Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 2.1e-303 1045.0 588 100.0
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 2.2e-175 619.8 603 60.5
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 1.3e-172 610.5 605 59.2
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 5.4e-166 588.6 615 57.6
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 2.3e-164 583.2 638 59.1
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 1.9e-163 580.1 635 55.1
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 8.1e-162 574.7 667 57.4
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 8.1e-162 574.7 667 57.4
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 1.8e-161 573.5 611 62.7
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 4.0e-161 572.4 611 57.8
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 1.8e-153 547.0 597 59.8
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 1.2e-149 534.3 656 51.2
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 1.9e-147 526.9 657 51.0
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 3.3e-147 526.2 636 47.5
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 8.1e-146 521.5 650 49.2
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 3.1e-145 519.6 634 49.8
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 2.6e-144 516.5 641 48.2
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 4.9e-143 512.3 617 48.1
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 2.3e-140 503.4 634 46.7
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.3e-138 497.7 634 46.2
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.3e-138 497.7 634 46.5
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 1.6e-138 497.3 659 47.2
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 1.1e-137 494.6 651 47.0
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.4e-137 494.2 640 47.0
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 2.0e-136 490.3 643 47.0
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.5e-136 489.2 646 47.1
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 4.5e-136 489.2 642 47.2
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 5.8e-136 488.8 650 46.8
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 2.5e-134 483.4 647 45.3
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 4.2e-134 482.6 662 47.7
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 8.7e-132 474.9 638 46.7
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 8.7e-132 474.9 606 47.4
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 1.1e-131 474.6 621 46.5
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.3e-130 471.1 649 45.6
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.3e-130 471.1 641 45.7
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.4e-129 467.6 642 47.2
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 1.4e-129 467.6 641 47.1
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 6.9e-129 465.3 637 47.6
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 1.2e-128 464.5 641 49.1
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 2.6e-128 463.4 678 49.9
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.9e-127 459.9 638 45.5
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 3.8e-127 459.5 645 45.1
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 6.5e-127 458.8 642 45.2
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 3.9e-124 449.5 636 45.3
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 4.3e-123 446.0 657 43.2
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 4.1e-121 439.5 636 46.4
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 2.0e-120 437.2 704 46.0
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.4e-120 436.4 704 45.6
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.3e-119 434.5 609 44.7
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.3e-119 434.5 613 46.7
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 1.7e-119 434.1 637 45.2
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 2.9e-119 433.3 619 44.6
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 1.1e-118 431.4 643 43.4
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 1.1e-118 431.4 656 43.8
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 5.5e-118 429.1 648 42.3
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 2.7e-117 426.8 640 45.0
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.4e-116 424.5 605 45.0
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.5e-115 421.0 649 41.4
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 3.3e-115 419.9 653 43.8
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 4.3e-115 419.5 649 41.3
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 4.3e-115 419.5 649 41.6
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 7.4e-115 418.7 643 42.5
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.1e-113 414.8 657 42.6
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 5.3e-113 412.5 624 48.1
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 5.3e-113 412.5 593 44.5
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 7.7e-112 408.7 609 42.4
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 3.8e-111 406.4 648 40.4
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 1.9e-110 404.1 655 42.6
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 1.0e-108 398.3 642 41.4
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.4e-108 397.9 605 42.0
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.4e-108 397.9 590 44.2
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 1.4e-108 397.9 627 45.1
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 5.1e-108 396.0 648 40.4
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 1.5e-107 394.4 497 47.5
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 2.6e-107 393.7 633 42.3
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 1.7e-106 391.0 650 39.8
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 6.3e-106 389.0 663 41.2
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 1.4e-105 387.9 551 45.2
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.8e-105 387.5 608 45.4
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 2.4e-105 387.1 637 40.0
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 3.1e-105 386.7 621 42.7
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 9.1e-105 385.2 644 39.8
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 1.2e-104 384.8 647 39.3
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 2.0e-104 384.0 598 42.1
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 4.5e-104 382.9 650 44.9
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 5.9e-104 382.5 634 38.2
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 7.7e-104 382.1 610 40.7
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 4.2e-102 376.3 648 40.7
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 7.2e-102 375.6 633 40.9
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 1.6e-101 374.4 627 42.7
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 8.0e-101 372.1 475 50.9
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 9.1e-97 358.6 651 38.1
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 9.1e-97 358.6 651 38.1
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 1.3e-95 354.8 656 36.9
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 4.2e-94 349.7 656 36.4
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 2.8e-90 337.0 626 43.5
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.3e-87 328.2 438 47.3
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 1.5e-83 314.7 450 44.2
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 4.4e-83 313.2 635 37.3
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 8.0e-77 292.4 680 34.9
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 6.8e-76 289.3 595 36.1
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 3.2e-73 280.4 243 62.1
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 7.5e-67 259.2 409 41.3
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 6.4e-66 256.1 555 33.9
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.7e-63 248.1 546 35.9
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.2e-56 225.3 358 41.6
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 5.1e-55 219.9 264 51.1
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.2e-48 198.7 297 41.8
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 1.6e-32 145.2 527 28.1
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.1e-30 139.0 113 59.3
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 7.4e-30 136.3 498 27.1
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 1.4e-28 132.1 117 54.7
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 3.1e-28 131.0 128 57.0
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 5.3e-28 130.2 259 34.0
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.5e-27 128.6 138 53.6
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 4.5e-27 127.1 312 33.7
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.3e-26 125.6 72 76.4
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.2e-26 124.8 98 61.2
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.9e-26 124.4 144 47.9
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.5e-22 112.1 174 42.0
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 1.1e-20 105.9 503 23.9
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 7.6e-19 99.8 178 36.5
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.0e-18 99.4 93 52.7
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 2.9e-18 97.8 590 22.5
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 5.5e-17 93.6 206 34.0
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 3.5e-16 90.9 70 62.9
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 3.9e-15 87.4 132 40.2
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 3.9e-15 87.4 195 37.4
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.9e-10 71.2 122 41.8
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.7e-08 64.7 126 36.5
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 4.6e-08 63.9 66 43.9
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 6.1e-08 63.5 130 38.5
Glyma.11G112400 Glycine max HOM05D005482 ORTHO05D006502 6.1e-08 63.5 58 69.0
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 1.3e-07 62.4 87 41.4
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.3e-07 61.6 66 43.9
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 3.0e-07 61.2 296 25.0
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 7.4e-06 56.6 62 51.6


User provided reference genes

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