Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 4420.2 2216 100.0
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 3446.4 2231 79.2
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 3426.3 2228 78.5
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 3408.2 2231 78.8
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 3365.9 2229 78.1
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 3361.2 2226 77.7
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 3340.4 2229 77.2
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 3315.4 2225 76.9
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 3311.2 2234 76.5
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 3306.9 2225 76.7
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 3305.4 2233 76.4
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2760.3 2244 64.2
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2742.6 2238 64.2
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2738.4 2240 64.2
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2718.0 2238 63.9
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2699.5 2242 63.9
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2658.6 2241 62.9
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2652.1 2246 62.1
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2640.9 2239 61.8
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2635.5 2240 61.9
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2630.1 2245 62.0
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2622.8 2243 61.8
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2622.0 2244 61.8
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2597.8 2253 61.7
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2595.5 2239 61.4
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2595.1 2240 61.4
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2592.8 2242 61.4
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2578.5 2240 61.0
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2575.4 2245 61.1
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2563.9 2244 60.9
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2562.7 2256 60.8
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2562.3 2246 60.9
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2556.2 2238 61.0
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2542.3 2237 60.5
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2540.8 2246 60.2
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2535.0 2245 60.3
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2479.9 2241 59.2
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2475.7 2239 58.8
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2475.3 2236 58.8
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2468.7 2235 59.0
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2458.3 2244 59.0
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2456.0 2254 58.9
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2451.8 2216 59.3
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2432.9 2235 57.6
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2425.2 2241 58.0
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2417.9 2239 58.2
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2407.5 2245 57.7
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2406.7 2237 57.4
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2405.2 2251 57.4
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2398.2 2248 58.1
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2396.3 2237 57.1
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2392.8 2242 57.3
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2388.6 2236 57.6
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2376.7 2243 57.2
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2375.5 2239 56.9
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2363.6 2265 56.6
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2358.6 2233 57.5
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2352.4 2229 57.5
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2351.6 2245 57.1
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2343.5 2235 56.0
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2342.0 2230 57.4
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2336.6 2240 56.7
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2323.5 2270 56.0
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2313.9 2265 55.5
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2303.1 2238 55.9
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2303.1 2241 56.0
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2299.6 2237 55.5
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2290.4 2240 55.8
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2290.4 2240 55.8
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2289.2 2238 55.8
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2288.5 2236 55.7
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2283.8 2235 55.7
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2282.7 2238 55.3
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2279.6 2245 55.6
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2279.6 2245 55.6
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2278.8 2240 55.0
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2261.1 1830 64.4
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2230.7 1826 63.5
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2225.3 1899 61.6
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2206.0 2253 54.9
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2205.6 1829 63.2
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2172.9 2240 54.1
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2131.3 2326 51.9
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2120.9 2070 56.0
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2056.2 1715 63.2
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2026.9 2330 50.1
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 1965.3 2265 50.3
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 1941.8 2258 49.6
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1801.6 2222 48.2
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1757.3 1434 65.3
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1717.2 2396 43.4
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1612.0 1128 74.8
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1521.1 1717 50.1
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1440.6 1389 56.4
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1427.5 2373 39.3
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1394.4 2373 38.6
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1325.5 2215 39.5
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1299.3 2270 38.0
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1230.3 1201 55.6
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1204.9 1031 61.8
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1143.6 952 63.3
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1077.4 1064 56.0
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 6.3e-300 1035.4 1420 43.9
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 3.5e-258 896.7 792 60.5
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 6.6e-257 892.5 1022 50.4
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 4.4e-253 879.8 2455 29.9
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 8.1e-231 805.8 869 50.3
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 3.8e-204 717.2 726 53.6
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 4.6e-202 710.3 1365 36.2
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 6.1e-170 603.6 1009 39.2
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 6.0e-149 533.9 2607 25.4
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 1.6e-122 446.0 446 50.7
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 1.1e-99 370.2 386 53.9
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 9.7e-75 287.3 339 48.1
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 7.0e-73 281.2 288 54.9
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.4e-65 256.9 323 45.2
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 2.0e-64 253.1 138 92.8
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 3.2e-62 245.7 764 28.4
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 5.2e-60 238.4 331 42.6
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 1.7e-58 233.4 235 52.8
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 3.6e-53 215.7 230 50.0
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 8.8e-52 211.1 182 64.8
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 8.9e-44 184.5 287 39.0
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 1.1e-41 177.6 114 79.8
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.3e-36 159.8 501 29.3
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 1.5e-35 157.1 98 79.6
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 5.8e-35 155.2 225 42.7
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 3.9e-31 142.5 110 69.1
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 8.6e-31 141.4 252 36.1
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 1.8e-28 133.7 113 61.9
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 6.0e-24 118.6 155 43.9
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.3e-15 90.1 102 46.1
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 1.5e-11 77.4 422 23.5


User provided reference genes

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