Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0005111 Lotus japonicus HOM05D006863 ORTHO05D009101 8.5e-193 676.8 332 100.0
Medtr5g054910 Medicago truncatula HOM05D006863 ORTHO05D009101 9.9e-141 503.8 342 76.0
TPR.G38252 Trifolium pratense HOM05D006863 ORTHO05D009101 2.4e-139 499.2 344 75.9
Phvul.002G082500 Phaseolus vulgaris HOM05D006863 ORTHO05D009101 6.6e-137 491.1 339 76.1
Glyma.08G260300 Glycine max HOM05D006863 ORTHO05D009101 1.4e-134 483.4 341 74.2
Lalb_Chr17g0342021 Lupinus albus HOM05D006863 ORTHO05D009101 1.5e-133 479.9 336 72.6
arahy.Tifrunner.gnm1.ann1.2EV214 Arachis hypogaea HOM05D006863 ORTHO05D009101 7.9e-130 467.6 340 71.8
VMungo1215G1485 Vigna mungo HOM05D006863 ORTHO05D009101 1.0e-129 467.2 337 71.8
arahy.Tifrunner.gnm1.ann1.S0U20I Arachis hypogaea HOM05D006863 ORTHO05D009101 6.7e-129 464.5 345 70.7
Dinv04484 Davidia involucrata HOM05D006863 ORTHO05D009101 7.1e-123 444.5 255 83.1
arahy.Tifrunner.gnm1.ann1.PE9U7E Arachis hypogaea HOM05D006863 ORTHO05D009101 1.0e-121 440.7 374 64.4
CSS0023691 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 1.0e-121 440.7 263 79.8
HanXRQChr17g0552211 Helianthus annuus HOM05D006863 ORTHO05D009101 3.7e-119 432.2 269 76.2
QL01p043996 Quercus lobata HOM05D006863 ORTHO05D009101 6.9e-118 427.9 250 82.8
RcHm_v2.0_Chr4g0435511 Rosa chinensis HOM05D006863 ORTHO05D009101 5.8e-117 424.9 331 65.3
Ciclev10031676m.g Citrus clementina HOM05D006863 ORTHO05D009101 7.6e-117 424.5 336 66.1
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 1.0e-116 424.1 284 74.6
Gorai.013G081400 Gossypium raimondii HOM05D006863 ORTHO05D009101 2.2e-116 422.9 327 65.7
GSVIVG01011920001 Vitis vinifera HOM05D006863 ORTHO05D009101 3.8e-116 422.2 254 78.7
Potri.010G127200 Populus trichocarpa HOM05D006863 ORTHO05D009101 6.5e-116 421.4 314 69.1
Rhsim09G0110000 Rhododendron simsii HOM05D006863 ORTHO05D009101 1.1e-115 420.6 342 64.9
TAR371G0467 Trochodendron aralioides HOM05D006863 ORTHO05D009101 1.1e-115 420.6 266 76.3
Manes.14G100000 Manihot esculenta HOM05D006863 ORTHO05D009101 1.9e-115 419.9 282 72.7
Thecc.02G357800 Theobroma cacao HOM05D006863 ORTHO05D009101 1.9e-115 419.9 336 63.4
Atru.chr11.1297 Acer truncatum HOM05D006863 ORTHO05D009101 3.2e-115 419.1 275 74.5
Gohir.D13G071100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 3.2e-115 419.1 327 65.1
Gohir.1Z049378 Gossypium hirsutum HOM05D006863 ORTHO05D009101 5.5e-115 418.3 327 65.4
Gohir.A13G053600 Gossypium hirsutum HOM05D006863 ORTHO05D009101 5.5e-115 418.3 327 65.4
Sabra10G0096600 Salix brachista HOM05D006863 ORTHO05D009101 5.5e-115 418.3 315 68.9
Lj3C1017T9 Lonicera japonica HOM05D006863 ORTHO05D009101 9.3e-115 417.5 266 76.7
Eucgr.G02336 Eucalyptus grandis HOM05D006863 ORTHO05D009101 1.2e-114 417.2 258 76.7
CsaV3_6G003370 Cucumis sativus L. HOM05D006863 ORTHO05D009101 3.5e-114 415.6 308 65.6
Sed0022103 Sechium edule HOM05D006863 ORTHO05D009101 1.0e-113 414.1 273 72.9
Duzib251G0889 Durio zibethinus HOM05D006863 ORTHO05D009101 1.8e-113 413.3 327 65.4
ECA246G5009 Erigeron canadensis HOM05D006863 ORTHO05D009101 2.3e-113 412.9 253 74.7
ClCG08G005160 Citrullus lanatus HOM05D006863 ORTHO05D009101 1.1e-112 410.6 329 64.1
MD13G1044100 Malus domestica HOM05D006863 ORTHO05D009101 1.1e-112 410.6 340 64.4
Prupe.1G308400 Prunus persica HOM05D006863 ORTHO05D009101 1.1e-112 410.6 339 64.6
Nitab4.5_0000280g0240 Nicotiana tabacum HOM05D006863 ORTHO05D009101 9.7e-112 407.5 256 73.4
PGR119G0754 Punica granatum HOM05D006863 ORTHO05D009101 2.8e-111 406.0 260 74.6
Sopen04g002190 Solanum pennellii HOM05D006863 ORTHO05D009101 4.8e-111 405.2 277 69.7
Thhalv10004539m.g Eutrema salsugineum HOM05D006863 ORTHO05D009101 1.8e-110 403.3 267 72.3
PGSC0003DMG401015876 Solanum tuberosum HOM05D006863 ORTHO05D009101 3.1e-110 402.5 253 74.3
AL5G14420 Arabidopsis lyrata HOM05D006863 ORTHO05D009101 5.3e-110 401.7 260 71.9
Sp2g15050 Schrenkiella parvula HOM05D006863 ORTHO05D009101 9.0e-110 401.0 265 72.8
EL10Ac6g14444 Beta vulgaris HOM05D006863 ORTHO05D009101 4.5e-109 398.7 315 64.1
Cpa.g.sc1.191 Carica papaya HOM05D006863 ORTHO05D009101 4.5e-109 398.7 319 64.6
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 5.9e-109 398.3 265 72.1
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 5.9e-109 398.3 265 72.1
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 5.9e-109 398.3 265 72.1
FAN12G1275 Fragaria x ananassa HOM05D006863 ORTHO05D009101 5.9e-109 398.3 331 63.1
AT3G25805 Arabidopsis thaliana HOM05D006863 ORTHO05D009101 1.7e-108 396.7 265 70.6
Carub.0005s0363 Capsella rubella HOM05D006863 ORTHO05D009101 2.9e-108 396.0 266 69.9
Lsat_1_v5_gn_3_59660 Lactuca sativa HOM05D006863 ORTHO05D009101 2.9e-108 396.0 330 62.1
vmacro10546 Vaccinium macrocarpon HOM05D006863 ORTHO05D009101 6.5e-108 394.8 392 55.9
Cc11_g10350 Coffea canephora HOM05D006863 ORTHO05D009101 8.5e-108 394.4 255 72.5
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 1.4e-107 393.7 255 72.5
Aa31LG2G6540 Aethionema arabicum HOM05D006863 ORTHO05D009101 1.9e-107 393.3 279 68.5
Solyc04g007110.4 Solanum lycopersicum HOM05D006863 ORTHO05D009101 1.9e-107 393.3 254 73.2
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 5.5e-107 391.7 255 72.5
CiPaw.15G005400 Carya illinoinensis HOM05D006863 ORTHO05D009101 5.5e-107 391.7 227 81.9
Nitab4.5_0009260g0040 Nicotiana tabacum HOM05D006863 ORTHO05D009101 5.5e-107 391.7 253 72.7
Migut.L01080 Erythranthe guttata HOM05D006863 ORTHO05D009101 2.1e-106 389.8 252 70.6
THA.LOC104825705 Tarenaya hassleriana HOM05D006863 ORTHO05D009101 2.3e-105 386.3 322 60.6
MSTRG.824 Avicennia marina HOM05D006863 ORTHO05D009101 2.5e-104 382.9 256 68.8
Aqoxy3G00331 Aquilegia oxysepala HOM05D006863 ORTHO05D009101 3.3e-104 382.5 267 69.3
SalBow8G2780 Salvia bowleyana HOM05D006863 ORTHO05D009101 4.3e-104 382.1 260 68.5
Peaxi162Scf00086g00919 Petunia axillaris HOM05D006863 ORTHO05D009101 2.2e-103 379.8 338 57.4
Actinidia14870 Actinidia chinensis HOM05D006863 ORTHO05D009101 2.8e-103 379.4 248 75.4
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 6.3e-103 378.3 377 55.2
PSO447G0382 Papaver somniferum HOM05D006863 ORTHO05D009101 8.2e-103 377.9 248 70.6
MBI12_g32420_MAGBIO Magnolia biondii HOM05D006863 ORTHO05D009101 1.8e-102 376.7 248 71.8
AUR62035252 Chenopodium quinoa HOM05D006863 ORTHO05D009101 2.4e-102 376.3 342 57.3
PSO210G1549 Papaver somniferum HOM05D006863 ORTHO05D009101 2.4e-102 376.3 247 70.4
BcaB07g30631 Brassica carinata HOM05D001825 ORTHO05D009101 1.2e-101 374.0 305 63.0
Nn4g23802 Nelumbo nucifera HOM05D006863 ORTHO05D009101 4.2e-99 365.5 234 74.8
FvH4_4g27661 Fragaria vesca HOM05D006863 ORTHO05D009101 3.6e-98 362.5 222 77.0
HPP92_023480 Vanilla planifolia HOM05D006863 ORTHO05D009101 3.0e-97 359.4 300 58.3
Os04g0462300 Oryza sativa ssp. japonica HOM05D006863 ORTHO05D009101 2.6e-96 356.3 251 64.1
Psat4g144720 Pisum sativum HOM05D006863 ORTHO05D009101 2.0e-93 346.7 213 78.4
SGA_v2.0_scaffold32G13125 Striga asiatica HOM05D006863 ORTHO05D009101 8.0e-90 334.7 292 56.5
Peaxi162Scf00086g00918 Petunia axillaris HOM05D006863 ORTHO05D009101 2.6e-85 319.7 330 52.4
DCAR_026725 Daucus carota HOM05D006863 ORTHO05D009101 1.3e-84 317.4 325 52.0
unitig_22.g6873 Utricularia gibba HOM05D001580 ORTHO05D009101 1.2e-82 310.8 267 57.7
ATR0141G001 Amborella trichopoda HOM05D006863 ORTHO05D009101 1.8e-81 307.0 254 58.3
Mapoly0073s0050 Marchantia polymorpha HOM05D006863 ORTHO05D009101 7.5e-80 301.6 266 55.6
CARHR146720 Cardamine hirsuta HOM05D006863 ORTHO05D009101 2.8e-79 299.7 191 71.7
Glyma.20G042600 Glycine max HOM05D006863 ORTHO05D009101 8.2e-79 298.1 165 85.5
TWI75G0199 Tripterygium wilfordii HOM05D006863 ORTHO05D009101 7.0e-78 295.0 180 75.6
Pp3c1_42010 Physcomitrium patens HOM05D006863 ORTHO05D009101 3.8e-76 289.3 281 49.5
Zm00001eb080610 Zea mays HOM05D006863 ORTHO05D009101 6.5e-76 288.5 226 61.1
AUR62002895 Chenopodium quinoa HOM05D006863 ORTHO05D009101 8.5e-76 288.1 192 69.8
SEGI_08911 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 3.2e-75 286.2 223 58.7
SEGI_20209 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 3.2e-75 286.2 223 58.7
FAN22G1855 Fragaria x ananassa HOM05D006863 ORTHO05D009101 5.5e-75 285.4 178 74.7
Haze_17458 Corylus avellana HOM05D006863 ORTHO05D009101 1.2e-74 284.3 249 62.2
Sc04g0006570 Simmondsia chinensis HOM05D006863 ORTHO05D009101 2.8e-71 273.1 179 73.2
AUR62002896 Chenopodium quinoa HOM05D006863 ORTHO05D009101 4.5e-69 265.8 195 65.1
SMO111G0216 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 2.9e-68 263.1 246 50.0
Ca_27358_v3 Cicer arietinum L. HOM05D006863 ORTHO05D009101 2.3e-65 253.4 195 67.7
MELO3C011551.2 Cucumis melo HOM05D006863 ORTHO05D009101 8.9e-65 251.5 165 69.1
CSS0005134 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 3.5e-61 239.6 263 51.0
CSS0013896 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 3.5e-61 239.6 263 51.0
AagrBONN_evm.TU.Sc2ySwM_117.2959 Anthoceros agrestis HOM05D006863 ORTHO05D009101 1.5e-59 234.2 215 50.7
Hund25085 Selenicereus undatus HOM05D006863 ORTHO05D009101 1.3e-55 221.1 188 61.2
COL.COLO4_07899 Corchorus olitorius HOM05D006863 ORTHO05D009101 1.6e-53 214.2 336 41.4
Gorai.012G052200 Gossypium raimondii HOM05D006863 ORTHO05D009101 4.3e-43 179.5 127 66.9
Gohir.D04G047100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.1e-41 174.9 127 66.1
SMO358G0636 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 3.2e-38 163.3 246 37.4
Gohir.D11G195601 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.5e-35 154.5 127 61.4
CDE11G0826 Ceratophyllum demersum HOM05D006863 ORTHO05D009101 1.7e-31 141.0 102 63.7
MD16G1044900 Malus domestica HOM05D006863 ORTHO05D009101 3.3e-27 126.7 92 67.4
PRCOL_00006784 Prasinoderma coloniale HOM05D006863 ORTHO05D002945 9.6e-27 125.2 323 32.8
MCO04G047 Micromonas commoda HOM05D006863 ORTHO05D002945 6.9e-25 119.0 274 31.0
Oeu042053.1 Olea europaea HOM05D006863 ORTHO05D009101 2.7e-21 107.1 60 75.0
Sc04g0006560 Simmondsia chinensis HOM05D006863 ORTHO05D009101 7.8e-21 105.5 146 45.9
Cre02.g088500 Chlamydomonas reinhardtii HOM05D002745 ORTHO05D002945 7.3e-19 99.0 272 28.3
Haze_17459 Corylus avellana HOM05D006863 ORTHO05D044797 3.3e-11 73.6 113 47.8
Psat2g101840 Pisum sativum HOM05D006863 ORTHO05D044797 3.1e-09 67.0 102 44.1


User provided reference genes

Program Settings