Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 5.8e-164 580.9 304 100.0
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 1.7e-134 483.0 300 83.3
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 4.8e-134 481.5 301 83.1
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 9.1e-133 477.2 304 83.2
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 9.4e-130 467.2 304 79.6
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.6e-129 466.5 305 80.7
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 1.6e-129 466.5 307 80.5
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 3.9e-128 461.8 297 81.8
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 3.7e-126 455.3 306 79.7
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 3.5e-124 448.7 305 80.0
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 6.1e-121 438.0 300 78.0
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 8.0e-121 437.6 304 77.0
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 5.2e-120 434.9 304 72.7
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 9.1e-117 424.1 297 76.1
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.6e-116 423.3 297 75.8
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.6e-116 423.3 297 75.8
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 2.0e-116 422.9 297 73.4
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 2.7e-116 422.5 291 72.2
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.7e-116 422.5 297 75.8
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.7e-116 422.5 297 75.8
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 2.2e-115 419.5 300 75.7
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 3.8e-115 418.7 301 71.8
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 1.1e-114 417.2 289 76.5
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 5.5e-114 414.8 298 74.5
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 2.3e-112 409.5 303 70.0
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 3.0e-112 409.1 304 70.7
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 4.0e-112 408.7 293 71.3
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 5.2e-112 408.3 293 72.7
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 7.5e-111 404.4 298 72.5
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 1.7e-110 403.3 294 73.1
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 3.7e-110 402.1 298 71.5
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.7e-110 402.1 293 71.0
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 8.3e-110 401.0 292 70.5
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 8.3e-110 401.0 292 70.5
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 8.3e-110 401.0 293 71.7
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 1.1e-109 400.6 298 71.5
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 1.4e-109 400.2 308 72.1
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 1.4e-109 400.2 295 73.2
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 7.0e-109 397.9 292 70.2
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 2.7e-108 396.0 298 71.5
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 3.5e-108 395.6 303 68.0
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 3.5e-108 395.6 304 69.4
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 4.5e-108 395.2 295 72.5
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.0e-107 394.0 304 70.7
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 2.9e-107 392.5 299 73.2
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 1.5e-106 390.2 297 66.3
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 1.9e-106 389.8 303 71.3
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 4.2e-106 388.7 303 66.7
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 1.6e-105 386.7 297 70.4
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 2.1e-105 386.3 298 66.8
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 2.1e-105 386.3 299 67.2
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 3.6e-105 385.6 297 70.7
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 3.6e-105 385.6 297 70.7
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 3.6e-105 385.6 304 68.8
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 6.1e-105 384.8 293 68.6
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 3.0e-104 382.5 298 71.5
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 4.0e-104 382.1 304 69.1
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 2.0e-103 379.8 298 64.1
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 2.0e-103 379.8 293 71.0
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 3.4e-103 379.0 303 67.7
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 7.5e-103 377.9 305 66.9
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 7.5e-103 377.9 299 70.2
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 4.5e-100 368.6 294 64.3
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 1.7e-99 366.7 294 64.3
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 5.0e-99 365.2 302 64.9
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 6.6e-99 364.8 285 62.1
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 3.6e-97 359.0 294 65.6
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 1.8e-96 356.7 290 65.2
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 1.8e-96 356.7 304 63.2
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 2.3e-96 356.3 290 65.9
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 5.2e-96 355.1 308 60.4
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 8.9e-96 354.4 299 64.2
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 1.5e-95 353.6 285 64.2
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 2.0e-95 353.2 297 65.7
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 3.4e-95 352.4 307 60.6
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 7.5e-95 351.3 294 64.3
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 1.3e-94 350.5 306 63.1
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 6.4e-94 348.2 258 70.2
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 1.1e-93 347.4 289 66.1
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 1.1e-93 347.4 310 66.1
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 1.4e-93 347.1 291 61.9
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 1.9e-93 346.7 316 58.5
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 3.2e-93 345.9 297 63.3
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 3.2e-93 345.9 297 63.3
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 3.2e-93 345.9 293 63.8
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 3.2e-93 345.9 294 62.6
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 3.2e-93 345.9 214 80.8
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 5.4e-93 345.1 277 64.3
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 2.0e-92 343.2 236 76.3
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 6.0e-92 341.7 314 61.5
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 1.0e-91 340.9 314 61.5
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 2.3e-91 339.7 308 61.4
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 3.0e-91 339.3 314 61.1
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 6.6e-91 338.2 300 61.7
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 8.6e-91 337.8 314 61.1
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 2.5e-90 336.3 314 60.8
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 2.5e-90 336.3 304 62.2
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 3.3e-90 335.9 303 60.4
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 8.0e-89 331.3 294 61.9
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 1.1e-88 330.9 285 62.5
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 2.3e-88 329.7 311 60.1
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 2.3e-88 329.7 299 60.9
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 6.8e-88 328.2 284 60.9
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 1.5e-87 327.0 309 57.0
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 3.4e-87 325.9 302 61.3
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 7.5e-87 324.7 255 68.2
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 7.5e-87 324.7 263 69.2
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 1.3e-86 323.9 281 62.6
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 1.7e-86 323.6 300 60.7
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 2.2e-86 323.2 296 60.5
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 3.7e-86 322.4 356 53.1
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 1.6e-84 317.0 302 59.6
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 6.6e-83 311.6 296 54.1
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.9e-82 310.1 296 52.7
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 9.5e-82 307.8 293 54.3
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 2.4e-77 293.1 230 72.2
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 9.2e-77 291.2 238 61.8
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 6.0e-76 288.5 297 53.9
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 4.3e-74 282.3 270 56.3
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 1.6e-65 253.8 186 71.5
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 5.3e-64 248.8 306 51.0
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 7.6e-63 245.0 293 49.5
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 1.3e-62 244.2 310 46.8
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 2.4e-56 223.4 221 54.8
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 6.9e-56 221.9 192 57.8
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 2.7e-52 209.9 308 40.3
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 1.2e-47 194.5 203 52.2
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 2.7e-44 183.3 275 45.5
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 6.0e-44 182.2 255 42.4
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 1.7e-38 164.1 100 82.0
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 1.6e-33 147.5 130 58.5
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.5e-31 141.0 135 60.0
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.5e-31 141.0 135 60.0
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 1.3e-25 121.3 68 82.4
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 1.7e-25 120.9 193 32.1
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 3.1e-24 116.7 206 32.5
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 1.7e-22 110.9 193 34.2
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.0e-22 109.4 66 75.8
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 1.4e-19 101.3 96 64.6
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 5.1e-19 99.4 63 76.2
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 2.0e-18 97.4 62 75.8
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 1.3e-17 94.7 130 53.1
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.0e-15 87.4 52 78.8
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.3e-14 84.7 119 47.1
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.6e-12 77.8 50 72.0
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 1.6e-12 77.8 43 81.4
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 4.7e-12 76.3 117 46.2
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 5.2e-11 72.8 53 62.3
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 6.7e-11 72.4 39 84.6
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 6.7e-11 72.4 45 68.9
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 2.6e-10 70.5 45 68.9


User provided reference genes

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