Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 1.2e-275 953.0 624 100.0
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 4.0e-167 592.4 573 66.7
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 1.4e-164 583.9 631 62.8
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 3.5e-163 579.3 638 60.8
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 6.8e-159 565.1 653 62.3
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 6.8e-159 565.1 653 62.3
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 3.4e-158 562.8 614 66.4
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 2.4e-156 556.6 640 60.3
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 3.5e-155 552.7 651 61.1
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 3.0e-154 549.7 641 64.9
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 1.6e-152 543.9 575 67.5
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 5.8e-150 535.4 583 64.8
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 1.7e-138 497.3 315 80.3
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 1.6e-136 490.7 346 73.4
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 1.1e-135 488.0 318 78.6
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 8.9e-135 485.0 347 74.4
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 3.4e-134 483.0 329 74.8
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 1.3e-133 481.1 410 69.3
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 2.2e-133 480.3 409 69.4
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 1.1e-132 478.0 349 74.5
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 1.1e-132 478.0 314 77.7
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 4.2e-132 476.1 395 69.1
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 5.4e-132 475.7 318 74.8
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 5.4e-132 475.7 312 78.2
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 2.1e-131 473.8 396 69.4
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 2.1e-131 473.8 415 70.8
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 4.6e-131 472.6 309 76.7
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 7.8e-131 471.9 336 73.5
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 1.3e-130 471.1 339 73.7
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 1.7e-130 470.7 410 64.4
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 3.9e-130 469.5 320 75.0
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 1.5e-129 467.6 340 73.5
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 2.5e-129 466.8 319 76.8
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 2.1e-128 463.8 339 71.4
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 8.1e-128 461.8 402 64.2
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 1.4e-127 461.1 321 74.8
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 1.4e-127 461.1 340 70.0
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 2.4e-127 460.3 346 68.8
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 5.3e-127 459.1 313 74.8
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 1.2e-126 458.0 323 72.8
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 3.4e-126 456.4 313 74.4
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 3.4e-126 456.4 314 72.9
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 5.8e-126 455.7 307 75.6
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 7.6e-126 455.3 340 69.7
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 1.3e-125 454.5 354 67.8
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 1.3e-125 454.5 328 71.3
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 1.3e-125 454.5 321 73.8
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 1.7e-125 454.1 313 73.8
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 4.9e-125 452.6 341 70.1
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 6.4e-125 452.2 350 68.3
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 6.4e-125 452.2 398 67.6
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 1.4e-124 451.1 310 75.2
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 1.4e-124 451.1 327 71.3
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 1.4e-124 451.1 313 72.8
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 1.9e-124 450.7 311 73.0
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 2.4e-124 450.3 312 74.0
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 2.4e-124 450.3 313 72.8
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.2e-123 448.0 413 62.7
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 2.7e-123 446.8 311 74.3
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 4.6e-123 446.0 319 71.5
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 3.9e-122 443.0 337 70.0
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 3.9e-122 443.0 432 62.0
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 8.7e-122 441.8 337 69.1
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 1.9e-121 440.7 315 69.5
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 1.9e-121 440.7 376 62.0
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 3.3e-121 439.9 320 70.0
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 4.3e-121 439.5 306 73.9
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.3e-120 438.0 320 70.6
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 1.3e-120 438.0 344 68.0
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 2.8e-120 436.8 320 69.7
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 1.4e-119 434.5 340 69.1
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 1.8e-119 434.1 317 69.1
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 1.8e-119 434.1 317 69.1
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 2.4e-119 433.7 317 69.1
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 2.4e-119 433.7 315 69.8
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 3.1e-119 433.3 321 69.8
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 5.3e-119 432.6 320 69.1
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 2.6e-118 430.3 349 65.9
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 9.9e-118 428.3 383 62.4
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 7.1e-116 422.2 340 67.4
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 7.1e-116 422.2 320 68.4
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 1.2e-115 421.4 316 70.3
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 2.7e-115 420.2 326 67.8
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 3.1e-111 406.8 310 68.1
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 4.0e-111 406.4 310 67.7
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 5.3e-111 406.0 318 66.0
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 8.7e-106 388.7 630 43.2
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 2.6e-102 377.1 302 63.6
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 1.9e-100 370.9 385 54.5
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 2.5e-100 370.5 311 60.8
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 1.6e-99 367.9 264 69.7
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 1.0e-98 365.2 252 72.6
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 1.2e-94 351.7 280 67.9
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 2.3e-90 337.4 250 71.2
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 2.0e-86 324.3 292 59.2
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 7.7e-78 295.8 220 68.2
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 7.7e-78 295.8 227 69.6
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 4.4e-65 253.4 311 50.2
Lj3A28G25 Lonicera japonica HOM05D006577 ORTHO05D008428 1.1e-63 248.8 184 69.0
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 6.5e-61 239.6 185 70.3
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 8.6e-53 212.6 157 67.5
Lj9P453T24 Lonicera japonica HOM05D006577 ORTHO05D008428 5.7e-49 199.9 147 68.0
HanXRQChr07g0198421 Helianthus annuus HOM05D006577 ORTHO05D008428 1.7e-48 198.4 175 61.7
MCO15G109 Micromonas commoda HOM05D006577 ORTHO05D008428 5.2e-42 176.8 308 36.7
TPR.G30154 Trifolium pratense HOM05D006577 ORTHO05D008428 1.9e-31 141.7 199 47.2
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 4.3e-28 130.6 101 70.3
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 1.2e-27 129.0 77 81.8
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 3.6e-27 127.5 77 81.8
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.8e-26 125.2 70 82.9
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 2.9e-24 117.9 131 55.0
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.7e-21 108.6 143 56.6
MD15G1000700 Malus domestica HOM05D006577 ORTHO05D008428 1.7e-21 108.6 117 54.7
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 8.6e-21 106.3 143 55.9
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 3.6e-19 100.9 143 55.2
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 6.2e-19 100.1 60 76.7
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 1.2e-17 95.9 68 69.1
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 1.3e-16 92.4 67 76.1
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 4.6e-14 84.0 39 92.3
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 2.3e-13 81.6 51 80.4
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 2.3e-13 81.6 51 80.4
Cre06.g280700 Chlamydomonas reinhardtii HOM05D006577 ORTHO05D008428 3.3e-12 77.8 120 35.0
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 2.4e-10 71.6 46 71.7


User provided reference genes

Program Settings