Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 0.0e+00 1235.3 689 100.0
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 0.0e+00 1109.7 693 87.7
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 0.0e+00 1100.1 690 88.0
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 0.0e+00 1093.2 695 86.6
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 0.0e+00 1075.1 690 87.0
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 0.0e+00 1075.1 677 86.1
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 1.4e-309 1065.8 691 86.0
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 2.9e-304 1048.1 692 84.8
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 3.8e-304 1047.7 689 85.1
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 3.6e-302 1041.2 686 82.7
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.7e-299 1032.3 690 82.5
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.2e-299 1031.9 687 82.0
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 6.3e-299 1030.4 689 81.7
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.6e-297 1025.8 687 81.8
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 1.6e-297 1025.8 657 85.2
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 2.0e-297 1025.4 729 78.9
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 7.7e-297 1023.5 687 82.5
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 6.5e-296 1020.4 729 78.5
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 3.2e-295 1018.1 686 81.8
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 4.2e-295 1017.7 689 83.2
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 2.1e-294 1015.4 690 81.6
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 2.7e-294 1015.0 691 81.8
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 3.6e-294 1014.6 692 80.9
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 4.7e-294 1014.2 686 81.5
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 6.1e-294 1013.8 689 81.3
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 1.0e-293 1013.1 689 81.9
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.8e-293 1012.3 686 81.5
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 2.3e-293 1011.9 690 81.6
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 8.8e-293 1010.0 690 81.6
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 5.7e-292 1007.3 693 80.1
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 7.5e-292 1006.9 657 83.0
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 3.1e-290 1001.5 691 80.9
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 4.5e-289 997.7 691 82.8
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 7.7e-289 996.9 687 80.9
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 1.3e-288 996.1 672 81.0
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 5.0e-288 994.2 687 80.1
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 5.0e-288 994.2 687 80.5
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 8.5e-288 993.4 690 80.3
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 5.5e-287 990.7 687 80.5
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.2e-286 989.6 680 82.4
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 2.7e-286 988.4 680 81.9
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 6.1e-286 987.3 693 79.5
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 8.0e-286 986.9 695 78.6
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.0e-285 986.5 687 79.0
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 1.4e-285 986.1 670 79.9
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 1.8e-285 985.7 691 78.7
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 1.8e-285 985.7 687 78.3
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 5.2e-285 984.2 683 79.2
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.2e-285 984.2 680 81.6
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 1.5e-284 982.6 669 80.6
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 2.2e-283 978.8 692 80.1
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 2.2e-283 978.8 684 78.9
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 4.9e-283 977.6 667 82.2
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 8.3e-283 976.9 692 77.9
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 8.3e-283 976.9 750 72.7
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 1.8e-282 975.7 668 81.7
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.8e-282 975.7 696 77.9
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.8e-282 975.7 750 72.7
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 2.4e-282 975.3 695 79.9
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 3.1e-282 974.9 690 80.7
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 4.1e-282 974.5 664 79.7
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 5.4e-282 974.2 690 77.1
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 2.0e-281 972.2 689 79.2
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 2.0e-281 972.2 678 79.6
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 4.5e-281 971.1 695 77.3
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 5.9e-281 970.7 657 80.4
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 7.7e-281 970.3 690 80.4
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 1.0e-280 969.9 664 79.7
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.3e-279 964.9 680 81.0
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 1.6e-278 962.6 662 79.9
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 1.8e-277 959.1 668 80.8
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 2.3e-277 958.7 689 79.8
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 5.2e-277 957.6 695 77.1
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 6.8e-277 957.2 668 81.0
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 1.2e-276 956.4 668 81.0
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.2e-276 956.4 729 76.1
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 1.5e-276 956.1 695 77.0
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 7.5e-276 953.7 683 77.2
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 2.2e-275 952.2 692 77.5
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 6.4e-275 950.7 694 78.1
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 8.3e-275 950.3 689 79.0
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.3e-272 943.0 686 78.7
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 2.8e-270 935.3 694 78.0
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 2.8e-270 935.3 694 78.0
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 9.8e-268 926.8 717 75.3
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 4.1e-266 921.4 657 79.5
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 8.6e-264 913.7 690 75.5
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 3.3e-263 911.8 694 73.8
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 5.6e-263 911.0 684 74.3
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 4.4e-260 901.4 698 73.8
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 4.9e-259 897.9 685 73.0
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 1.1e-258 896.7 1040 54.8
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 2.4e-258 895.6 687 73.1
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 7.8e-257 890.6 680 72.1
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.0e-252 875.9 739 68.7
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 1.4e-250 869.8 680 72.1
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 3.2e-250 868.6 644 76.2
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 5.1e-248 861.3 687 70.9
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 2.5e-247 859.0 672 72.0
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.8e-246 855.5 719 69.0
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 1.5e-244 849.7 655 72.8
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 4.4e-244 848.2 679 70.8
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 7.6e-244 847.4 725 68.0
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 9.9e-244 847.0 674 71.1
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 1.1e-242 843.6 581 80.9
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 1.9e-242 842.8 630 75.2
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 4.2e-242 841.6 676 70.9
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 9.6e-239 830.5 657 71.1
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 2.0e-236 822.8 689 67.6
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 5.8e-236 821.2 744 65.5
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.2e-235 819.3 663 69.5
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 1.6e-230 803.1 652 69.6
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 4.0e-229 798.5 545 82.4
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 4.5e-212 741.9 707 64.8
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 3.2e-210 735.7 650 64.5
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 7.4e-207 724.5 651 62.4
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 6.3e-206 721.5 667 61.2
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.0e-200 704.1 651 62.4
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 7.7e-164 581.6 428 79.2
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 1.3e-163 580.9 714 49.6
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 9.8e-159 564.7 405 79.3
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 6.6e-147 525.4 370 77.6
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.7e-129 466.1 350 71.1
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 6.6e-123 445.7 569 49.7
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 7.9e-108 395.6 422 61.1
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 8.2e-89 332.4 505 46.9
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 5.0e-86 323.2 521 46.1
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 3.9e-75 287.0 714 31.2
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 8.8e-75 285.8 267 63.7
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 6.8e-51 206.5 185 64.9
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 2.6e-50 204.5 566 34.1
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.9e-45 188.3 153 70.6
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 3.3e-45 187.6 133 73.7
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 8.0e-44 183.0 119 79.8
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 6.8e-43 179.9 782 29.4
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.3e-37 161.0 94 85.1
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 8.6e-30 136.3 608 26.5
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 5.8e-26 123.6 92 76.1
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 7.1e-24 116.7 667 22.8
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 4.4e-18 97.4 71 73.2
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 7.6e-18 96.7 109 61.5
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 3.0e-14 84.7 690 22.3
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 1.9e-13 82.0 82 62.2
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 1.4e-11 75.9 43 79.1
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 4.0e-11 74.3 82 59.8
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 4.6e-07 60.8 199 31.2
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 1.0e-06 59.7 51 58.8


User provided reference genes

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