Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 1.1e-122 443.4 225 100.0
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 8.9e-77 290.8 224 69.2
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 2.6e-76 289.3 225 67.6
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 3.4e-76 288.9 225 68.9
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 1.3e-75 287.0 225 68.9
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 2.7e-73 279.3 224 67.9
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 3.0e-72 275.8 227 64.8
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 6.2e-70 268.1 227 63.4
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 4.4e-60 235.3 149 78.5
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 5.8e-60 235.0 187 66.3
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 1.3e-56 223.8 184 63.6
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 5.6e-55 218.4 220 58.2
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 1.7e-51 206.8 221 52.5
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 2.9e-51 206.1 219 55.3
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 3.8e-51 205.7 234 53.4
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 2.4e-50 203.0 224 52.7
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 7.1e-50 201.4 225 52.4
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 1.6e-49 200.3 177 59.9
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 4.6e-49 198.7 230 51.3
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 1.8e-48 196.8 215 52.1
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 2.3e-48 196.4 224 52.2
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 3.0e-48 196.1 217 51.2
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 1.9e-47 193.4 228 49.6
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 4.3e-47 192.2 209 49.3
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 2.1e-46 189.9 176 58.0
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 2.1e-46 189.9 206 50.5
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 2.8e-46 189.5 227 51.1
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 4.8e-46 188.7 224 50.9
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 6.2e-46 188.3 208 52.9
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 6.2e-46 188.3 220 48.6
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 6.2e-46 188.3 220 48.6
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 6.2e-46 188.3 225 48.4
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 1.4e-45 187.2 225 51.6
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 1.8e-45 186.8 224 51.8
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 1.8e-45 186.8 223 51.6
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 2.4e-45 186.4 180 55.0
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 2.4e-45 186.4 227 49.8
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 4.0e-45 185.7 225 50.2
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 6.9e-45 184.9 223 51.1
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 6.9e-45 184.9 228 49.6
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 1.5e-44 183.7 205 51.2
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 1.5e-44 183.7 223 51.1
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 2.6e-44 183.0 224 50.4
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 7.6e-44 181.4 214 50.0
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 7.6e-44 181.4 228 48.2
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.0e-43 181.0 221 49.3
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 1.7e-43 180.3 222 52.3
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 2.2e-43 179.9 228 46.1
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 2.9e-43 179.5 216 48.1
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 3.8e-43 179.1 185 51.4
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 8.4e-43 177.9 180 56.7
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 1.4e-42 177.2 187 52.4
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 2.5e-42 176.4 185 53.5
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 4.2e-42 175.6 176 54.5
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 5.5e-42 175.3 202 52.5
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.2e-41 174.1 220 45.9
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 2.7e-41 172.9 168 54.2
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 6.0e-41 171.8 223 48.0
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 3.0e-40 169.5 226 47.3
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 3.0e-40 169.5 212 45.8
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 5.1e-40 168.7 227 44.1
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 1.9e-39 166.8 220 45.0
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 9.6e-39 164.5 216 45.8
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 9.6e-39 164.5 176 53.4
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 6.3e-38 161.8 200 45.5
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 1.1e-37 161.0 224 45.5
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 1.1e-37 161.0 184 52.2
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 1.4e-37 160.6 223 45.3
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 1.8e-37 160.2 176 51.7
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 3.1e-37 159.5 179 48.6
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 3.1e-37 159.5 229 42.8
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 5.3e-37 158.7 219 47.0
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 1.5e-36 157.1 221 43.9
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 1.5e-36 157.1 223 43.0
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 1.0e-35 154.5 224 42.0
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 1.0e-35 154.5 221 45.7
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 6.5e-35 151.8 223 42.2
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 1.1e-34 151.0 225 40.9
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 1.4e-34 150.6 225 43.1
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 2.5e-34 149.8 176 52.3
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 3.2e-34 149.4 223 42.2
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 1.6e-33 147.1 174 48.3
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 2.1e-33 146.7 194 45.4
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 2.1e-33 146.7 153 52.9
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 3.3e-31 139.4 172 47.7
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 4.3e-31 139.0 189 45.5
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 7.4e-31 138.3 153 47.1
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 1.6e-30 137.1 285 36.1
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 3.1e-29 132.9 141 56.0
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 6.9e-29 131.7 189 42.9
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 5.9e-28 128.6 174 45.4
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 1.9e-26 123.6 164 44.5
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 7.2e-26 121.7 222 34.2
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 2.1e-25 120.2 181 42.0
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 3.0e-24 116.3 168 41.7
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 3.3e-23 112.8 167 41.3
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 2.8e-22 109.8 151 45.0
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 1.4e-21 107.5 168 36.9
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 5.3e-21 105.5 145 44.8
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 5.3e-21 105.5 138 45.7
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 3.8e-19 99.4 141 42.6
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 5.0e-19 99.0 172 37.2
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 3.0e-16 89.7 108 43.5
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 3.3e-15 86.3 105 51.4
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 1.2e-09 67.8 75 46.7
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 1.2e-09 67.8 75 46.7
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 2.1e-09 67.0 76 48.7
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 3.3e-07 59.7 88 44.3
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 7.5e-07 58.5 141 33.3


User provided reference genes

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