Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 1.1e-279 966.1 505 100.0
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 7.8e-222 773.9 507 80.1
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 5.8e-217 757.7 507 80.3
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 5.6e-212 741.1 506 78.3
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 9.6e-212 740.3 512 78.3
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 2.1e-211 739.2 498 77.9
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 1.9e-207 726.1 488 75.4
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 3.0e-205 718.8 504 73.8
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 9.0e-202 707.2 505 73.1
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 4.2e-199 698.4 505 72.1
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 5.1e-189 664.8 506 69.6
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 3.2e-183 645.6 422 79.1
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 4.3e-172 608.6 497 63.0
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 3.2e-159 565.8 504 58.7
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 4.2e-159 565.5 494 60.7
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 2.2e-155 553.1 505 57.8
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 7.7e-153 544.7 519 59.3
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 3.7e-147 525.8 510 56.5
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 8.2e-147 524.6 511 56.2
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 4.5e-145 518.8 499 57.3
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 1.7e-144 516.9 523 54.9
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 6.5e-144 515.0 501 56.3
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 7.2e-143 511.5 504 58.1
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 8.8e-141 504.6 537 52.3
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 2.2e-139 500.0 499 54.1
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 2.8e-139 499.6 500 53.2
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 3.7e-139 499.2 498 55.6
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 6.3e-139 498.4 494 56.5
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 8.3e-139 498.0 499 54.3
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 1.4e-138 497.3 494 56.5
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.4e-138 497.3 494 56.5
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 3.5e-137 492.7 494 56.5
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 1.0e-136 491.1 508 53.7
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 1.7e-136 490.3 505 52.7
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 5.0e-136 488.8 502 54.4
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 1.1e-135 487.6 535 51.4
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 2.5e-135 486.5 498 53.4
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 7.2e-135 485.0 499 52.3
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 2.7e-134 483.0 504 53.6
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 1.0e-133 481.1 502 52.8
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 2.3e-133 479.9 499 52.3
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 3.0e-133 479.6 504 53.0
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 3.0e-133 479.6 504 53.4
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 2.8e-131 473.0 499 53.9
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 8.3e-131 471.5 498 52.8
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.3e-128 463.4 530 50.6
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 8.6e-128 461.5 502 51.6
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 2.5e-127 459.9 518 50.2
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 2.1e-126 456.8 503 49.7
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 2.8e-126 456.4 506 50.4
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 4.7e-126 455.7 491 49.5
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 3.4e-124 449.5 444 55.0
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 2.9e-123 446.4 506 49.6
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 1.1e-122 444.5 502 48.8
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 1.1e-122 444.5 515 51.3
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 2.4e-122 443.4 510 49.0
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 1.6e-121 440.7 507 50.5
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 5.9e-121 438.7 505 49.5
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 2.3e-120 436.8 506 49.6
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 1.5e-119 434.1 507 48.3
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 3.3e-119 433.0 496 47.2
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 5.6e-119 432.2 506 48.4
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 5.6e-119 432.2 575 45.7
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 7.3e-119 431.8 507 48.7
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 9.5e-119 431.4 499 49.1
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 2.1e-118 430.3 504 48.2
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 1.4e-117 427.6 508 47.6
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 3.1e-117 426.4 441 50.6
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 1.2e-116 424.5 512 49.2
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 1.5e-116 424.1 515 46.8
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 3.4e-116 422.9 510 48.4
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 3.4e-116 422.9 506 49.4
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 1.3e-115 421.0 510 47.6
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 1.3e-115 421.0 511 46.6
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 1.7e-115 420.6 514 47.5
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 1.9e-114 417.2 508 45.1
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 1.6e-113 414.1 511 47.0
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 6.0e-113 412.1 506 47.0
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 7.8e-113 411.8 502 45.8
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 2.3e-112 410.2 521 46.6
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 5.6e-111 405.6 505 46.5
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 3.2e-106 389.8 294 75.5
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 2.1e-105 387.1 445 51.9
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 1.2e-100 371.3 497 46.7
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 2.0e-100 370.5 427 48.2
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 4.6e-97 359.4 260 70.8
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 2.3e-96 357.1 373 52.0
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 8.1e-94 348.6 430 44.7
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 8.4e-91 338.6 374 51.6
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 1.1e-90 338.2 507 41.4
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 1.0e-88 331.6 493 42.4
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 1.1e-87 328.2 500 42.2
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 4.3e-87 326.2 409 46.5
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 1.1e-82 311.6 466 39.5
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 2.0e-76 290.8 500 38.8
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 1.9e-71 274.2 498 39.0
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 2.1e-70 270.8 209 64.6
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 1.3e-67 261.5 212 61.8
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 1.6e-65 254.6 517 34.4
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 6.3e-62 242.7 361 43.8
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 2.4e-61 240.7 549 32.1
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 2.0e-60 237.7 320 44.1
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 3.4e-60 236.9 299 42.5
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 8.5e-59 232.3 280 46.4
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.6e-57 228.0 216 57.9
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 1.2e-52 211.8 508 31.9
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 1.2e-49 201.8 124 78.2
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 1.1e-47 195.3 527 27.9
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 1.2e-44 185.3 118 75.4
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.1e-41 174.5 124 72.6
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 9.7e-39 165.6 136 65.4
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 7.7e-36 156.0 199 43.2
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 4.2e-34 150.2 136 59.6
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 6.5e-27 126.3 70 85.7
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 4.2e-26 123.6 83 74.7
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 9.5e-18 95.9 108 51.9
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 1.8e-16 91.7 128 40.6
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 3.7e-14 84.0 48 83.3
Medtr6g471100 Medicago truncatula HOM05D000162 ORTHO05D000090 9.2e-13 79.3 103 50.5
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 2.9e-11 74.3 54 68.5
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 1.6e-09 68.6 171 32.2
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 3.6e-09 67.4 48 62.5
Zm00001eb135490 Zea mays HOM05D006388 ORTHO05D008026 1.7e-06 58.5 49 59.2


User provided reference genes

Program Settings