Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0006280 Lotus japonicus HOM05D008067 ORTHO05D010226 2.0e-39 165.2 80 100.0
Lj2g0025160 Lotus japonicus HOM05D008067 ORTHO05D010226 1.8e-32 142.1 80 85.0
Lj2g0022306 Lotus japonicus HOM05D008067 ORTHO05D010226 2.9e-30 134.8 80 83.8
Lj2g0013738 Lotus japonicus HOM05D008067 ORTHO05D010226 8.2e-25 116.7 75 77.3
Glyma.09G190000 Glycine max HOM05D008067 ORTHO05D010226 1.0e-19 99.8 82 67.1
Glyma.07G086900 Glycine max HOM05D008067 ORTHO05D010226 2.0e-18 95.5 80 67.5
Phvul.004G162800 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 8.2e-17 90.1 84 61.9
Psat1g041240 Pisum sativum HOM05D008067 ORTHO05D010226 4.1e-16 87.8 82 61.0
TPR.G35272 Trifolium pratense HOM05D003111 ORTHO05D003502 7.7e-15 83.6 72 63.9
Medtr6g086485 Medicago truncatula HOM05D008067 ORTHO05D010226 1.0e-14 83.2 88 55.7
Medtr8g083450 Medicago truncatula HOM05D008067 ORTHO05D010226 1.9e-13 79.0 71 59.2
ClCG11G002490 Citrullus lanatus HOM05D008067 ORTHO05D010226 3.2e-13 78.2 73 60.3
Lalb_Chr05g0222841 Lupinus albus HOM05D008067 ORTHO05D010226 3.2e-13 78.2 79 54.4
QL02p085507 Quercus lobata HOM05D008067 ORTHO05D010226 5.5e-13 77.4 76 57.9
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 1.2e-12 76.3 79 54.4
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 1.2e-12 76.3 79 54.4
Glyma.05G231500 Glycine max HOM05D008067 ORTHO05D010226 1.6e-12 75.9 62 61.3
CiPaw.04G164800 Carya illinoinensis HOM05D008067 ORTHO05D010226 2.1e-12 75.5 80 53.8
Sed0012648 Sechium edule HOM05D008067 ORTHO05D010226 2.1e-12 75.5 80 55.0
Potri.018G079200 Populus trichocarpa HOM05D008067 ORTHO05D010226 3.6e-12 74.7 66 60.6
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 3.6e-12 74.7 73 58.9
MELO3C004555.2 Cucumis melo HOM05D008067 ORTHO05D010226 4.7e-12 74.3 80 57.5
Glyma.08G039000 Glycine max HOM05D008067 ORTHO05D010226 6.1e-12 73.9 64 60.9
Peaxi162Scf00560g00114 Petunia axillaris HOM05D008067 ORTHO05D010226 6.1e-12 73.9 80 51.2
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 8.0e-12 73.6 79 51.9
Psat7g013560 Pisum sativum HOM05D008067 ORTHO05D010226 8.0e-12 73.6 80 57.5
PGSC0003DMG400000315 Solanum tuberosum HOM05D008067 ORTHO05D010226 1.0e-11 73.2 58 60.3
Thecc.09G111500 Theobroma cacao HOM05D008067 ORTHO05D010226 1.0e-11 73.2 79 51.9
TPR.G23486 Trifolium pratense HOM05D008067 ORTHO05D010226 1.0e-11 73.2 79 55.7
CsaV3_2G002290 Cucumis sativus L. HOM05D008067 ORTHO05D010226 1.4e-11 72.8 73 56.2
TPR.G21702 Trifolium pratense HOM05D008067 ORTHO05D010226 1.4e-11 72.8 88 54.5
Prupe.7G230000 Prunus persica HOM05D008067 ORTHO05D010226 2.3e-11 72.0 79 53.2
Ciclev10010044m.g Citrus clementina HOM05D008067 ORTHO05D010226 6.7e-11 70.5 80 51.2
CSS0009961 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 1.1e-10 69.7 68 52.9
CSS0037112 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 1.1e-10 69.7 68 52.9
COL.COLO4_34910 Corchorus olitorius HOM05D008067 ORTHO05D010226 1.1e-10 69.7 83 50.6
Sed0011788 Sechium edule HOM05D008067 ORTHO05D010226 4.4e-10 67.8 81 48.1
FAN23G0784 Fragaria x ananassa HOM05D008067 ORTHO05D010226 1.3e-09 66.2 86 47.7
Solyc12g007060.1 Solanum lycopersicum HOM05D008067 ORTHO05D010226 1.3e-09 66.2 60 55.0
Sopen12g003050 Solanum pennellii HOM05D008067 ORTHO05D010226 1.3e-09 66.2 60 55.0
Lalb_Chr22g0352831 Lupinus albus HOM05D008067 ORTHO05D010226 1.7e-09 65.9 78 52.6
Manes.03G019700 Manihot esculenta HOM05D008067 ORTHO05D010226 1.7e-09 65.9 80 52.5
FvH4_1g04950 Fragaria vesca HOM05D008067 ORTHO05D010226 2.2e-09 65.5 81 48.1
RcHm_v2.0_Chr2g0090561 Rosa chinensis HOM05D008067 ORTHO05D010226 2.2e-09 65.5 78 48.7
Gorai.010G070100 Gossypium raimondii HOM05D008067 ORTHO05D010226 2.8e-09 65.1 78 53.8
Gohir.A06G061900 Gossypium hirsutum HOM05D008067 ORTHO05D010226 3.7e-09 64.7 75 54.7
Gohir.D06G060201 Gossypium hirsutum HOM05D008067 ORTHO05D010226 6.3e-09 63.9 81 51.9
Nitab4.5_0003537g0010 Nicotiana tabacum HOM05D008067 ORTHO05D010226 6.3e-09 63.9 76 46.1
HPP92_010803 Vanilla planifolia HOM05D008067 ORTHO05D010226 6.3e-09 63.9 60 53.3
Lj4g0026171 Lotus japonicus HOM05D008067 ORTHO05D010226 8.2e-09 63.5 52 61.5
Gohir.D07G005400 Gossypium hirsutum HOM05D008067 ORTHO05D010226 1.1e-08 63.2 68 55.9
Gorai.001G004900 Gossypium raimondii HOM05D008067 ORTHO05D010226 1.1e-08 63.2 68 55.9
Atru.chr7.1341 Acer truncatum HOM05D008067 ORTHO05D010226 1.4e-08 62.8 78 43.6
FAN28G1234 Fragaria x ananassa HOM05D008067 ORTHO05D010226 1.8e-08 62.4 86 46.5
Phvul.002G313700 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 1.8e-08 62.4 41 70.7
Gohir.A07G006600 Gossypium hirsutum HOM05D008067 ORTHO05D010226 2.4e-08 62.0 68 54.4
RhsimUnG0085400 Rhododendron simsii HOM05D008067 ORTHO05D010226 5.3e-08 60.8 72 48.6
SHI02746 Sapria himalayana HOM05D008067 ORTHO05D010226 5.3e-08 60.8 40 70.0
TAR636G2707 Trochodendron aralioides HOM05D003111 ORTHO05D003502 7.0e-08 60.5 62 56.5
EL10Ac8g18505 Beta vulgaris HOM05D008067 ORTHO05D010226 2.0e-07 58.9 55 60.0
Ah.09g227900 Amaranthus hybridus HOM05D008067 ORTHO05D010226 3.5e-07 58.2 54 61.1
CiPaw.03G232800 Carya illinoinensis HOM05D008067 ORTHO05D010226 3.5e-07 58.2 86 44.2
DCAR_028716 Daucus carota HOM05D008067 ORTHO05D010226 3.5e-07 58.2 61 54.1
Nn8g39208 Nelumbo nucifera HOM05D008067 ORTHO05D010226 3.5e-07 58.2 57 52.6
Nn2g11761 Nelumbo nucifera HOM05D008067 ORTHO05D010226 5.9e-07 57.4 55 49.1
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 5.9e-07 57.4 58 50.0
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 7.7e-07 57.0 58 50.0
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 2.2e-06 55.5 27 85.2
Peaxi162Scf00546g00115 Petunia axillaris HOM05D008067 ORTHO05D010226 2.9e-06 55.1 62 50.0
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 8.5e-06 53.5 45 55.6
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 8.5e-06 53.5 49 65.3
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 8.5e-06 53.5 45 55.6
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 8.5e-06 53.5 27 81.5


User provided reference genes

Program Settings