Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 2344.3 1244 100.0
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1767.7 1249 75.4
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1764.6 1246 74.1
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1738.4 1259 72.2
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1687.5 1245 71.2
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1654.8 1245 69.9
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1651.7 1245 70.1
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1649.8 1256 69.7
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1642.1 1255 68.8
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1588.9 1239 68.3
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1559.7 1284 66.0
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1401.7 1269 59.9
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1389.8 1265 61.2
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1372.1 1266 58.5
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1317.0 1259 58.2
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1309.7 1251 56.4
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1301.6 1251 56.9
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1300.8 1252 56.7
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1297.7 1264 56.9
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1288.1 1259 55.2
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1284.2 1261 55.7
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1279.6 1267 54.9
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1275.0 1261 55.6
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1265.8 1261 55.1
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1259.2 1250 54.5
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1254.2 1250 54.5
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1253.4 1260 54.2
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1248.0 1251 57.0
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1247.3 1250 54.4
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1243.8 1262 54.2
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1241.1 1274 53.6
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1236.9 1249 54.4
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1229.5 1268 55.5
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1227.6 1277 53.1
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1225.7 1272 53.3
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1214.9 1255 54.5
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1211.4 1262 52.1
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1210.7 1268 52.4
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1197.2 1181 55.9
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1185.2 1250 52.6
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1171.0 1261 50.8
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1170.2 1253 51.2
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1152.5 1268 51.5
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1146.0 1256 53.1
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1145.2 1267 50.9
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1142.5 1262 49.9
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1135.6 1252 51.2
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1129.0 1281 50.1
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1123.2 1249 50.2
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1122.8 1107 55.6
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1116.7 1245 52.4
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1113.6 1254 50.4
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1112.4 1240 51.1
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1111.7 1254 49.8
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1109.0 1242 49.5
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1106.3 1261 49.3
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1103.6 1266 50.6
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1101.7 1259 48.8
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1097.8 1263 49.6
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1096.3 1260 48.6
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1094.3 1260 48.7
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1088.9 1189 52.6
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1084.7 1252 49.4
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1076.6 1258 51.7
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1075.5 1238 50.1
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1075.1 1176 52.9
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 8.5e-312 1073.5 1263 52.3
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 7.7e-311 1070.8 1262 47.8
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 1.3e-310 1070.1 1254 49.0
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 2.2e-310 1069.3 1261 51.7
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 1.4e-309 1066.6 1269 49.6
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 4.2e-309 1065.1 1267 48.3
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 9.3e-309 1063.9 1239 48.9
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 4.6e-308 1061.6 1236 48.9
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 4.6e-308 1061.6 1101 53.2
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 1.0e-307 1060.4 1270 49.3
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 4.0e-304 1048.5 1273 46.8
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 6.5e-302 1041.2 1263 49.2
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 6.5e-302 1041.2 938 61.4
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 4.2e-301 1038.5 1261 50.3
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 4.6e-300 1035.0 1018 55.5
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 8.7e-299 1030.8 1261 47.0
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 1.5e-298 1030.0 1245 47.7
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 1.6e-297 1026.5 1309 45.8
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 3.0e-291 1005.7 927 59.5
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 3.3e-290 1002.3 1258 46.2
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 5.5e-285 984.9 1273 46.5
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.0e-283 980.7 1252 46.4
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 7.9e-276 954.5 876 59.1
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 7.9e-276 954.5 1142 48.3
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 1.1e-272 944.1 1054 49.6
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 1.2e-242 844.3 853 58.1
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 5.7e-242 842.0 982 47.9
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 2.0e-218 763.8 1011 46.7
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 4.4e-218 762.7 1252 39.3
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 7.3e-213 745.3 961 45.7
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 3.9e-206 723.0 910 45.5
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 5.1e-206 722.6 1292 36.2
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 4.0e-203 713.0 1135 38.0
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 5.1e-174 616.3 877 41.4
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 7.4e-173 612.5 735 45.4
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 8.5e-169 599.0 1058 36.3
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 6.7e-166 589.3 808 41.5
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 3.9e-158 563.5 752 43.5
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 3.3e-157 560.5 569 53.1
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.3e-140 505.4 641 44.6
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 7.0e-139 499.6 396 66.2
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 5.5e-136 490.0 427 64.9
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.5e-120 438.7 631 42.6
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 2.3e-110 404.8 458 49.6
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 2.2e-108 398.3 237 83.5
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 7.8e-98 363.2 360 55.6
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 8.1e-95 353.2 345 58.6
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 6.9e-94 350.1 338 60.1
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 1.7e-92 345.5 334 59.6
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 6.0e-82 310.5 451 37.7
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 4.8e-79 300.8 383 44.9
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.4e-75 288.5 664 32.1
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 8.7e-65 253.4 469 33.5
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 1.1e-64 253.1 167 74.9
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 6.5e-60 237.3 340 36.2
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 6.5e-52 210.7 374 39.0
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.1e-46 193.4 293 37.2
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 3.3e-40 171.8 289 36.7
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 4.4e-32 144.8 120 60.8
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 2.2e-31 142.5 155 52.9
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 8.2e-31 140.6 120 60.0
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 4.5e-29 134.8 124 58.1
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 2.3e-25 122.5 314 33.8
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 2.3e-20 105.9 204 36.3
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 2.3e-17 95.9 129 40.3
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 2.2e-15 89.4 410 25.1
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 1.5e-11 76.6 61 63.9


User provided reference genes

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