Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 5.1e-117 424.5 222 100.0
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 2.5e-103 379.0 226 88.5
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 3.9e-101 371.7 229 84.3
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 3.1e-98 362.1 226 84.1
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.3e-96 356.7 227 82.8
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 9.4e-95 350.5 225 81.8
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 7.9e-94 347.4 227 80.6
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 1.8e-93 346.3 222 83.8
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 4.8e-91 338.2 224 78.6
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.1e-90 337.0 223 78.5
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 2.4e-90 335.9 223 78.0
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 4.1e-90 335.1 223 77.6
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 9.1e-90 334.0 223 77.1
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.9e-88 328.9 224 77.7
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 2.9e-88 328.9 223 77.1
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 5.0e-88 328.2 223 78.5
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 3.6e-86 322.0 224 75.9
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.8e-82 309.7 224 73.2
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 3.1e-82 308.9 220 72.7
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 9.1e-82 307.4 220 72.7
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 5.9e-81 304.7 220 72.7
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 2.2e-80 302.8 225 71.6
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.9e-80 302.4 227 71.8
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 2.9e-80 302.4 220 70.5
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 3.8e-80 302.0 220 71.4
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 4.2e-79 298.5 227 70.9
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 4.2e-79 298.5 221 71.9
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.2e-79 297.7 219 69.4
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 9.4e-79 297.4 221 72.4
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 1.2e-78 297.0 220 72.3
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.2e-78 297.0 221 72.4
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 2.1e-78 296.2 219 68.9
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.7e-78 295.8 218 71.1
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 3.6e-78 295.4 218 71.1
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 3.6e-78 295.4 223 70.4
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.7e-78 295.0 219 68.5
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 4.7e-78 295.0 218 70.6
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.0e-77 292.0 219 68.5
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 4.0e-77 292.0 219 70.8
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 5.2e-77 291.6 222 68.9
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 5.2e-77 291.6 220 70.9
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 6.7e-77 291.2 222 70.7
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 6.7e-77 291.2 222 68.5
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 6.7e-77 291.2 221 70.6
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 2.0e-76 289.7 153 98.7
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 4.4e-76 288.5 218 68.3
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 4.4e-76 288.5 222 70.3
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 4.4e-76 288.5 216 71.8
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 5.7e-76 288.1 219 70.8
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 5.7e-76 288.1 226 69.0
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.7e-75 286.6 220 70.0
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.7e-75 285.4 225 68.9
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.8e-75 285.0 222 68.9
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.3e-75 284.6 225 68.4
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 6.3e-75 284.6 217 68.2
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 6.3e-75 284.6 222 68.0
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 9.1e-74 280.8 219 69.4
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.6e-73 280.0 222 68.0
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 2.0e-73 279.6 228 68.4
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.7e-73 279.3 225 67.6
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 5.9e-73 278.1 220 69.1
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 7.2e-71 271.2 222 66.7
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 9.4e-71 270.8 222 66.2
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 3.6e-70 268.9 222 63.5
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 3.6e-70 268.9 220 66.4
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 6.1e-70 268.1 222 63.1
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 6.1e-70 268.1 227 62.6
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 1.4e-69 266.9 218 64.2
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.8e-69 266.5 229 61.6
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 5.2e-69 265.0 220 64.5
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 6.8e-69 264.6 236 59.7
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 8.8e-69 264.2 232 59.1
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.2e-68 263.8 210 67.1
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.5e-68 263.5 233 61.8
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 7.5e-68 261.2 230 58.3
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 9.8e-68 260.8 230 61.7
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 4.8e-67 258.5 218 60.1
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 4.8e-67 258.5 218 60.1
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 8.3e-67 257.7 225 61.8
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.8e-66 256.5 218 60.1
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 1.8e-66 256.5 218 59.6
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 1.8e-66 256.5 218 59.6
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.8e-66 256.5 233 59.2
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.8e-66 256.5 218 61.0
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 5.4e-66 255.0 231 57.1
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 5.4e-66 255.0 218 61.5
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 9.1e-66 254.2 219 60.7
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.5e-65 252.3 228 58.3
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 4.5e-65 251.9 219 60.3
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 5.9e-65 251.5 218 61.0
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.3e-64 250.4 219 60.3
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.3e-64 250.4 222 57.2
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 3.8e-64 248.8 218 61.5
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.1e-63 247.3 218 62.8
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 4.2e-63 245.4 232 57.3
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 7.2e-63 244.6 218 58.7
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 7.2e-63 244.6 219 60.3
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 1.6e-62 243.4 221 58.4
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.7e-62 242.7 218 59.2
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 3.6e-62 242.3 223 62.8
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 4.7e-62 241.9 218 58.7
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.4e-61 240.4 218 58.3
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 1.8e-61 240.0 222 58.1
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.8e-61 240.0 231 55.8
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 3.0e-61 239.2 275 50.5
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 6.8e-61 238.0 220 60.5
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.2e-60 237.3 252 52.4
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.5e-60 236.9 218 59.2
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 3.4e-60 235.7 214 59.3
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.7e-57 226.1 221 57.0
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 3.5e-57 225.7 187 63.1
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 5.9e-57 224.9 169 72.2
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 2.3e-56 223.0 223 56.1
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.8e-56 222.2 160 71.9
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 3.8e-56 222.2 232 54.3
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 8.0e-54 214.5 224 54.5
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 1.8e-53 213.4 160 70.0
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 2.3e-53 213.0 161 70.2
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.2e-52 210.7 172 68.6
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 4.4e-52 208.8 226 51.3
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 3.2e-50 202.6 219 52.5
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 5.9e-49 198.4 116 89.7
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.3e-48 197.2 170 63.5
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 4.3e-47 192.2 160 60.6
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.2e-46 190.7 242 43.8
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 3.1e-45 186.0 238 44.1
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.2e-44 184.1 142 69.0
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 7.8e-41 171.4 142 63.4
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.3e-40 170.6 145 64.8
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 4.3e-39 165.6 220 43.2
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 5.6e-39 165.2 200 49.5
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 7.3e-39 164.9 218 46.3
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.5e-36 157.1 115 70.4
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 2.6e-36 156.4 115 68.7
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 9.2e-34 147.9 118 69.5
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 6.0e-33 145.2 187 46.0
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.0e-32 144.4 193 45.1
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 1.7e-32 143.7 232 40.9
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 5.6e-31 138.7 217 41.0
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.2e-30 135.2 142 57.7
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.8e-29 133.7 195 50.3
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.2e-29 132.1 145 53.1
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 6.8e-29 131.7 189 46.0
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 2.0e-28 130.2 215 37.7
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 3.4e-28 129.4 126 60.3
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 1.3e-27 127.5 223 34.5
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 1.7e-27 127.1 139 54.0
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.6e-25 120.6 181 42.0
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 1.6e-22 110.5 92 57.6
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.6e-22 109.4 79 69.6
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.6e-22 109.4 79 69.6
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 8.1e-22 108.2 75 76.0
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 1.1e-21 107.8 144 47.2
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.1e-21 107.8 93 64.5
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.5e-20 104.0 180 39.4
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 6.4e-19 98.6 214 34.1
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 3.2e-18 96.3 79 60.8
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.2e-17 94.4 77 61.0
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.1e-17 93.6 171 39.8
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 6.0e-17 92.0 54 83.3
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 7.8e-17 91.7 173 37.0
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 2.3e-16 90.1 119 43.7
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 3.9e-16 89.4 83 57.8
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.3e-14 84.3 85 52.9
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.6e-14 84.0 95 51.6
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 1.6e-14 84.0 72 65.3
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 3.6e-14 82.8 51 72.5
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.8e-13 80.5 50 72.0
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 9.0e-13 78.2 80 50.0
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 9.0e-13 78.2 202 32.2
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 9.0e-13 78.2 202 32.2
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 9.0e-13 78.2 52 71.2
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 1.5e-12 77.4 50 70.0
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 1.5e-12 77.4 50 70.0
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.7e-11 73.9 70 60.0
Medtr1g102820 Medicago truncatula HOM05D003667 ORTHO05D004397 9.3e-10 68.2 57 66.7
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 3.5e-09 66.2 55 65.5
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 7.9e-09 65.1 189 30.7
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 7.9e-09 65.1 80 41.2
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 5.1e-08 62.4 42 69.0
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 9.6e-07 58.2 50 66.0
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 4.8e-06 55.8 78 46.2
FvH4_5g38702 Fragaria vesca HOM05D003667 ORTHO05D004397 8.1e-06 55.1 38 68.4
Oeu032224.2 Olea europaea HOM05D003667 ORTHO05D004397 8.1e-06 55.1 44 65.9


User provided reference genes

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