Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0006429 Lotus japonicus HOM05D006433 ORTHO05D005382 1.2e-127 459.9 252 100.0
Medtr1g037520 Medicago truncatula HOM05D006433 ORTHO05D005382 2.6e-64 249.6 258 60.5
Psat6g135800 Pisum sativum HOM05D006433 ORTHO05D005382 3.7e-55 219.2 254 56.3
TPR.G39976 Trifolium pratense HOM05D006433 ORTHO05D005382 7.0e-54 214.9 247 60.3
Glyma.09G282600 Glycine max HOM05D006433 ORTHO05D005382 1.4e-49 200.7 261 55.6
Phvul.003G005000 Phaseolus vulgaris HOM05D006433 ORTHO05D005382 2.1e-42 176.8 257 51.4
VMungo0251G3481 Vigna mungo HOM05D006433 ORTHO05D005382 2.1e-42 176.8 251 51.4
Lalb_Chr10g0094961 Lupinus albus HOM05D006433 ORTHO05D005382 8.0e-42 174.9 266 49.6
arahy.Tifrunner.gnm1.ann1.0GGX7L Arachis hypogaea HOM05D006433 ORTHO05D005382 1.5e-32 144.1 243 45.3
arahy.Tifrunner.gnm1.ann1.X1AWTF Arachis hypogaea HOM05D006433 ORTHO05D005382 9.5e-27 124.8 242 43.4
Glyma.20G002800 Glycine max HOM05D006433 ORTHO05D005382 1.0e-25 121.3 248 40.3
Haze_11768 Corylus avellana HOM05D006433 ORTHO05D005382 3.1e-25 119.8 319 34.2
Cfa008752 Carpinus fangiana HOM05D006433 ORTHO05D005382 8.9e-25 118.2 306 35.0
Duzib132G0593 Durio zibethinus HOM05D006433 ORTHO05D005382 3.4e-24 116.3 287 32.8
Thecc.02G159800 Theobroma cacao HOM05D006433 ORTHO05D005382 4.1e-22 109.4 289 31.8
CiPaw.05G169900 Carya illinoinensis HOM05D006433 ORTHO05D005382 2.7e-21 106.7 317 32.2
arahy.Tifrunner.gnm1.ann1.48DCIV Arachis hypogaea HOM05D056638 ORTHO05D005382 1.0e-20 104.8 286 33.2
Gohir.A03G164900 Gossypium hirsutum HOM05D006433 ORTHO05D005382 1.1e-19 101.3 271 31.0
Gorai.005G210800 Gossypium raimondii HOM05D006433 ORTHO05D005382 9.5e-19 98.2 268 31.0
COL.COLO4_03341 Corchorus olitorius HOM05D006433 ORTHO05D005382 2.1e-18 97.1 92 54.3
TAR371G0604 Trochodendron aralioides HOM05D006433 ORTHO05D005382 2.1e-18 97.1 310 29.4
Duzib248G0841 Durio zibethinus HOM05D006433 ORTHO05D005382 3.6e-18 96.3 89 52.8
Gohir.D02G188100 Gossypium hirsutum HOM05D006433 ORTHO05D005382 3.6e-18 96.3 266 30.8
Actinidia13713 Actinidia chinensis HOM05D006433 ORTHO05D005382 6.2e-18 95.5 276 33.7
TWI74G1071 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 3.1e-17 93.2 268 30.2
Sopen04g004420 Solanum pennellii HOM05D006433 ORTHO05D005382 5.2e-17 92.4 84 54.8
TAR629G0072 Trochodendron aralioides HOM05D006433 ORTHO05D005382 5.2e-17 92.4 288 29.2
Actinidia38416 Actinidia chinensis HOM05D006433 ORTHO05D005382 1.5e-16 90.9 81 56.8
PGSC0003DMG400032563 Solanum tuberosum HOM05D006433 ORTHO05D005382 2.6e-16 90.1 84 53.6
TWI77G0994 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 3.4e-16 89.7 271 30.3
Nitab4.5_0000771g0160 Nicotiana tabacum HOM05D006433 ORTHO05D005382 5.8e-16 89.0 80 51.2
Prupe.1G347600 Prunus persica HOM05D006433 ORTHO05D005382 5.8e-16 89.0 80 53.8
Gorai.008G148300 Gossypium raimondii HOM05D006433 ORTHO05D005382 7.5e-16 88.6 267 32.6
Solyc04g009305.1 Solanum lycopersicum HOM05D006433 ORTHO05D005382 7.5e-16 88.6 117 41.9
Gohir.D12G137000 Gossypium hirsutum HOM05D006433 ORTHO05D005382 9.8e-16 88.2 269 32.7
Sabra07G0060600 Salix brachista HOM05D006433 ORTHO05D005382 2.9e-15 86.7 120 44.2
Glyma.11G100200 Glycine max HOM05D025712 ORTHO05D029749 3.7e-15 86.3 219 34.7
Ciclev10031878m.g Citrus clementina HOM05D006433 ORTHO05D005382 4.9e-15 85.9 122 42.6
Cpa.g.sc0.139 Carica papaya HOM05D006433 ORTHO05D005382 8.3e-15 85.1 277 30.3
Nitab4.5_0005356g0050 Nicotiana tabacum HOM05D006433 ORTHO05D005382 8.3e-15 85.1 132 36.4
ECA246G5167 Erigeron canadensis HOM05D006433 ORTHO05D005382 1.1e-14 84.7 144 39.6
Lj6A717T151 Lonicera japonica HOM05D006433 ORTHO05D005382 1.4e-14 84.3 147 38.8
MBI03_g09362_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 1.4e-14 84.3 110 43.6
Manes.03G007400 Manihot esculenta HOM05D006433 ORTHO05D005382 1.4e-14 84.3 284 32.4
PGR142G2540 Punica granatum HOM05D006433 ORTHO05D005382 1.4e-14 84.3 84 51.2
CiPaw.06G061400 Carya illinoinensis HOM05D006433 ORTHO05D005382 1.9e-14 84.0 306 28.8
Cc11_g02400 Coffea canephora HOM05D006433 ORTHO05D005382 2.4e-14 83.6 159 34.6
C09p68700 Brassica napus HOM05D006433 ORTHO05D005382 4.1e-14 82.8 82 51.2
BolC9t59616H Brassica oleracea HOM05D006433 ORTHO05D005382 4.1e-14 82.8 82 51.2
Nitab4.5_0002132g0010 Nicotiana tabacum HOM05D006433 ORTHO05D005382 4.1e-14 82.8 131 38.2
CARHR190370 Cardamine hirsuta HOM05D006433 ORTHO05D005382 5.4e-14 82.4 119 37.8
Potri.005G092400 Populus trichocarpa HOM05D006433 ORTHO05D005382 5.4e-14 82.4 300 29.7
Carub.0006s2095 Capsella rubella HOM05D006433 ORTHO05D005382 9.2e-14 81.6 83 45.8
A10p28440 Brassica napus HOM05D006433 ORTHO05D005382 1.2e-13 81.3 254 30.7
BraA10t44892Z Brassica rapa HOM05D006433 ORTHO05D005382 1.2e-13 81.3 254 30.7
MD16G1002700 Malus domestica HOM05D006433 ORTHO05D005382 1.2e-13 81.3 89 47.2
DCAR_026896 Daucus carota HOM05D006433 ORTHO05D005382 2.1e-13 80.5 255 27.5
AT5G08240 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 3.5e-13 79.7 252 29.0
FAN17G1725 Fragaria x ananassa HOM05D006433 ORTHO05D005382 3.5e-13 79.7 103 43.7
Glyma.12G026100 Glycine max HOM05D025712 ORTHO05D029749 3.5e-13 79.7 203 37.9
Gohir.A12G133500 Gossypium hirsutum HOM05D006433 ORTHO05D005382 4.6e-13 79.3 269 31.6
MBI06_g16016_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 6.0e-13 79.0 107 43.9
CARHR204930 Cardamine hirsuta HOM05D006433 ORTHO05D005382 7.8e-13 78.6 81 46.9
Eucgr.G02576 Eucalyptus grandis HOM05D006433 ORTHO05D005382 7.8e-13 78.6 78 53.8
FvH4_4g36960 Fragaria vesca HOM05D006433 ORTHO05D005382 7.8e-13 78.6 125 40.0
FAN12G0758 Fragaria x ananassa HOM05D006433 ORTHO05D005382 7.8e-13 78.6 125 40.0
AL6G18640 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 1.0e-12 78.2 252 31.0
RcHm_v2.0_Chr4g0446731 Rosa chinensis HOM05D006433 ORTHO05D005382 1.7e-12 77.4 136 34.6
MD13G1005200 Malus domestica HOM05D006433 ORTHO05D005382 2.3e-12 77.0 150 36.0
ATR0618G439 Amborella trichopoda HOM05D006433 ORTHO05D005382 3.0e-12 76.6 137 40.1
Thhalv10005318m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 3.0e-12 76.6 92 43.5
FAN07G1145 Fragaria x ananassa HOM05D006433 ORTHO05D005382 3.0e-12 76.6 123 39.8
Aa31LG11G2650 Aethionema arabicum HOM05D006433 ORTHO05D005382 3.9e-12 76.3 84 41.7
DCAR_002584 Daucus carota HOM05D006433 ORTHO05D005382 3.9e-12 76.3 101 41.6
AUR62032989 Chenopodium quinoa HOM05D006433 ORTHO05D005382 5.1e-12 75.9 262 27.9
Lsat_1_v5_gn_3_35360 Lactuca sativa HOM05D006433 ORTHO05D005382 5.1e-12 75.9 119 36.1
TAR011G0003 Trochodendron aralioides HOM05D008701 ORTHO05D010238 5.1e-12 75.9 90 47.8
AUR62017700 Chenopodium quinoa HOM05D006433 ORTHO05D005382 8.6e-12 75.1 252 29.0
Aa31LG3G18330 Aethionema arabicum HOM05D006433 ORTHO05D005382 1.1e-11 74.7 239 30.5
Sabra05G0076500 Salix brachista HOM05D006433 ORTHO05D005382 1.1e-11 74.7 291 27.1
QL03p044176 Quercus lobata HOM05D006433 ORTHO05D005382 1.5e-11 74.3 75 50.7
Thhalv10014452m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 1.9e-11 73.9 256 27.0
Potri.007G071900 Populus trichocarpa HOM05D006433 ORTHO05D005382 2.5e-11 73.6 292 27.4
SGA_v2.0_scaffold6G03215 Striga asiatica HOM05D006433 ORTHO05D005382 2.5e-11 73.6 244 27.0
TAR626G1447 Trochodendron aralioides HOM05D008701 ORTHO05D010238 2.5e-11 73.6 84 47.6
AT5G23160 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 3.3e-11 73.2 256 27.3
BcaB07g29865 Brassica carinata HOM05D006433 ORTHO05D005382 5.6e-11 72.4 117 35.0
BraA02t09057Z Brassica rapa HOM05D006433 ORTHO05D005382 7.3e-11 72.0 82 42.7
Carub.0006s0712 Capsella rubella HOM05D006433 ORTHO05D005382 7.3e-11 72.0 260 25.4
AL6G34350 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 9.5e-11 71.6 261 25.7
Migut.E00694 Erythranthe guttata HOM05D006433 ORTHO05D005382 1.6e-10 70.9 86 40.7
SalBow2G0414 Salvia bowleyana HOM05D006433 ORTHO05D005382 2.8e-10 70.1 134 35.8
A02p41140 Brassica napus HOM05D006433 ORTHO05D005382 3.6e-10 69.7 81 39.5
Sabra16G0271700 Salix brachista HOM05D006433 ORTHO05D005382 3.6e-10 69.7 86 41.9
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 3.6e-10 69.7 86 41.9
Nn1g03826 Nelumbo nucifera HOM05D008701 ORTHO05D005382 4.7e-10 69.3 130 37.7
Sp6g34710 Schrenkiella parvula HOM05D006433 ORTHO05D005382 6.2e-10 68.9 258 29.1
Sc06g0007710 Simmondsia chinensis HOM05D006433 ORTHO05D005382 6.2e-10 68.9 261 27.6
TWI39G0991 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 1.1e-09 68.2 236 27.5
C02p61000 Brassica napus HOM05D006433 ORTHO05D005382 2.3e-09 67.0 233 26.6
CANSAT56G2818 Cannabis sativa HOM05D006433 ORTHO05D005382 2.3e-09 67.0 300 27.3
Dinv08359 Davidia involucrata HOM05D012187 ORTHO05D005382 2.3e-09 67.0 132 34.1
Actinidia09967 Actinidia chinensis HOM05D006433 ORTHO05D005382 3.1e-09 66.6 118 38.1
TWI38G1693 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 3.1e-09 66.6 221 28.1
COL.COLO4_06754 Corchorus olitorius HOM05D008701 ORTHO05D010238 6.8e-09 65.5 112 40.2
Duzib213G0682 Durio zibethinus HOM05D013385 ORTHO05D005382 6.8e-09 65.5 98 36.7
BcaC03g18036 Brassica carinata HOM05D006433 ORTHO05D005382 8.9e-09 65.1 237 24.9
ClCG09G004510 Citrullus lanatus HOM05D027220 ORTHO05D005382 8.9e-09 65.1 211 30.3
Duzib213G0120 Durio zibethinus HOM05D013385 ORTHO05D005382 8.9e-09 65.1 98 36.7
BolC2t12149H Brassica oleracea HOM05D006433 ORTHO05D005382 1.2e-08 64.7 230 24.8
Duzib268G1412 Durio zibethinus HOM05D013385 ORTHO05D005382 1.5e-08 64.3 68 42.6
Manes.11G107400 Manihot esculenta HOM05D006433 ORTHO05D005382 1.5e-08 64.3 224 29.5
Aqoxy5G03711 Aquilegia oxysepala HOM05D006433 ORTHO05D005382 2.0e-08 63.9 77 41.6
BcaNung05094 Brassica carinata HOM05D006433 ORTHO05D005382 3.4e-08 63.2 251 29.1
Duzib052G1245 Durio zibethinus HOM05D008701 ORTHO05D010238 3.4e-08 63.2 89 42.7
Potri.001G408900 Populus trichocarpa HOM05D006433 ORTHO05D005382 4.4e-08 62.8 83 37.3
Gohir.D02G184600 Gossypium hirsutum HOM05D008701 ORTHO05D010238 5.8e-08 62.4 71 42.3
Gorai.005G206900 Gossypium raimondii HOM05D008701 ORTHO05D010238 9.9e-08 61.6 89 39.3
Potri.013G149300 Populus trichocarpa HOM05D008701 ORTHO05D010238 9.9e-08 61.6 134 37.3
Thecc.02G167700 Theobroma cacao HOM05D008701 ORTHO05D010238 1.3e-07 61.2 81 43.2
BcaB08g37272 Brassica carinata HOM05D006433 ORTHO05D005382 2.2e-07 60.5 239 27.6
Rhsim06G0192100 Rhododendron simsii HOM05D012187 ORTHO05D021147 2.2e-07 60.5 208 31.7
Dinv02575 Davidia involucrata HOM05D008701 ORTHO05D028399 3.7e-07 59.7 102 35.3
Thecc.07G068900 Theobroma cacao HOM05D013385 ORTHO05D005382 3.7e-07 59.7 82 42.7
TWI36G1014 Tripterygium wilfordii HOM05D008701 ORTHO05D010238 3.7e-07 59.7 61 52.5
MELO3C023593.2 Cucumis melo HOM05D027220 ORTHO05D005382 4.9e-07 59.3 127 32.3
DCAR_025546 Daucus carota HOM05D006433 ORTHO05D005382 6.4e-07 58.9 197 26.4
Gohir.A03G161300 Gossypium hirsutum HOM05D008701 ORTHO05D010238 6.4e-07 58.9 61 44.3
TAR624G0030 Trochodendron aralioides HOM05D008701 ORTHO05D010238 8.3e-07 58.5 102 33.3
TAR624G0398 Trochodendron aralioides HOM05D008701 ORTHO05D010238 8.3e-07 58.5 102 33.3
SEGI_06945 Sequoiadendron giganteum HOM05D020619 ORTHO05D005382 1.4e-06 57.8 143 30.8
Oeu063832.1 Olea europaea HOM05D006433 ORTHO05D005382 2.4e-06 57.0 208 26.9
HPP92_022556 Vanilla planifolia HOM05D006433 ORTHO05D005382 2.4e-06 57.0 79 40.5
Gohir.A01G069700 Gossypium hirsutum HOM05D013385 ORTHO05D005382 3.2e-06 56.6 73 43.8
A03p03690 Brassica napus HOM05D006433 ORTHO05D005382 9.2e-06 55.1 202 27.7
BraA03t09717Z Brassica rapa HOM05D006433 ORTHO05D005382 9.2e-06 55.1 202 27.7


User provided reference genes

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