Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0006172 Lotus japonicus HOM05D007070 ORTHO05D008892 2.5e-91 339.0 196 100.0
Medtr5g038970 Medicago truncatula HOM05D007070 ORTHO05D008892 2.4e-62 242.7 203 66.5
Ca_04760_v3 Cicer arietinum L. HOM05D007070 ORTHO05D008892 4.6e-61 238.4 203 71.4
Glyma.02G019200 Glycine max HOM05D007070 ORTHO05D008892 1.7e-60 236.5 196 66.3
COL.COLO4_22972 Corchorus olitorius HOM05D007070 ORTHO05D008892 2.3e-60 236.1 206 64.6
TWI75G1629 Tripterygium wilfordii HOM05D007070 ORTHO05D008892 3.9e-60 235.3 198 65.7
Lalb_Chr10g0098121 Lupinus albus HOM05D007070 ORTHO05D008892 6.6e-60 234.6 206 64.1
Hma1.2p1_0598F.1_g186810 Hydrangea macrophylla HOM05D007070 ORTHO05D008892 8.6e-60 234.2 127 89.8
Ah.02g131260 Amaranthus hybridus HOM05D007070 ORTHO05D008892 1.1e-59 233.8 128 87.5
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 1.1e-59 233.8 128 87.5
Manes.05G098800 Manihot esculenta HOM05D007070 ORTHO05D008892 1.9e-59 233.0 128 88.3
Duzib251G0126 Durio zibethinus HOM05D007070 ORTHO05D008892 3.3e-59 232.3 128 86.7
Gohir.A13G072600 Gossypium hirsutum HOM05D007070 ORTHO05D008892 3.3e-59 232.3 128 86.7
Thecc.02G352500 Theobroma cacao HOM05D007070 ORTHO05D008892 4.3e-59 231.9 128 88.3
TAR622G0001 Trochodendron aralioides HOM05D007070 ORTHO05D008892 5.6e-59 231.5 130 87.7
Gohir.D13G072700 Gossypium hirsutum HOM05D007070 ORTHO05D008892 9.5e-59 230.7 128 86.7
Gorai.013G083500 Gossypium raimondii HOM05D007070 ORTHO05D008892 9.5e-59 230.7 128 86.7
PGR119G1526 Punica granatum HOM05D007070 ORTHO05D008892 9.5e-59 230.7 128 85.9
Ciclev10032797m.g Citrus clementina HOM05D007070 ORTHO05D008892 1.2e-58 230.3 199 63.8
Cc11_g13320 Coffea canephora HOM05D007070 ORTHO05D008892 1.2e-58 230.3 128 87.5
Glyma.01G044500 Glycine max HOM05D007070 ORTHO05D008892 1.2e-58 230.3 201 71.6
VMungo1215G0639 Vigna mungo HOM05D007070 ORTHO05D008892 1.6e-58 229.9 128 85.2
MD13G1074900 Malus domestica HOM05D007070 ORTHO05D008892 2.1e-58 229.6 128 86.7
Psat2g122360 Pisum sativum HOM05D007070 ORTHO05D008892 2.8e-58 229.2 128 87.5
Haze_12036 Corylus avellana HOM05D007070 ORTHO05D008892 3.6e-58 228.8 189 65.1
CiPaw.05G138000 Carya illinoinensis HOM05D007070 ORTHO05D008892 4.7e-58 228.4 129 88.4
Duzib268G0688 Durio zibethinus HOM05D007070 ORTHO05D008892 8.1e-58 227.6 128 85.2
QL03p064901 Quercus lobata HOM05D007070 ORTHO05D008892 8.1e-58 227.6 127 86.6
SGA_v2.0_scaffold302G47841 Striga asiatica HOM05D007070 ORTHO05D008892 8.1e-58 227.6 128 84.4
Atru.chr11.1834 Acer truncatum HOM05D007070 ORTHO05D008892 1.1e-57 227.3 128 86.7
Cpa.g.sc183.28 Carica papaya HOM05D007070 ORTHO05D008892 1.1e-57 227.3 195 65.6
MELO3C012078.2 Cucumis melo HOM05D007070 ORTHO05D008892 1.1e-57 227.3 128 86.7
DCAR_007140 Daucus carota HOM05D007070 ORTHO05D008892 1.1e-57 227.3 129 86.8
Eucgr.G02521 Eucalyptus grandis HOM05D007070 ORTHO05D008892 1.1e-57 227.3 127 86.6
Phvul.002G088700 Phaseolus vulgaris HOM05D007070 ORTHO05D008892 1.1e-57 227.3 128 83.6
RcHm_v2.0_Chr4g0440151 Rosa chinensis HOM05D007070 ORTHO05D008892 1.1e-57 227.3 128 86.7
CsaV3_5G032500 Cucumis sativus L. HOM05D007070 ORTHO05D008892 1.4e-57 226.9 128 86.7
CSS0037166 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 2.4e-57 226.1 128 84.4
CSS0050316 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 2.4e-57 226.1 128 84.4
FvH4_4g31650 Fragaria vesca HOM05D007070 ORTHO05D008892 2.4e-57 226.1 128 85.9
FAN12G3127 Fragaria x ananassa HOM05D007070 ORTHO05D008892 2.4e-57 226.1 128 85.9
AUR62005745 Chenopodium quinoa HOM05D007070 ORTHO05D008892 4.0e-57 225.3 195 67.2
FAN07G2888 Fragaria x ananassa HOM05D007070 ORTHO05D008892 4.0e-57 225.3 128 85.9
FAN17G0782 Fragaria x ananassa HOM05D007070 ORTHO05D008892 4.0e-57 225.3 128 85.9
FAN22G1781 Fragaria x ananassa HOM05D007070 ORTHO05D008892 4.0e-57 225.3 128 85.9
Prupe.1G271300 Prunus persica HOM05D007070 ORTHO05D008892 4.0e-57 225.3 128 85.2
Sed0007814 Sechium edule HOM05D007070 ORTHO05D008892 4.0e-57 225.3 128 84.4
TAR374G1105 Trochodendron aralioides HOM05D007070 ORTHO05D008892 4.0e-57 225.3 130 83.8
arahy.Tifrunner.gnm1.ann1.P1GF9J Arachis hypogaea HOM05D007070 ORTHO05D008892 5.2e-57 224.9 195 64.6
AT1G14345 Arabidopsis thaliana HOM05D007070 ORTHO05D008892 6.8e-57 224.6 197 62.4
arahy.Tifrunner.gnm1.ann1.H49BTR Arachis hypogaea HOM05D007070 ORTHO05D008892 6.8e-57 224.6 193 63.7
Lj3P1040T26 Lonicera japonica HOM05D007070 ORTHO05D008892 8.9e-57 224.2 128 84.4
Potri.010G093300 Populus trichocarpa HOM05D007070 ORTHO05D008892 1.2e-56 223.8 200 63.0
AL1G26230 Arabidopsis lyrata HOM05D007070 ORTHO05D008892 2.6e-56 222.6 128 84.4
Sc04g0008310 Simmondsia chinensis HOM05D007070 ORTHO05D008892 4.4e-56 221.9 128 85.2
CARHR014780 Cardamine hirsuta HOM05D007070 ORTHO05D008892 5.8e-56 221.5 198 62.6
Thhalv10008846m.g Eutrema salsugineum HOM05D007070 ORTHO05D008892 5.8e-56 221.5 128 82.8
ClCG05G024460 Citrullus lanatus HOM05D007070 ORTHO05D008892 7.6e-56 221.1 125 85.6
Migut.L01320 Erythranthe guttata HOM05D007070 ORTHO05D008892 7.6e-56 221.1 128 82.0
Actinidia31196 Actinidia chinensis HOM05D007070 ORTHO05D008892 9.9e-56 220.7 127 83.5
CANSAT56G2723 Cannabis sativa HOM05D007070 ORTHO05D008892 9.9e-56 220.7 130 82.3
CDE05G3062 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 1.3e-55 220.3 130 83.8
Sabra10G0065800 Salix brachista HOM05D007070 ORTHO05D008892 1.3e-55 220.3 200 62.0
BcaB02g06484 Brassica carinata HOM05D007070 ORTHO05D008892 1.7e-55 219.9 197 61.4
C05p12140 Brassica napus HOM05D007070 ORTHO05D008892 1.7e-55 219.9 128 82.8
BolC5t29966H Brassica oleracea HOM05D007070 ORTHO05D008892 1.7e-55 219.9 128 82.8
Carub.0001s1403 Capsella rubella HOM05D007070 ORTHO05D008892 1.7e-55 219.9 197 60.4
CAN.G375.28 Capsicum annuum HOM05D007070 ORTHO05D008892 1.7e-55 219.9 133 85.0
SalBow2G0737 Salvia bowleyana HOM05D007070 ORTHO05D008892 2.2e-55 219.5 128 82.8
SalBow2G1571 Salvia bowleyana HOM05D007070 ORTHO05D008892 2.2e-55 219.5 128 82.8
Nitab4.5_0000141g0310 Nicotiana tabacum HOM05D007070 ORTHO05D008892 2.9e-55 219.2 131 82.4
Nitab4.5_0012600g0010 Nicotiana tabacum HOM05D007070 ORTHO05D008892 2.9e-55 219.2 131 82.4
BraA06t24215Z Brassica rapa HOM05D007070 ORTHO05D008892 3.8e-55 218.8 128 82.0
Aqoxy3G03327 Aquilegia oxysepala HOM05D007070 ORTHO05D008892 4.9e-55 218.4 130 83.1
Lsat_1_v5_gn_8_52140 Lactuca sativa HOM05D007070 ORTHO05D008892 6.4e-55 218.0 192 63.0
Rhsim12G0131600 Rhododendron simsii HOM05D007070 ORTHO05D008892 6.4e-55 218.0 126 82.5
RhsimUnG0241900 Rhododendron simsii HOM05D007070 ORTHO05D008892 6.4e-55 218.0 126 82.5
HanXRQChr08g0209191 Helianthus annuus HOM05D007070 ORTHO05D008892 8.4e-55 217.6 129 82.2
MSTRG.13406 Avicennia marina HOM05D007070 ORTHO05D008892 1.1e-54 217.2 128 82.0
A06p10330 Brassica napus HOM05D007070 ORTHO05D008892 1.1e-54 217.2 201 63.7
Solyc01g010640.3 Solanum lycopersicum HOM05D007070 ORTHO05D008892 1.4e-54 216.9 134 80.6
Sopen01g006270 Solanum pennellii HOM05D007070 ORTHO05D008892 1.4e-54 216.9 134 80.6
PGSC0003DMG400000874 Solanum tuberosum HOM05D007070 ORTHO05D008892 1.4e-54 216.9 134 80.6
Sp1g12710 Schrenkiella parvula HOM05D007070 ORTHO05D008892 2.4e-54 216.1 197 61.4
TPR.G36542 Trifolium pratense HOM05D007070 ORTHO05D008892 3.2e-54 215.7 119 85.7
PSO832G2327 Papaver somniferum HOM05D007070 ORTHO05D008892 5.4e-54 214.9 130 81.5
ATR0564G356 Amborella trichopoda HOM05D007070 ORTHO05D008892 9.2e-54 214.2 130 80.0
ECA236G0127 Erigeron canadensis HOM05D007070 ORTHO05D008892 9.2e-54 214.2 138 76.8
PSO591G0158 Papaver somniferum HOM05D007070 ORTHO05D008892 1.2e-53 213.8 130 80.8
MBI05_g00391_MAGBIO Magnolia biondii HOM05D007070 ORTHO05D008892 2.1e-53 213.0 130 82.3
Aa31LG1G700 Aethionema arabicum HOM05D007070 ORTHO05D008892 4.6e-53 211.8 194 62.9
Peaxi162Scf00026g00288 Petunia axillaris HOM05D007070 ORTHO05D008892 8.7e-52 207.6 136 79.4
THA.LOC104805942 Tarenaya hassleriana HOM05D007070 ORTHO05D008892 4.3e-51 205.3 121 83.5
CDE05G3277 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 1.2e-50 203.8 121 81.0
HPP92_018585 Vanilla planifolia HOM05D007070 ORTHO05D008892 5.3e-49 198.4 133 71.4
HPP92_018595 Vanilla planifolia HOM05D007070 ORTHO05D008892 2.6e-48 196.1 133 70.7
MSTRG.684 Avicennia marina HOM05D007070 ORTHO05D008892 2.9e-47 192.6 120 79.2
AagrBONN_evm.TU.Sc2ySwM_362.2904 Anthoceros agrestis HOM05D007070 ORTHO05D008892 3.2e-46 189.1 130 69.2
SEGI_28311 Sequoiadendron giganteum HOM05D007070 ORTHO05D008892 5.4e-46 188.3 130 74.6
unitig_699.g19919 Utricularia gibba HOM05D007070 ORTHO05D008892 1.6e-45 186.8 130 73.1
Os03g0170500 Oryza sativa ssp. japonica HOM05D007070 ORTHO05D008892 2.1e-45 186.4 113 80.5
BcaC05g25332 Brassica carinata HOM05D007070 ORTHO05D008892 2.7e-45 186.0 201 62.2
Zm00001eb402240 Zea mays HOM05D007070 ORTHO05D008892 4.6e-45 185.3 113 77.9
SMO329G0045 Selaginella moellendorffii HOM05D007070 ORTHO05D008892 1.1e-43 180.6 110 75.5
Mapoly0002s0258 Marchantia polymorpha HOM05D007070 ORTHO05D008892 3.6e-42 175.6 108 76.9
CBR_g47945 Chara braunii HOM05D007070 ORTHO05D008892 2.7e-37 159.5 118 61.0
AUR62028813 Chenopodium quinoa HOM05D007070 ORTHO05D008892 5.6e-35 151.8 128 62.5
Sc04g0008340 Simmondsia chinensis HOM05D007070 ORTHO05D008892 1.6e-34 150.2 128 62.5
Cre08.g358540 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 1.4e-22 110.5 116 44.0
MCO16G462 Micromonas commoda HOM05D007070 ORTHO05D008892 2.3e-20 103.2 112 45.5
PRCOL_00004582 Prasinoderma coloniale HOM05D007070 ORTHO05D008892 9.0e-17 91.3 108 43.5
Atru.chr2.2148 Acer truncatum HOM05D007070 ORTHO05D008892 2.2e-15 86.7 52 76.9
Cre07.g321300 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 2.5e-14 83.2 109 35.8


User provided reference genes

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