Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 0.0e+00 1200.3 616 100.0
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 0.0e+00 1102.0 623 91.2
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 0.0e+00 1083.2 617 90.0
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 0.0e+00 1078.2 622 89.4
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 2.3e-308 1061.6 618 88.5
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.9e-307 1058.5 619 87.9
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 3.6e-306 1054.3 618 88.2
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 7.6e-304 1046.6 618 86.4
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 7.6e-304 1046.6 618 86.4
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 1.4e-294 1015.8 618 84.6
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 2.3e-292 1008.4 618 83.8
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 2.3e-292 1008.4 617 83.5
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 6.7e-292 1006.9 618 84.3
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 3.3e-291 1004.6 617 84.1
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 4.3e-291 1004.2 618 83.8
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 4.3e-291 1004.2 617 83.1
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 7.4e-291 1003.4 617 84.0
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 2.1e-290 1001.9 618 83.8
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 3.7e-290 1001.1 617 83.0
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 4.1e-289 997.7 614 82.7
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 1.5e-288 995.7 617 82.3
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.5e-288 995.7 618 83.2
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.0e-288 995.3 624 81.9
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 2.6e-288 995.0 618 83.2
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 8.4e-287 989.9 618 82.8
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 1.4e-286 989.2 618 82.8
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 4.2e-286 987.6 618 82.4
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.2e-286 987.6 628 81.1
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.6e-285 985.7 618 82.5
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 2.3e-284 981.9 614 81.1
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 5.1e-284 980.7 641 79.6
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 4.3e-283 977.6 617 81.5
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.8e-282 974.9 618 82.0
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 3.7e-282 974.5 618 81.2
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 1.5e-280 969.1 617 80.7
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 2.6e-280 968.4 617 80.4
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 4.5e-280 967.6 617 81.5
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 1.0e-279 966.5 616 81.5
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 1.0e-279 966.5 578 86.5
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 5.0e-279 964.1 618 80.7
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 8.5e-279 963.4 616 79.5
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.5e-278 961.8 622 82.2
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 4.2e-278 961.1 618 80.3
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 4.6e-277 957.6 684 75.4
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 5.1e-276 954.1 621 79.5
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.5e-275 952.6 656 76.5
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.3e-274 949.5 617 78.6
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 2.8e-274 948.3 617 78.1
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 5.9e-272 940.6 618 79.4
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 2.7e-269 931.8 613 76.7
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.4e-268 929.5 613 76.3
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 5.1e-268 927.5 753 67.9
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 9.7e-267 923.3 618 76.7
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 1.3e-266 922.9 610 76.9
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 6.3e-266 920.6 616 76.5
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 6.3e-266 920.6 616 75.8
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 3.1e-265 918.3 616 76.1
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 4.1e-265 917.9 616 75.6
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 7.0e-265 917.1 616 75.6
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 9.1e-265 916.8 616 76.6
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 2.6e-264 915.2 617 76.0
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 7.7e-264 913.7 616 76.0
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 1.0e-263 913.3 616 75.6
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 1.3e-263 912.9 644 73.1
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 1.7e-263 912.5 609 75.9
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 1.1e-259 899.8 617 74.2
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 2.6e-259 898.7 649 72.0
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 5.7e-259 897.5 617 75.0
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 1.3e-258 896.3 615 75.1
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 4.8e-258 894.4 629 73.6
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 1.1e-257 893.3 618 75.1
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 2.0e-256 889.0 614 74.8
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 2.6e-256 888.6 614 74.6
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 5.5e-254 880.9 614 73.1
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 2.1e-253 879.0 614 72.8
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.0e-252 876.7 541 82.8
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 7.5e-251 870.5 616 71.1
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 3.5e-248 861.7 617 72.6
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.2e-247 859.0 614 72.5
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 1.5e-246 856.3 616 72.2
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 4.2e-246 854.7 574 75.8
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 4.0e-244 848.2 582 75.1
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 5.2e-244 847.8 633 70.8
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.2e-243 846.7 617 71.8
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 4.9e-242 841.3 615 70.4
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 9.1e-241 837.0 599 71.3
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 2.9e-239 832.0 516 81.4
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 1.5e-238 829.7 516 82.2
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 3.3e-238 828.6 639 69.2
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 4.0e-236 821.6 513 83.2
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 5.2e-236 821.2 601 70.0
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 3.9e-231 805.1 616 69.2
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.1e-229 799.3 616 67.2
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 6.2e-221 771.2 446 87.7
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 2.5e-206 722.6 615 58.0
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 1.1e-204 717.2 566 69.4
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 1.1e-204 717.2 468 77.6
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.2e-201 705.3 557 68.2
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 3.9e-199 698.7 619 57.2
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 9.6e-190 667.5 614 55.9
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 1.5e-179 633.6 649 51.2
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 7.4e-174 614.8 364 87.1
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.5e-163 580.5 391 79.3
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 3.8e-162 575.9 488 67.6
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 6.5e-162 575.1 342 88.3
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 1.3e-157 560.8 360 80.8
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.6e-155 553.1 616 48.2
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 1.4e-151 540.8 616 47.1
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 4.2e-129 466.1 364 66.8
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.0e-122 444.9 596 45.1
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 2.3e-119 433.7 511 44.6
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 5.9e-115 419.1 374 64.2
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.3e-114 417.9 282 80.1
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 5.6e-105 386.0 457 53.2
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.9e-65 254.6 152 86.8
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 5.3e-63 246.5 144 87.5
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 5.8e-62 243.0 175 71.4
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.1e-60 238.8 171 72.5
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.2e-60 236.9 134 89.6
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.9e-58 230.3 186 60.2
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 5.0e-45 186.8 105 93.3
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.0e-42 179.1 135 67.4
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.4e-42 178.7 177 59.3
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 6.3e-40 169.9 116 71.6
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 5.9e-38 163.3 100 87.0
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 2.9e-37 161.0 150 59.3
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 1.2e-35 155.6 122 66.4
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 4.4e-33 147.1 97 70.1
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 2.8e-32 144.4 107 65.4
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 7.0e-31 139.8 86 84.9
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.6e-30 138.7 74 95.9
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.1e-23 114.4 84 73.8
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 6.5e-21 106.7 106 50.0
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 9.4e-20 102.8 54 88.9
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 3.6e-19 100.9 59 78.0
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 3.6e-19 100.9 59 78.0
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 2.3e-18 98.2 50 90.0
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 5.2e-18 97.1 58 74.1
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 5.2e-18 97.1 59 69.5
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 5.2e-18 97.1 59 69.5
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 4.4e-17 94.0 116 54.3
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.7e-16 92.0 76 63.2
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 5.0e-13 80.5 43 83.7
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 8.6e-13 79.7 51 70.6
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 3.3e-12 77.8 56 60.7
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 1.4e-10 72.4 80 50.0
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 9.8e-09 66.2 38 76.3
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 4.1e-07 60.8 48 70.8
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 7.8e-06 56.6 43 69.8


User provided reference genes

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