Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0005939 Lotus japonicus HOM05D006961 ORTHO05D008809 3.1e-96 355.1 179 100.0
Medtr5g043580 Medicago truncatula HOM05D006961 ORTHO05D008809 2.3e-67 259.2 176 76.7
TPR.G24476 Trifolium pratense HOM05D006961 ORTHO05D008809 3.9e-67 258.5 176 76.7
arahy.Tifrunner.gnm1.ann1.TP0XC6 Arachis hypogaea HOM05D006961 ORTHO05D008809 1.9e-66 256.1 180 73.9
Ca_04910_v3 Cicer arietinum L. HOM05D006961 ORTHO05D008809 1.9e-66 256.1 177 75.7
arahy.Tifrunner.gnm1.ann1.T2VQ83 Arachis hypogaea HOM05D006961 ORTHO05D008809 5.6e-66 254.6 179 73.7
Glyma.01G055400 Glycine max HOM05D006961 ORTHO05D008809 2.1e-65 252.7 185 70.8
Glyma.02G113800 Glycine max HOM05D006961 ORTHO05D008809 6.2e-65 251.1 184 71.2
Psat2g128160 Pisum sativum HOM05D006961 ORTHO05D008809 8.1e-65 250.8 176 75.0
VMungo1215G1627 Vigna mungo HOM05D006961 ORTHO05D008809 1.1e-61 240.4 177 71.8
Lalb_Chr17g0341001 Lupinus albus HOM05D006961 ORTHO05D008809 6.7e-59 231.1 178 69.7
Potri.010G161400 Populus trichocarpa HOM05D006961 ORTHO05D008809 6.7e-51 204.5 153 66.0
TWI75G1056 Tripterygium wilfordii HOM05D006961 ORTHO05D008809 6.7e-51 204.5 183 60.7
TAR622G0866 Trochodendron aralioides HOM05D006961 ORTHO05D008809 2.5e-50 202.6 157 66.2
CiPaw.06G090400 Carya illinoinensis HOM05D006961 ORTHO05D008809 3.3e-50 202.2 173 61.3
Haze_11979 Corylus avellana HOM05D006961 ORTHO05D004702 2.2e-49 199.5 170 62.4
QL03p070935 Quercus lobata HOM05D006961 ORTHO05D008809 1.1e-48 197.2 138 68.8
GSVIVG01012179001 Vitis vinifera HOM05D006961 ORTHO05D008809 1.1e-48 197.2 163 60.1
MSTRG.7764 Avicennia marina HOM05D006961 ORTHO05D008809 1.8e-48 196.4 174 58.0
Cfa008905 Carpinus fangiana HOM05D006961 ORTHO05D008809 1.8e-48 196.4 163 62.6
Eucgr.G02462 Eucalyptus grandis HOM05D006961 ORTHO05D008809 3.1e-48 195.7 123 75.6
SGA_v2.0_scaffold16G07754 Striga asiatica HOM05D006961 ORTHO05D008809 3.1e-48 195.7 119 76.5
ClCG09G020750 Citrullus lanatus HOM05D006961 ORTHO05D008809 4.1e-48 195.3 176 58.0
PGR119G1669 Punica granatum HOM05D006961 ORTHO05D008809 5.3e-48 194.9 137 70.1
unitig_22.g6499 Utricularia gibba HOM05D006961 ORTHO05D008809 5.3e-48 194.9 155 64.5
MELO3C002920.2 Cucumis melo HOM05D006961 ORTHO05D008809 2.6e-47 192.6 142 69.0
CsaV3_5G025620 Cucumis sativus L. HOM05D006961 ORTHO05D008809 3.4e-47 192.2 142 69.7
Manes.05G107700 Manihot esculenta HOM05D006961 ORTHO05D008809 3.4e-47 192.2 151 66.9
CANSAT64G0471 Cannabis sativa HOM05D006961 ORTHO05D008809 5.9e-47 191.4 175 63.4
Nn3g17372 Nelumbo nucifera HOM05D006961 ORTHO05D008809 1.0e-46 190.7 129 72.9
RcHm_v2.0_Chr4g0438851 Rosa chinensis HOM05D006961 ORTHO05D008809 5.0e-46 188.3 124 72.6
SalBow2G3426 Salvia bowleyana HOM05D006961 ORTHO05D008809 5.0e-46 188.3 125 73.6
Ciclev10032810m.g Citrus clementina HOM05D006961 ORTHO05D008809 6.5e-46 188.0 163 62.0
CSS0004568 Camellia sinensis var. sinensis HOM05D006961 ORTHO05D008809 8.5e-46 187.6 125 75.2
Peaxi162Scf00314g00025 Petunia axillaris HOM05D006961 ORTHO05D008809 1.1e-45 187.2 138 67.4
Hma1.2p1_0357F.1_g134450 Hydrangea macrophylla HOM05D006961 ORTHO05D008809 1.4e-45 186.8 126 69.8
Aqoxy3G00448 Aquilegia oxysepala HOM05D006961 ORTHO05D008809 2.5e-45 186.0 128 70.3
Prupe.1G282200 Prunus persica HOM05D006961 ORTHO05D008809 2.5e-45 186.0 133 68.4
Thecc.02G336300 Theobroma cacao HOM05D006961 ORTHO05D008809 2.5e-45 186.0 176 60.2
COL.COLO4_27931 Corchorus olitorius HOM05D006961 ORTHO05D008809 3.2e-45 185.7 132 70.5
FvH4_4g30480 Fragaria vesca HOM05D006961 ORTHO05D008809 3.2e-45 185.7 124 71.0
CAN.G1340.11 Capsicum annuum HOM05D006961 ORTHO05D008809 4.2e-45 185.3 137 66.4
FAN07G0372 Fragaria x ananassa HOM05D006961 ORTHO05D008809 4.2e-45 185.3 124 70.2
FAN17G2308 Fragaria x ananassa HOM05D006961 ORTHO05D008809 4.2e-45 185.3 124 70.2
Actinidia19920 Actinidia chinensis HOM05D006961 ORTHO05D008809 5.5e-45 184.9 124 74.2
MBI16_g15564_MAGBIO Magnolia biondii HOM05D006961 ORTHO05D008809 5.5e-45 184.9 181 55.2
Duzib268G0330 Durio zibethinus HOM05D006961 ORTHO05D008809 7.2e-45 184.5 173 58.4
PGSC0003DMG400028327 Solanum tuberosum HOM05D006961 ORTHO05D008809 7.2e-45 184.5 156 60.9
THA.LOC104824066 Tarenaya hassleriana HOM05D006961 ORTHO05D008809 7.2e-45 184.5 139 69.1
Atru.chr11.1688 Acer truncatum HOM05D006961 ORTHO05D008809 9.4e-45 184.1 161 59.6
FAN22G0366 Fragaria x ananassa HOM05D006961 ORTHO05D008809 9.4e-45 184.1 124 70.2
Dinv34116 Davidia involucrata HOM05D006961 ORTHO05D008809 1.2e-44 183.7 134 70.1
Gohir.D05G306100 Gossypium hirsutum HOM05D006961 ORTHO05D008809 3.6e-44 182.2 130 67.7
vmacro01328 Vaccinium macrocarpon HOM05D006961 ORTHO05D008809 4.6e-44 181.8 125 73.6
Gohir.A05G306100 Gossypium hirsutum HOM05D006961 ORTHO05D008809 6.1e-44 181.4 172 56.4
Solyc05g012600.3 Solanum lycopersicum HOM05D006961 ORTHO05D008809 6.1e-44 181.4 153 59.5
Nitab4.5_0000334g0230 Nicotiana tabacum HOM05D006961 ORTHO05D008809 7.9e-44 181.0 184 55.4
Sed0005182 Sechium edule HOM05D006961 ORTHO05D008809 1.0e-43 180.6 133 69.9
Sopen05g007430 Solanum pennellii HOM05D006961 ORTHO05D008809 1.0e-43 180.6 157 58.0
Migut.L01221 Erythranthe guttata HOM05D006961 ORTHO05D008809 2.3e-43 179.5 139 64.7
Ah.03g139190 Amaranthus hybridus HOM05D006961 ORTHO05D008809 1.1e-42 177.2 182 53.8
MD13G1065900 Malus domestica HOM05D006961 ORTHO05D008809 1.5e-42 176.8 170 58.2
AUR62007955 Chenopodium quinoa HOM05D006961 ORTHO05D008809 2.0e-42 176.4 180 53.3
Rhsim12G0076500 Rhododendron simsii HOM05D006961 ORTHO05D008809 2.0e-42 176.4 137 67.2
HPP92_023640 Vanilla planifolia HOM05D006961 ORTHO05D008809 2.0e-42 176.4 163 54.0
Lsat_1_v5_gn_4_10260 Lactuca sativa HOM05D006961 ORTHO05D008809 4.3e-42 175.3 138 63.0
MD16G1064700 Malus domestica HOM05D006961 ORTHO05D008809 5.7e-42 174.9 120 72.5
CDE07G0364 Ceratophyllum demersum HOM05D006961 ORTHO05D008809 7.4e-42 174.5 126 69.0
ECA234G0986 Erigeron canadensis HOM05D006961 ORTHO05D008809 9.7e-42 174.1 119 68.9
HanXRQChr12g0379241 Helianthus annuus HOM05D006961 ORTHO05D008809 1.3e-41 173.7 172 55.2
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.7e-41 173.3 137 65.0
PSO478G0730 Papaver somniferum HOM05D006961 ORTHO05D008809 2.2e-41 172.9 131 64.1
Oeu015341.2 Olea europaea HOM05D006961 ORTHO05D008809 2.8e-41 172.6 165 55.2
PSO017G3353 Papaver somniferum HOM05D006961 ORTHO05D008809 2.8e-41 172.6 131 64.9
Cc11_g12360 Coffea canephora HOM05D006961 ORTHO05D008809 4.8e-41 171.8 116 72.4
AUR62003136 Chenopodium quinoa HOM05D006961 ORTHO05D008809 1.1e-40 170.6 137 59.1
DCAR_027451 Daucus carota HOM05D006961 ORTHO05D008809 4.1e-40 168.7 133 64.7
ATR0111G017 Amborella trichopoda HOM05D006961 ORTHO05D008809 5.3e-40 168.3 125 63.2
Hund05862 Selenicereus undatus HOM05D006961 ORTHO05D008809 5.3e-40 168.3 173 54.9
Cpa.g.sc1.93 Carica papaya HOM05D006961 ORTHO05D008809 6.9e-40 167.9 179 55.3
Carub.0005s0238 Capsella rubella HOM05D006961 ORTHO05D008809 1.2e-39 167.2 174 54.0
AT2G03420 Arabidopsis thaliana HOM05D006961 ORTHO05D008809 2.0e-39 166.4 173 52.6
BcaB07g30670 Brassica carinata HOM05D006961 ORTHO05D008809 2.6e-39 166.0 175 50.9
BcaC04g21488 Brassica carinata HOM05D006961 ORTHO05D008809 3.4e-39 165.6 173 50.3
C09p31220 Brassica napus HOM05D006961 ORTHO05D008809 3.4e-39 165.6 173 50.3
BolC9t55978H Brassica oleracea HOM05D006961 ORTHO05D008809 3.4e-39 165.6 173 50.3
EL10Ac6g14957 Beta vulgaris HOM05D006961 ORTHO05D008809 4.5e-39 165.2 167 53.9
AL5G13170 Arabidopsis lyrata HOM05D006961 ORTHO05D008809 5.9e-39 164.9 137 65.0
BraA09t38036Z Brassica rapa HOM05D006961 ORTHO05D008809 5.9e-39 164.9 173 50.3
A09p24430 Brassica napus HOM05D006961 ORTHO05D008809 7.7e-39 164.5 157 53.5
CARHR145760 Cardamine hirsuta HOM05D006961 ORTHO05D008809 7.7e-39 164.5 136 63.2
Thhalv10005024m.g Eutrema salsugineum HOM05D006961 ORTHO05D008809 2.9e-38 162.5 173 49.7
CDE04G0363 Ceratophyllum demersum HOM05D006961 ORTHO05D008809 5.0e-38 161.8 116 69.8
Sp2g14330 Schrenkiella parvula HOM05D006961 ORTHO05D008809 1.4e-37 160.2 169 50.3
A02p33440 Brassica napus HOM05D006961 ORTHO05D008809 5.5e-37 158.3 176 50.6
Lj3A1032T68 Lonicera japonica HOM05D006961 ORTHO05D008809 9.4e-37 157.5 116 66.4
Sc04g0007750 Simmondsia chinensis HOM05D006961 ORTHO05D008809 9.4e-37 157.5 99 74.7
SEGI_13566 Sequoiadendron giganteum HOM05D006961 ORTHO05D008809 3.9e-35 152.1 117 63.2
Zm00001eb400470 Zea mays HOM05D006961 ORTHO05D008809 2.0e-34 149.8 134 56.0
HPP92_023624 Vanilla planifolia HOM05D006961 ORTHO05D008809 2.2e-33 146.4 137 54.0
BcaC03g17213 Brassica carinata HOM05D006961 ORTHO05D008809 1.6e-28 130.2 149 50.3
C02p51430 Brassica napus HOM05D006961 ORTHO05D008809 1.6e-28 130.2 149 50.3
BolC2t11231H Brassica oleracea HOM05D006961 ORTHO05D008809 1.6e-28 130.2 149 50.3
Gorai.009G326100 Gossypium raimondii HOM05D006961 ORTHO05D008809 4.1e-24 115.5 131 54.2
Mapoly0047s0086 Marchantia polymorpha HOM05D006961 ORTHO05D008809 1.6e-23 113.6 126 45.2
Actinidia31945 Actinidia chinensis HOM05D006961 ORTHO05D008809 1.3e-22 110.5 90 68.9
Pp3c5_22460 Physcomitrium patens HOM05D006961 ORTHO05D008809 4.2e-21 105.5 119 45.4
AagrBONN_evm.TU.Sc2ySwM_228.3757 Anthoceros agrestis HOM05D006961 ORTHO05D008809 8.0e-20 101.3 120 45.0
Zm00001eb176890 Zea mays HOM05D006961 ORTHO05D008809 1.8e-19 100.1 81 59.3
SMO356G0726 Selaginella moellendorffii HOM05D006961 ORTHO05D008809 4.0e-19 99.0 111 47.7
SalBow2G3119 Salvia bowleyana HOM05D006961 ORTHO05D008809 3.1e-16 89.4 68 66.2
CBR_g50745 Chara braunii HOM05D006961 ORTHO05D008809 7.0e-16 88.2 113 42.5
FAN12G0580 Fragaria x ananassa HOM05D006961 ORTHO05D008809 2.7e-12 76.3 42 73.8
Os03g0210700 Oryza sativa ssp. japonica HOM05D006961 ORTHO05D008809 2.4e-08 63.2 42 61.9
Cre02.g114450 Chlamydomonas reinhardtii HOM05D006961 ORTHO05D008809 4.1e-08 62.4 112 39.3
arahy.Tifrunner.gnm1.ann1.U0I2TY Arachis hypogaea HOM05D008137 ORTHO05D010271 7.0e-08 61.6 117 39.3


User provided reference genes

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