Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 3.2e-156 555.4 373 100.0
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 1.1e-92 344.4 389 71.5
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 2.1e-91 340.1 398 71.4
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 2.6e-89 333.2 376 77.1
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 2.6e-81 306.6 397 68.3
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 6.4e-80 302.0 384 66.4
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 1.4e-79 300.8 394 67.5
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 1.9e-76 290.4 400 66.8
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 4.3e-76 289.3 397 67.5
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 3.2e-71 273.1 391 64.2
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 4.2e-71 272.7 383 65.3
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 6.0e-70 268.9 391 63.7
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 8.1e-67 258.5 427 61.6
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 1.3e-64 251.1 448 58.0
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 1.5e-44 184.5 318 62.9
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 4.2e-39 166.4 305 63.6
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 7.2e-39 165.6 331 58.0
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 2.7e-38 163.7 295 62.4
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 2.7e-38 163.7 371 55.8
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 4.7e-38 162.9 329 58.1
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 6.1e-38 162.5 308 62.0
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 7.9e-38 162.2 306 61.1
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 7.9e-38 162.2 357 56.0
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 1.8e-37 161.0 371 55.8
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 1.8e-37 161.0 314 60.2
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 3.0e-37 160.2 313 59.7
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 5.1e-37 159.5 301 63.8
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 6.7e-37 159.1 305 53.4
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 8.8e-37 158.7 301 63.5
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 2.0e-36 157.5 306 60.8
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 2.0e-36 157.5 318 61.3
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 9.7e-36 155.2 345 56.2
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 9.7e-36 155.2 314 58.9
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 1.7e-35 154.5 374 44.9
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.7e-35 154.5 297 61.3
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 3.7e-35 153.3 298 60.4
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 3.7e-35 153.3 304 61.5
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.4e-34 151.4 230 74.3
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 1.4e-34 151.4 291 59.8
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 1.8e-34 151.0 300 60.7
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 5.3e-34 149.4 294 59.9
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 5.3e-34 149.4 299 56.5
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 5.3e-34 149.4 298 60.4
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 9.1e-34 148.7 300 60.7
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 9.1e-34 148.7 234 72.2
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 1.2e-33 148.3 301 61.1
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.2e-33 148.3 387 49.9
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 2.0e-33 147.5 304 62.5
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 2.0e-33 147.5 311 55.9
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 5.9e-33 146.0 230 73.0
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 5.9e-33 146.0 231 67.1
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 7.7e-33 145.6 305 61.0
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 1.0e-32 145.2 302 57.0
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 1.0e-32 145.2 234 69.2
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 1.0e-32 145.2 313 57.2
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.3e-32 144.8 229 73.8
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 1.3e-32 144.8 332 55.7
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 5.0e-32 142.9 244 69.7
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 1.1e-31 141.7 299 57.5
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 1.1e-31 141.7 231 71.0
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 1.9e-31 141.0 303 56.4
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 2.5e-31 140.6 242 69.0
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 3.2e-31 140.2 218 74.3
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 4.2e-31 139.8 373 54.2
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 5.5e-31 139.4 297 59.6
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 9.4e-31 138.7 228 72.4
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 9.4e-31 138.7 229 72.9
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 9.4e-31 138.7 328 56.7
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 1.2e-30 138.3 316 44.3
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 1.6e-30 137.9 232 71.1
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 2.7e-30 137.1 300 59.3
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 2.7e-30 137.1 304 58.6
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 2.7e-30 137.1 302 60.6
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 3.6e-30 136.7 305 55.7
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 3.6e-30 136.7 228 71.9
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 3.6e-30 136.7 307 58.0
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 3.6e-30 136.7 192 78.1
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 4.7e-30 136.3 302 60.3
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 4.7e-30 136.3 301 59.8
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 4.7e-30 136.3 300 60.0
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 6.1e-30 136.0 365 53.4
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 8.0e-30 135.6 255 63.1
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 1.4e-29 134.8 226 72.6
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 1.8e-29 134.4 292 59.9
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 5.2e-29 132.9 189 78.3
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 5.2e-29 132.9 229 71.6
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 1.1e-28 131.7 277 62.5
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 2.0e-28 131.0 306 54.2
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 2.6e-28 130.6 190 75.3
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 1.3e-27 128.3 309 44.3
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 3.7e-27 126.7 313 55.3
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 4.8e-27 126.3 370 50.0
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 4.8e-27 126.3 187 79.1
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 8.2e-27 125.6 238 67.6
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 4.5e-25 119.8 226 68.1
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 2.9e-24 117.1 154 49.4
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 3.8e-24 116.7 179 45.8
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 9.4e-23 112.1 102 60.8
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 3.6e-22 110.2 170 46.5
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 3.6e-22 110.2 264 61.0
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 1.4e-21 108.2 58 87.9
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 2.3e-21 107.5 57 89.5
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 2.3e-21 107.5 351 50.4
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 8.8e-21 105.5 237 62.4
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 1.2e-20 105.1 302 31.8
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 4.4e-20 103.2 323 51.7
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 5.7e-20 102.8 312 42.3
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 5.7e-20 102.8 137 48.2
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 7.5e-20 102.4 155 41.9
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 1.4e-18 98.2 305 53.1
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 2.4e-18 97.4 205 68.8
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 2.0e-17 94.4 300 53.3
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 1.3e-16 91.7 300 53.3
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 5.0e-16 89.7 172 52.9
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 1.2e-12 78.6 64 54.7
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 2.0e-12 77.8 63 55.6
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 4.4e-12 76.6 38 94.7
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 7.5e-12 75.9 64 51.6
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 3.1e-10 70.5 65 50.8
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 3.1e-10 70.5 65 50.8
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.1e-10 70.1 63 52.4
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 5.4e-10 69.7 63 54.0
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 9.1e-10 68.9 64 46.9
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 3.5e-09 67.0 119 37.8
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 3.5e-09 67.0 85 43.5
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 4.5e-09 66.6 63 49.2
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 5.9e-09 66.2 64 46.9
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 5.9e-09 66.2 64 46.9
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.3e-08 65.1 71 43.7
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 1.3e-08 65.1 63 47.6
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-08 65.1 63 47.6
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 1.3e-08 65.1 64 45.3
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 1.3e-08 65.1 64 45.3
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 1.3e-08 65.1 64 50.0
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 3.8e-08 63.5 64 45.3
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 5.0e-08 63.2 72 43.1
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 1.1e-07 62.0 37 78.4
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 1.1e-07 62.0 46 65.2
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 1.5e-07 61.6 72 44.4
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 1.9e-07 61.2 60 45.0
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 4.2e-07 60.1 146 71.2
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 5.5e-07 59.7 65 43.1
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 7.2e-07 59.3 50 48.0
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 9.5e-07 58.9 88 36.4
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 4.7e-06 56.6 120 32.5
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 6.1e-06 56.2 149 31.5
Actinidia17724 Actinidia chinensis HOM05D002804 ORTHO05D003755 8.0e-06 55.8 65 36.9


User provided reference genes

Program Settings