Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 2.7e-263 911.4 439 100.0
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 3.0e-246 854.7 439 91.8
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 2.5e-240 835.1 433 90.3
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 9.4e-240 833.2 439 89.7
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 4.7e-239 830.9 439 88.2
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.4e-238 829.3 433 89.4
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 2.3e-238 828.6 433 89.4
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.4e-237 824.3 430 90.2
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.4e-237 824.3 430 90.2
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 5.7e-237 823.9 433 89.1
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 4.8e-236 820.8 439 87.5
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 1.4e-235 819.3 439 86.6
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 1.2e-234 816.2 436 86.9
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 1.6e-234 815.8 439 87.0
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 7.7e-234 813.5 439 86.8
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 5.5e-232 807.4 437 86.0
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 7.2e-232 807.0 438 85.2
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 4.7e-231 804.3 436 86.5
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 4.0e-230 801.2 451 84.0
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 7.5e-229 797.0 437 85.1
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 9.8e-229 796.6 437 85.4
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 6.3e-228 793.9 437 84.9
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 1.1e-227 793.1 437 84.7
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 3.1e-227 791.6 441 84.4
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 5.4e-227 790.8 439 84.3
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 5.4e-227 790.8 437 84.4
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 9.1e-227 790.0 437 84.9
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 1.6e-226 789.3 439 83.6
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 2.0e-226 788.9 437 83.5
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.7e-226 788.5 439 83.8
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.7e-226 788.5 431 85.2
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.7e-226 788.5 431 84.9
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.0e-225 786.6 431 84.9
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.3e-225 786.2 439 84.1
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 2.3e-225 785.4 431 84.9
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 6.6e-225 783.9 431 84.7
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 8.6e-225 783.5 437 82.8
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 5.5e-224 780.8 439 82.9
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 9.5e-224 780.0 439 83.1
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.2e-223 779.6 439 82.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 4.7e-223 777.7 431 83.8
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.4e-222 776.2 433 83.6
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.8e-222 775.8 439 82.7
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 3.0e-222 775.0 439 82.0
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 5.7e-221 770.8 439 82.0
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 2.2e-220 768.8 439 81.1
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 4.9e-220 767.7 437 82.6
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 4.9e-220 767.7 433 82.7
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 6.3e-220 767.3 431 83.3
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 1.8e-219 765.8 437 81.5
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 5.9e-218 760.8 439 82.0
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 5.9e-218 760.8 428 83.4
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 7.8e-218 760.4 437 79.9
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.3e-217 759.6 435 80.2
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.1e-216 756.5 437 80.3
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 2.5e-216 755.4 495 72.5
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 5.6e-216 754.2 431 80.7
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 1.2e-215 753.1 431 81.2
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 2.1e-215 752.3 436 79.6
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 2.8e-215 751.9 437 79.4
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 8.0e-215 750.4 436 79.6
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 1.0e-214 750.0 434 79.7
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 1.0e-214 750.0 434 79.7
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 1.8e-214 749.2 434 79.5
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.3e-214 748.8 439 79.7
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 2.3e-214 748.8 469 75.5
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 4.0e-214 748.0 436 79.8
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 5.2e-214 747.7 432 80.1
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 6.8e-214 747.3 434 79.3
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 8.9e-214 746.9 439 79.3
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 8.9e-214 746.9 437 79.2
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 8.9e-214 746.9 445 79.1
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.2e-213 746.5 437 78.9
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 2.0e-213 745.7 429 79.3
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 2.6e-213 745.3 436 79.4
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 2.6e-213 745.3 419 83.5
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 1.3e-212 743.0 435 78.2
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 2.2e-212 742.3 430 80.0
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 2.9e-212 741.9 430 79.3
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 8.3e-212 740.3 437 79.2
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 7.0e-211 737.3 434 77.9
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.0e-209 733.4 508 70.7
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 2.3e-209 732.3 445 77.3
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.5e-208 729.6 431 78.0
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 2.5e-208 728.8 420 81.2
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 9.5e-208 726.9 412 82.8
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.1e-207 725.7 523 69.4
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 3.0e-201 705.3 398 82.2
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 8.6e-201 703.7 391 83.9
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 4.3e-200 701.4 430 75.6
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 4.7e-199 698.0 407 79.4
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.8e-198 696.0 430 74.9
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 4.0e-198 694.9 431 75.2
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 5.8e-197 691.0 427 75.6
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 2.7e-194 682.2 439 72.9
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.1e-192 676.8 430 74.0
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 7.3e-192 674.1 441 71.4
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 6.2e-191 671.0 431 73.3
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.6e-189 665.6 431 71.9
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 1.1e-187 660.2 427 71.9
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.4e-187 659.8 426 72.1
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 3.5e-186 655.2 439 68.1
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.6e-183 646.4 436 72.7
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 3.6e-183 645.2 340 89.1
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.4e-182 643.3 439 67.7
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 2.4e-179 632.5 339 88.2
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 8.7e-177 624.0 427 68.9
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.8e-175 618.2 436 64.7
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.4e-173 612.1 438 64.4
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 3.4e-173 612.1 341 83.3
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 9.9e-173 610.5 329 85.7
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 4.2e-171 605.1 390 74.4
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 2.5e-168 595.9 436 63.1
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 4.9e-164 581.6 354 77.7
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.9e-163 579.7 443 60.5
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 4.2e-163 578.6 443 60.3
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 9.3e-163 577.4 440 66.1
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 4.3e-160 568.5 426 60.6
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 6.5e-156 554.7 439 60.4
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 8.7e-153 544.3 287 87.8
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.3e-144 515.4 428 58.4
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 8.2e-143 511.1 335 71.3
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 5.3e-142 508.4 349 69.1
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 9.4e-139 497.7 382 64.7
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 3.6e-130 469.2 432 52.8
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 4.4e-120 435.6 243 85.6
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 1.0e-116 424.5 352 61.9
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.9e-107 393.7 224 81.7
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 1.2e-98 364.4 228 76.8
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.7e-79 299.7 157 89.8
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 3.5e-77 293.1 192 69.8
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.4e-73 280.4 151 84.1
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 3.5e-69 266.5 197 68.0
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 6.9e-65 252.3 145 82.1
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.9e-62 244.2 134 87.3
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.5e-59 233.8 235 54.9
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 9.6e-51 205.3 112 84.8
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 5.8e-48 196.1 107 78.5
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 1.0e-39 168.7 137 62.0
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.0e-39 166.4 93 84.9
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.2e-38 163.7 88 85.2
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 5.7e-35 152.9 165 50.9
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.6e-34 151.4 82 87.8
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 9.0e-33 145.6 204 39.7
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.0e-24 117.9 78 71.8
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 1.1e-22 112.1 67 71.6
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.9e-22 111.3 242 33.5
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 1.2e-21 108.6 72 66.7
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 3.6e-21 107.1 57 77.2
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 3.9e-20 103.6 62 77.4
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 6.5e-15 86.3 121 44.6
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 5.5e-14 83.2 36 94.4
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 1.6e-13 81.6 38 86.8
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 1.4e-09 68.6 81 45.7
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 1.6e-08 65.1 35 82.9
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 1.0e-07 62.4 69 52.2
Os01g0560000 Oryza sativa ssp. japonica HOM05D000617 ORTHO05D000478 1.1e-06 58.9 248 25.8
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 5.5e-06 56.6 35 65.7


User provided reference genes

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