Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0005784 Lotus japonicus HOM05D003167 ORTHO05D003929 1.3e-143 513.1 255 100.0
Lj1g0005916 Lotus japonicus HOM05D003167 ORTHO05D003929 5.7e-80 301.6 315 56.2
Ca_08942_v3 Cicer arietinum L. HOM05D003167 ORTHO05D003929 2.0e-77 293.1 315 54.6
Psat3g037760 Pisum sativum HOM05D003167 ORTHO05D003929 1.3e-76 290.4 315 53.7
Phvul.001G184000 Phaseolus vulgaris HOM05D003167 ORTHO05D003929 1.9e-75 286.6 318 52.5
VMungo1383G0302 Vigna mungo HOM05D003167 ORTHO05D003929 3.3e-75 285.8 315 52.4
Glyma.19G188800 Glycine max HOM05D003167 ORTHO05D003929 9.5e-75 284.3 315 52.1
Glyma.03G188600 Glycine max HOM05D003167 ORTHO05D003929 1.2e-74 283.9 315 52.1
Medtr7g102700 Medicago truncatula HOM05D003167 ORTHO05D003929 1.2e-74 283.9 320 52.2
TPR.G31678 Trifolium pratense HOM05D003167 ORTHO05D003929 1.8e-73 280.0 315 51.7
Glyma.13G148300 Glycine max HOM05D003167 ORTHO05D003929 3.0e-73 279.3 315 51.4
arahy.Tifrunner.gnm1.ann1.P92TZX Arachis hypogaea HOM05D003167 ORTHO05D003929 6.8e-73 278.1 314 51.9
arahy.Tifrunner.gnm1.ann1.WY8M22 Arachis hypogaea HOM05D003167 ORTHO05D003929 6.8e-73 278.1 314 51.9
Lalb_Chr25g0288761 Lupinus albus HOM05D003167 ORTHO05D003929 2.7e-69 266.2 321 50.5
Medtr1g061860 Medicago truncatula HOM05D003167 ORTHO05D003929 7.8e-69 264.6 318 49.1
GSVIVG01033725001 Vitis vinifera HOM05D003167 ORTHO05D003929 8.6e-68 261.2 314 48.1
Psat6g078080 Pisum sativum HOM05D003167 ORTHO05D003929 1.1e-67 260.8 319 49.5
TPR.G27088 Trifolium pratense HOM05D003167 ORTHO05D003929 3.3e-67 259.2 315 48.3
VMungo0720G2588 Vigna mungo HOM05D003167 ORTHO05D003929 4.3e-67 258.8 317 49.2
Thecc.05G076300 Theobroma cacao HOM05D003167 ORTHO05D003929 7.3e-67 258.1 314 47.8
Hma1.2p1_0564F.1_g179130 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 2.8e-66 256.1 313 48.6
CANSAT80G1311 Cannabis sativa HOM05D003167 ORTHO05D003929 4.7e-66 255.4 318 46.9
Lalb_Chr21g0315291 Lupinus albus HOM05D003167 ORTHO05D003929 1.4e-65 253.8 313 49.2
Duzib093G1992 Durio zibethinus HOM05D003167 ORTHO05D003929 1.8e-65 253.4 316 48.4
RcHm_v2.0_Chr3g0471451 Rosa chinensis HOM05D003167 ORTHO05D003929 4.0e-65 252.3 317 46.7
Gohir.D04G106400 Gossypium hirsutum HOM05D003167 ORTHO05D003929 5.2e-65 251.9 312 47.1
Cfa016494 Carpinus fangiana HOM05D003167 ORTHO05D003929 1.5e-64 250.4 314 47.1
Eucgr.K02416 Eucalyptus grandis HOM05D003167 ORTHO05D003929 2.0e-64 250.0 312 46.5
DCAR_020795 Daucus carota HOM05D003167 ORTHO05D003929 3.4e-64 249.2 321 45.2
Ciclev10011207m.g Citrus clementina HOM05D003167 ORTHO05D003929 5.8e-64 248.4 309 46.6
Gorai.009G410400 Gossypium raimondii HOM05D003167 ORTHO05D003929 7.5e-64 248.1 312 46.8
Cc10_g12700 Coffea canephora HOM05D003167 ORTHO05D003929 9.8e-64 247.7 311 46.9
Prupe.7G122300 Prunus persica HOM05D003167 ORTHO05D003929 9.8e-64 247.7 317 47.0
Rhsim03G0085500 Rhododendron simsii HOM05D003167 ORTHO05D003929 2.2e-63 246.5 313 47.0
vmacro07353 Vaccinium macrocarpon HOM05D003167 ORTHO05D003929 2.2e-63 246.5 315 47.6
Aqoxy1G01021 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 4.9e-63 245.4 314 45.5
Gohir.A04G067800 Gossypium hirsutum HOM05D003167 ORTHO05D003929 4.9e-63 245.4 311 45.7
HanXRQChr11g0325191 Helianthus annuus HOM05D003167 ORTHO05D003929 1.1e-62 244.2 311 44.4
Actinidia26630 Actinidia chinensis HOM05D003167 ORTHO05D003929 1.4e-62 243.8 315 47.0
Sc01g0003900 Simmondsia chinensis HOM05D003167 ORTHO05D003929 1.4e-62 243.8 319 45.5
FAN02G2003 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.4e-62 243.0 312 46.8
FAN14G2907 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.4e-62 243.0 316 45.6
Hund04098 Selenicereus undatus HOM05D003167 ORTHO05D003929 2.4e-62 243.0 313 48.2
Cpa.g.sc5.120 Carica papaya HOM05D003167 ORTHO05D003929 4.1e-62 242.3 312 46.5
CiPaw.10G002600 Carya illinoinensis HOM05D003167 ORTHO05D003929 5.4e-62 241.9 310 46.5
Haze_19497 Corylus avellana HOM05D003167 ORTHO05D003929 5.4e-62 241.9 314 45.9
FvH4_6g17312 Fragaria vesca HOM05D003167 ORTHO05D003929 7.0e-62 241.5 316 45.3
ECA238G2918 Erigeron canadensis HOM05D003167 ORTHO05D003929 1.6e-61 240.4 316 43.7
MD14G1096200 Malus domestica HOM05D003167 ORTHO05D003929 1.6e-61 240.4 310 45.8
EL10Ac7g16722 Beta vulgaris HOM05D003167 ORTHO05D003929 3.5e-61 239.2 314 45.9
TAR623G0013 Trochodendron aralioides HOM05D003167 ORTHO05D003929 3.5e-61 239.2 314 44.9
Manes.08G017200 Manihot esculenta HOM05D003167 ORTHO05D003929 4.6e-61 238.8 310 46.8
COL.COLO4_22264 Corchorus olitorius HOM05D003167 ORTHO05D003929 6.0e-61 238.4 314 44.3
Lj3C1008T14 Lonicera japonica HOM05D003167 ORTHO05D003929 6.0e-61 238.4 325 46.2
SalBow8G1467 Salvia bowleyana HOM05D003167 ORTHO05D003929 6.0e-61 238.4 314 45.9
SalBow8G3947 Salvia bowleyana HOM05D003167 ORTHO05D003929 6.0e-61 238.4 314 45.9
Sabra06G0093300 Salix brachista HOM05D003167 ORTHO05D003929 1.7e-60 236.9 314 45.2
CSS0014862 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 3.0e-60 236.1 311 46.0
CSS0043785 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 3.0e-60 236.1 311 46.0
THA.LOC104816364 Tarenaya hassleriana HOM05D003167 ORTHO05D003929 3.9e-60 235.7 319 43.6
PGR142G4079 Punica granatum HOM05D003167 ORTHO05D003929 5.0e-60 235.3 313 43.5
Peaxi162Scf00732g00028 Petunia axillaris HOM05D003167 ORTHO05D003929 6.6e-60 235.0 313 44.7
Potri.006G118700 Populus trichocarpa HOM05D003167 ORTHO05D003929 8.6e-60 234.6 311 45.3
QL07p041296 Quercus lobata HOM05D003167 ORTHO05D003929 1.1e-59 234.2 310 44.5
Dinv35839 Davidia involucrata HOM05D003167 ORTHO05D003929 1.5e-59 233.8 311 45.0
Migut.G00710 Erythranthe guttata HOM05D003167 ORTHO05D003929 5.6e-59 231.9 319 45.8
CsaV3_3G036590 Cucumis sativus L. HOM05D003167 ORTHO05D003929 7.3e-59 231.5 314 44.3
Aqoxy1G01022 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 1.2e-58 230.7 312 44.2
Aa31LG1G9100 Aethionema arabicum HOM05D003167 ORTHO05D003929 1.6e-58 230.3 316 43.4
Carub.0001s0306 Capsella rubella HOM05D003167 ORTHO05D003929 2.1e-58 229.9 321 43.0
MELO3C009413.2 Cucumis melo HOM05D003167 ORTHO05D003929 2.1e-58 229.9 359 40.7
MSTRG.21603 Avicennia marina HOM05D003167 ORTHO05D003929 2.8e-58 229.6 306 45.1
ClCG10G019590 Citrullus lanatus HOM05D003167 ORTHO05D003929 1.8e-57 226.9 314 43.9
AT1G03910 Arabidopsis thaliana HOM05D003167 ORTHO05D003929 2.3e-57 226.5 321 42.1
Zm00001eb061170 Zea mays HOM05D003167 ORTHO05D003929 2.3e-57 226.5 315 45.4
Lsat_1_v5_gn_2_23140 Lactuca sativa HOM05D003167 ORTHO05D003929 4.0e-57 225.7 324 42.0
BcaC05g24486 Brassica carinata HOM05D003167 ORTHO05D003929 5.2e-57 225.3 318 42.8
Sed0027110 Sechium edule HOM05D003167 ORTHO05D003929 5.2e-57 225.3 318 42.5
HPP92_017793 Vanilla planifolia HOM05D003167 ORTHO05D003929 5.2e-57 225.3 315 43.8
Atru.chr8.1695 Acer truncatum HOM05D003167 ORTHO05D003929 6.8e-57 224.9 316 44.3
TAR636G1269 Trochodendron aralioides HOM05D003167 ORTHO05D003929 8.9e-57 224.6 308 44.2
Cc00_g14960 Coffea canephora HOM05D003167 ORTHO05D003929 1.2e-56 224.2 290 46.6
Nitab4.5_0002027g0020 Nicotiana tabacum HOM05D003167 ORTHO05D003929 1.2e-56 224.2 321 42.4
AL1G13510 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 1.5e-56 223.8 321 41.7
Solyc10g085410.3 Solanum lycopersicum HOM05D003167 ORTHO05D003929 2.0e-56 223.4 322 41.9
Sopen10g034860 Solanum pennellii HOM05D003167 ORTHO05D003929 2.0e-56 223.4 322 41.9
BcaC07g42222 Brassica carinata HOM05D003167 ORTHO05D003929 2.6e-56 223.0 324 41.7
A09p68130 Brassica napus HOM05D003167 ORTHO05D003929 2.6e-56 223.0 324 41.4
BolC8t52784H Brassica oleracea HOM05D003167 ORTHO05D003929 2.6e-56 223.0 324 41.4
SGA_v2.0_scaffold312G48279 Striga asiatica HOM05D003167 ORTHO05D003929 2.6e-56 223.0 307 45.0
CAN.G738.3 Capsicum annuum HOM05D003167 ORTHO05D003929 3.4e-56 222.6 320 41.9
Thhalv10006994m.g Eutrema salsugineum HOM05D003167 ORTHO05D003929 5.8e-56 221.9 321 41.7
Sp1g02770 Schrenkiella parvula HOM05D003167 ORTHO05D003929 7.5e-56 221.5 321 41.7
PSO339G0841 Papaver somniferum HOM05D003167 ORTHO05D003929 9.8e-56 221.1 317 42.6
Thecc.06G013600 Theobroma cacao HOM05D003167 ORTHO05D003929 1.3e-55 220.7 295 47.1
C08p52570 Brassica napus HOM05D003167 ORTHO05D003929 4.9e-55 218.8 324 40.7
Peaxi162Scf01089g10011 Petunia axillaris HOM05D003167 ORTHO05D003929 4.9e-55 218.8 324 42.0
AUR62040188 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.4e-54 217.2 310 42.9
Lj8P306T56 Lonicera japonica HOM05D003167 ORTHO05D003929 2.4e-54 216.5 310 43.2
PGSC0003DMG400040194 Solanum tuberosum HOM05D003167 ORTHO05D003929 2.4e-54 216.5 322 40.7
AUR62042696 Chenopodium quinoa HOM05D003167 ORTHO05D003929 3.2e-54 216.1 310 42.9
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 4.1e-54 215.7 320 41.6
BolC5t29003H Brassica oleracea HOM05D003167 ORTHO05D003929 4.1e-54 215.7 320 41.6
AagrBONN_evm.TU.Sc2ySwM_344.2239 Anthoceros agrestis HOM05D003167 ORTHO05D003929 1.0e-52 211.1 319 41.4
FAN05G3544 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.3e-52 210.7 368 39.4
FAN05G3981 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.3e-52 210.7 368 39.4
SHI27742 Sapria himalayana HOM05D003167 ORTHO05D003929 1.7e-52 210.3 304 44.1
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 2.1e-50 203.4 317 39.1
Carub.0004s1866 Capsella rubella HOM05D003167 ORTHO05D003929 8.1e-50 201.4 298 40.3
BraA09t42148Z Brassica rapa HOM05D003167 ORTHO05D003929 1.1e-49 201.1 369 36.6
Mapoly0001s0156 Marchantia polymorpha HOM05D003167 ORTHO05D003929 4.0e-49 199.1 324 38.0
AUR62018820 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.0e-48 196.8 281 47.0
AL4G33010 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 7.6e-48 194.9 265 43.0
unitig_578.g16659 Utricularia gibba HOM05D003167 ORTHO05D003929 2.2e-47 193.4 305 41.0
ATR0724G050 Amborella trichopoda HOM05D003167 ORTHO05D003929 1.9e-46 190.3 274 41.6
CARHR131270 Cardamine hirsuta HOM05D003167 ORTHO05D003929 7.1e-46 188.3 221 48.4
AUR62007182 Chenopodium quinoa HOM05D003167 ORTHO05D003929 9.2e-46 188.0 282 45.4
COL.COLO4_17620 Corchorus olitorius HOM05D003167 ORTHO05D003929 3.5e-45 186.0 249 45.8
AUR62007183 Chenopodium quinoa HOM05D003167 ORTHO05D003929 6.0e-45 185.3 281 45.2
CBR_g4119 Chara braunii HOM05D003167 ORTHO05D003929 3.0e-44 183.0 321 35.8
SMO169G0108 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 3.0e-44 183.0 306 37.9
CDE04G1328 Ceratophyllum demersum HOM05D003167 ORTHO05D003929 3.9e-44 182.6 313 37.1
PSO210G0575 Papaver somniferum HOM05D003167 ORTHO05D003929 3.3e-43 179.5 300 37.3
Eucgr.D02277 Eucalyptus grandis HOM05D003167 ORTHO05D003929 8.1e-42 174.9 307 36.2
Pp3c27_420 Physcomitrium patens HOM05D003167 ORTHO05D003929 1.8e-41 173.7 321 36.4
FAN05G5009 Fragaria x ananassa HOM05D003167 ORTHO05D003929 4.0e-41 172.6 306 39.5
EL10Ac3g06890 Beta vulgaris HOM05D003167 ORTHO05D003929 1.2e-40 171.0 257 40.9
Atru.chr10.2405 Acer truncatum HOM05D003167 ORTHO05D003929 6.4e-39 165.2 205 47.3
MD12G1102100 Malus domestica HOM05D003167 ORTHO05D003929 6.4e-39 165.2 253 44.7
PGR083G2067 Punica granatum HOM05D003167 ORTHO05D003929 1.6e-37 160.6 248 39.5
FAN19G3088 Fragaria x ananassa HOM05D003167 ORTHO05D003929 8.7e-36 154.8 304 38.2
FAN26G0867 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.9e-35 153.7 301 38.2
FAN26G2184 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.9e-35 153.7 301 38.2
Cc04_g07780 Coffea canephora HOM05D003167 ORTHO05D003929 3.3e-35 152.9 240 40.4
RcHm_v2.0_Chr2g0092191 Rosa chinensis HOM05D003167 ORTHO05D003929 7.3e-35 151.8 305 36.7
FvH4_1g06450 Fragaria vesca HOM05D003167 ORTHO05D003929 1.3e-34 151.0 304 37.5
Os03g0800100 Oryza sativa ssp. japonica HOM05D003167 ORTHO05D003929 1.6e-34 150.6 148 50.7
Ah.15g091340 Amaranthus hybridus HOM05D003167 ORTHO05D003929 2.1e-34 150.2 241 40.2
FAN23G0551 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.1e-34 150.2 301 37.9
CARHR003250 Cardamine hirsuta HOM05D003167 ORTHO05D003929 3.1e-33 146.4 259 37.5
Aqoxy3G01485 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 2.6e-32 143.3 265 36.6
FAN28G1035 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.7e-31 140.6 306 36.3
Hma1.2p1_0033F.1_g020940 Hydrangea macrophylla HOM05D003167 ORTHO05D023710 8.4e-31 138.3 226 40.3
Thecc.08G192100 Theobroma cacao HOM05D003167 ORTHO05D003929 8.7e-28 128.3 161 48.4
SEGI_34935 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 1.1e-27 127.9 251 35.9
Hma1.2p1_2996F.1_g331470 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 4.3e-27 125.9 165 46.7
FAN09G3561 Fragaria x ananassa HOM05D003167 ORTHO05D030899 5.3e-25 119.0 300 36.0
Nitab4.5_0000883g0030 Nicotiana tabacum HOM05D003167 ORTHO05D023710 9.0e-25 118.2 212 37.3
AUR62022073 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.0e-24 117.1 205 39.5
AUR62022074 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.0e-24 117.1 205 39.5
CARHR131200 Cardamine hirsuta HOM05D003167 ORTHO05D003929 9.9e-24 114.8 126 47.6
SMO364G0524 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 4.9e-23 112.5 178 35.4
Oeu027192.1 Olea europaea HOM05D003167 ORTHO05D003929 9.3e-22 108.2 179 41.9
AUR62009153 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.1e-21 107.1 190 38.9
Zm00001eb017020 Zea mays HOM05D003167 ORTHO05D023710 9.6e-19 98.2 100 51.0
Atru.chr10.1911 Acer truncatum HOM05D003167 ORTHO05D003929 5.3e-17 92.4 73 56.2
Hma1.2p1_0033F.1_g020920 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 9.0e-17 91.7 84 58.3
Os04g0558200 Oryza sativa ssp. japonica HOM05D003167 ORTHO05D003929 5.8e-16 89.0 117 41.0
ECA232G4802 Erigeron canadensis HOM05D003167 ORTHO05D003929 1.0e-15 88.2 70 57.1
RcHm_v2.0_Chr3g0471601 Rosa chinensis HOM05D003167 ORTHO05D030899 1.3e-15 87.8 176 37.5
SEGI_24622 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 3.8e-15 86.3 66 60.6
Oeu005667.1 Olea europaea HOM05D003167 ORTHO05D003929 8.4e-15 85.1 68 55.9
Ah.15g091330 Amaranthus hybridus HOM05D003167 ORTHO05D003929 1.1e-14 84.7 71 57.7
CARHR003240 Cardamine hirsuta HOM05D003167 ORTHO05D003929 1.6e-13 80.9 66 56.1
ECA232G4074 Erigeron canadensis HOM05D003167 ORTHO05D003929 4.6e-13 79.3 92 46.7
Cfa022090 Carpinus fangiana HOM05D003167 ORTHO05D003929 6.7e-12 75.5 226 29.2
AT2G36815 Arabidopsis thaliana HOM05D003167 ORTHO05D023710 1.1e-11 74.7 82 50.0
SMO364G0478 Selaginella moellendorffii HOM05D003167 ORTHO05D379266 2.5e-11 73.6 157 33.1
Zm00001eb345920 Zea mays HOM05D003167 ORTHO05D023710 6.3e-10 68.9 79 49.4
Cc00_g14970 Coffea canephora HOM05D003167 ORTHO05D003929 1.1e-09 68.2 115 35.7
CAN.G1459.3 Capsicum annuum HOM05D003167 ORTHO05D003929 6.9e-09 65.5 72 47.2
Cre09.g398650 Chlamydomonas reinhardtii HOM05D003167 ORTHO05D003929 2.6e-08 63.5 217 27.6
SMO301G0016 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 2.9e-07 60.1 73 39.7
Ciclev10013400m.g Citrus clementina HOM05D003167 ORTHO05D151884 3.8e-07 59.7 137 35.0
VMungo0251G2561 Vigna mungo HOM05D003167 ORTHO05D435993 2.5e-06 57.0 42 64.3


User provided reference genes

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