Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 1.1e-84 316.6 160 100.0
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 1.1e-76 290.0 158 91.1
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 1.8e-76 289.3 158 89.9
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 3.1e-76 288.5 160 89.4
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 1.0e-74 283.5 158 88.6
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 2.3e-74 282.3 158 88.0
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.3e-74 282.3 158 88.0
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 2.5e-73 278.9 158 84.8
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 3.3e-73 278.5 158 85.4
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 4.3e-73 278.1 158 85.4
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 4.3e-73 278.1 158 84.8
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 1.6e-72 276.2 158 84.8
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 2.1e-72 275.8 158 84.2
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 2.1e-72 275.8 158 83.5
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 2.8e-72 275.4 158 86.1
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 2.8e-72 275.4 158 84.2
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 2.8e-72 275.4 158 84.2
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 6.1e-72 274.2 158 82.9
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 6.1e-72 274.2 158 84.8
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 6.1e-72 274.2 158 84.8
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 8.0e-72 273.9 158 84.2
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 8.0e-72 273.9 158 83.5
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 8.0e-72 273.9 158 85.4
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 1.0e-71 273.5 158 82.3
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 1.4e-71 273.1 158 82.9
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.8e-71 272.7 158 82.9
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 1.8e-71 272.7 158 81.6
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 1.8e-71 272.7 158 84.8
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.3e-71 272.3 158 82.9
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 3.1e-71 271.9 158 81.0
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 4.0e-71 271.6 158 84.2
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 5.2e-71 271.2 158 82.3
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.2e-71 271.2 158 83.5
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 8.9e-71 270.4 158 83.5
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 8.9e-71 270.4 158 83.5
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 8.9e-71 270.4 158 82.9
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 8.9e-71 270.4 156 83.3
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 8.9e-71 270.4 158 82.3
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 8.9e-71 270.4 145 91.7
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 1.2e-70 270.0 158 83.5
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.2e-70 270.0 158 82.9
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 1.2e-70 270.0 158 81.0
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.2e-70 270.0 158 82.9
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 1.5e-70 269.6 158 82.3
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 1.5e-70 269.6 158 83.5
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.5e-70 269.6 158 81.6
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 2.0e-70 269.2 158 82.9
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 2.6e-70 268.9 158 82.3
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 2.6e-70 268.9 156 82.7
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 4.4e-70 268.1 160 81.9
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 5.8e-70 267.7 158 82.3
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 5.8e-70 267.7 154 83.1
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 7.5e-70 267.3 158 81.6
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 9.8e-70 266.9 158 81.6
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 9.8e-70 266.9 158 81.6
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 1.7e-69 266.2 158 81.6
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 2.2e-69 265.8 158 81.0
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 2.2e-69 265.8 158 81.0
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 2.9e-69 265.4 146 90.4
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 4.9e-69 264.6 158 81.0
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 6.4e-69 264.2 158 79.7
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 8.3e-69 263.8 158 81.0
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 1.1e-68 263.5 158 81.0
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.4e-68 263.1 158 81.0
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 1.9e-68 262.7 150 85.3
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.9e-68 262.7 156 82.7
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 2.4e-68 262.3 159 79.9
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 2.4e-68 262.3 181 73.5
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.2e-68 261.9 150 85.3
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 4.1e-68 261.5 150 84.0
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 5.4e-68 261.2 158 79.7
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 5.4e-68 261.2 150 84.0
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 5.4e-68 261.2 157 79.0
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 7.0e-68 260.8 172 77.9
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.2e-67 260.0 156 80.8
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 1.6e-67 259.6 145 86.2
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 2.0e-67 259.2 158 79.1
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.0e-67 259.2 145 85.5
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 2.0e-67 259.2 158 79.7
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 2.7e-67 258.8 159 79.2
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 2.7e-67 258.8 158 79.7
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.7e-67 258.8 158 79.7
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 2.7e-67 258.8 150 82.7
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 3.5e-67 258.5 158 78.5
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 7.8e-67 257.3 156 79.5
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 7.8e-67 257.3 156 79.5
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.0e-66 256.9 158 78.5
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.3e-66 256.5 158 77.8
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 2.3e-66 255.8 151 81.5
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.3e-66 255.8 158 78.5
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 3.0e-66 255.4 150 80.0
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 3.9e-66 255.0 158 77.8
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 2.5e-65 252.3 158 77.8
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 7.3e-65 250.8 158 77.8
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 7.3e-65 250.8 158 77.2
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 9.5e-65 250.4 158 77.2
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.6e-64 249.6 140 86.4
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 3.6e-64 248.4 150 79.3
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 3.6e-64 248.4 150 79.3
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 6.2e-64 247.7 158 75.9
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 8.0e-64 247.3 144 81.9
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 1.1e-63 246.9 137 86.9
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.4e-63 246.5 142 83.1
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.4e-63 246.5 148 80.4
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 1.2e-62 243.4 150 78.7
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 2.6e-62 242.3 158 72.2
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 3.4e-62 241.9 158 72.2
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 9.8e-62 240.4 158 74.1
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 4.9e-61 238.0 150 74.7
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.9e-60 236.1 137 84.7
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 4.1e-60 235.0 159 73.0
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 4.1e-60 235.0 156 71.2
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 7.0e-60 234.2 158 72.8
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.3e-58 229.9 154 72.1
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 9.5e-57 223.8 155 74.8
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 4.7e-56 221.5 135 83.7
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.4e-52 209.1 158 68.4
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.5e-51 205.3 155 67.7
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 1.1e-49 200.3 149 61.1
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 6.2e-48 194.5 110 85.5
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.4e-47 193.4 109 86.2
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 1.4e-47 193.4 114 85.1
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.2e-46 190.3 117 82.1
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 2.6e-46 189.1 143 65.7
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 2.6e-46 189.1 117 75.2
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 4.9e-45 184.9 159 52.8
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 6.4e-45 184.5 140 66.4
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 9.6e-41 170.6 100 85.0
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 1.6e-40 169.9 149 57.0
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 4.4e-38 161.8 107 74.8
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.3e-37 160.2 111 71.2
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.1e-33 147.1 77 87.0
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.8e-32 141.7 119 62.2
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.4e-31 139.4 119 59.7
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 2.0e-30 136.3 93 73.1
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 2.6e-30 136.0 108 64.8
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.9e-29 131.7 77 76.6
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.4e-28 129.4 77 79.2
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.2e-28 129.0 68 85.3
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.3e-26 123.6 136 50.0
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 2.1e-24 116.3 120 58.3
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 3.1e-23 112.5 169 45.6
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 3.4e-22 109.0 64 82.8
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 1.1e-20 104.0 63 82.5
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.7e-19 99.4 77 64.9
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 1.0e-18 97.4 52 86.5
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 1.5e-17 93.6 58 75.9
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 2.5e-17 92.8 66 68.2
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 1.5e-14 83.6 58 70.7
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 1.5e-06 57.0 32 78.1


User provided reference genes

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