485 43.9
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 1.1e-87 328.2 473 43.3
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 1.4e-87 327.8 522 42.0
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 1.4e-87 327.8 478 43.1
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 3.4e-86 323.2 440 59.5
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 3.4e-86 323.2 481 71.1
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 5.8e-86 322.4 446 66.4
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 7.6e-86 322.0 472 52.3
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 6.5e-85 318.9 454 44.9
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.4e-84 317.8 453 47.5
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 3.5e-83 313.2 458 43.2
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 1.3e-82 311.2 441 52.4
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 3.9e-82 309.7 497 64.6
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 1.1e-79 301.6 449 43.9
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 5.3e-79 299.3 476 42.2
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 5.3e-79 299.3 474 51.9
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 9.0e-79 298.5 524 55.3
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 3.4e-78 296.6 431 43.9
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 3.4e-78 296.6 487 49.1
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 4.5e-78 296.2 489 40.5
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 2.2e-77 293.9 481 40.7
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 9.3e-76 288.5 480 53.3
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 1.2e-75 288.1 407 44.2
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 1.3e-74 284.6 479 50.1
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 1.5e-73 281.2 481 48.6
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 5.7e-73 279.3 431 43.6
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 1.8e-71 274.2 475 46.9
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 5.3e-71 272.7 475 50.7
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 5.3e-71 272.7 488 39.1
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 9.1e-71 271.9 478 54.0
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 1.5e-70 271.2 480 42.9
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 1.5e-70 271.2 480 42.9
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 1.5e-70 271.2 487 41.9
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 2.6e-70 270.4 478 38.9
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 4.5e-70 269.6 408 42.9
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 2.2e-69 267.3 475 57.9
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 3.8e-69 266.5 495 45.3
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 6.5e-69 265.8 482 55.8
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 6.5e-69 265.8 495 48.9
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 7.2e-68 262.3 476 57.1
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 1.6e-67 261.2 408 41.2
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 2.1e-67 260.8 475 49.5
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 2.7e-67 260.4 486 38.5
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 2.3e-66 257.3 476 58.2
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 5.1e-66 256.1 512 51.4
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 5.1e-66 256.1 512 51.4
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.5e-65 254.6 451 39.5
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 2.6e-65 253.8 476 51.7
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 9.7e-65 251.9 475 42.7
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 6.3e-64 249.2 167 74.9
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 6.3e-64 249.2 580 52.6
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 3.1e-63 246.9 476 46.2
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 4.1e-63 246.5 583 54.0
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 5.3e-63 246.1 433 38.1
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 5.3e-63 246.1 483 44.1
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 1.2e-62 245.0 507 49.1
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 1.6e-59 234.6 451 37.5
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 1.8e-58 231.1 474 35.7
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.6e-54 218.0 142 75.4
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 6.5e-53 212.6 412 41.7
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 3.6e-51 206.8 149 71.8
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 1.2e-49 201.8 463 40.4
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.4e-47 194.9 138 71.7
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 3.2e-44 183.7 416 38.7
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 1.5e-41 174.9 491 33.2
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 1.3e-40 171.8 155 61.3
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 4.5e-38 163.3 436 33.5
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 5.9e-38 162.9 175 55.4
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 4.7e-35 153.3 477 35.8
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 5.7e-33 146.4 113 65.5
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 6.8e-26 122.9 127 55.1
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 2.6e-25 120.9 74 75.7
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 1.4e-23 115.2 76 72.4
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 5.0e-21 106.7 365 30.4
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 3.1e-18 97.4 109 51.4
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 1.3e-13 82.0 155 34.8
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 1.7e-13 81.6 62 53.2


User provided reference genes

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