Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0005002 Lotus japonicus HOM05D007356 ORTHO05D009247 6.4e-247 857.1 462 100.0
arahy.Tifrunner.gnm1.ann1.3VIJ8X Arachis hypogaea HOM05D007356 ORTHO05D009247 1.0e-151 540.8 467 64.5
arahy.Tifrunner.gnm1.ann1.33CL05 Arachis hypogaea HOM05D007356 ORTHO05D009247 1.7e-151 540.0 463 64.6
Glyma.13G047100 Glycine max HOM05D007356 ORTHO05D009247 1.9e-142 510.0 475 63.4
TPR.G32461 Trifolium pratense HOM05D007356 ORTHO05D009247 4.7e-141 505.4 483 61.1
Phvul.004G062800 Phaseolus vulgaris HOM05D007356 ORTHO05D009247 3.5e-136 489.2 474 62.2
Medtr6g017235 Medicago truncatula HOM05D007356 ORTHO05D009247 2.9e-130 469.5 473 59.2
VMungo0464G1268 Vigna mungo HOM05D007356 ORTHO05D009247 3.9e-127 459.1 474 58.0
Lalb_Chr06g0174681 Lupinus albus HOM05D007356 ORTHO05D009247 3.8e-122 442.6 465 56.6
Haze_14128 Corylus avellana HOM05D007356 ORTHO05D009247 3.9e-119 432.6 473 52.6
Atru.chr8.830 Acer truncatum HOM05D007356 ORTHO05D009247 1.3e-117 427.6 463 53.6
Cfa007946 Carpinus fangiana HOM05D007356 ORTHO05D009247 1.1e-116 424.5 472 53.4
Prupe.3G239800 Prunus persica HOM05D007356 ORTHO05D009247 1.1e-116 424.5 478 51.9
CANSAT64G1351 Cannabis sativa HOM05D007356 ORTHO05D009247 1.2e-112 411.0 476 50.2
Psat1g012920 Pisum sativum HOM05D007356 ORTHO05D009247 1.5e-110 404.1 334 68.6
MD09G1084700 Malus domestica HOM05D007356 ORTHO05D009247 1.4e-108 397.5 481 51.6
Manes.01G108100 Manihot esculenta HOM05D007356 ORTHO05D009247 4.5e-107 392.5 471 53.1
QL02p052579 Quercus lobata HOM05D007356 ORTHO05D009247 4.5e-107 392.5 565 45.5
Potri.017G112500 Populus trichocarpa HOM05D007356 ORTHO05D009247 2.5e-105 386.7 467 51.0
FAN14G2396 Fragaria x ananassa HOM05D007356 ORTHO05D009247 3.5e-104 382.9 457 51.6
FvH4_6g45360 Fragaria vesca HOM05D007356 ORTHO05D009247 4.6e-104 382.5 460 51.5
Thecc.04G137600 Theobroma cacao HOM05D007356 ORTHO05D009247 1.5e-102 377.5 470 46.6
ClCG05G012060 Citrullus lanatus HOM05D007356 ORTHO05D009247 1.6e-101 374.0 480 47.7
Ciclev10011716m.g Citrus clementina HOM05D007356 ORTHO05D009247 1.6e-101 374.0 461 49.9
CsaV3_3G020350 Cucumis sativus L. HOM05D007356 ORTHO05D009247 2.8e-101 373.2 486 47.5
MD17G1074100 Malus domestica HOM05D007356 ORTHO05D009247 3.7e-101 372.9 493 47.1
Duzib133G0592 Durio zibethinus HOM05D007356 ORTHO05D009247 9.0e-100 368.2 470 47.9
Hma1.2p1_0136F.1_g062070 Hydrangea macrophylla HOM05D007356 ORTHO05D009247 4.5e-99 365.9 478 45.4
Rhsim10G0063400 Rhododendron simsii HOM05D007356 ORTHO05D009247 4.2e-97 359.4 463 48.4
Cpa.g.sc179.26 Carica papaya HOM05D007356 ORTHO05D009247 7.9e-96 355.1 475 45.7
Ca_26179_v3 Cicer arietinum L. HOM05D007356 ORTHO05D009247 1.9e-94 350.5 282 69.5
COL.COLO4_16192 Corchorus olitorius HOM05D007356 ORTHO05D009247 3.1e-92 343.2 463 45.1
TWI31G0521 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 3.1e-92 343.2 468 47.0
vmacro05573 Vaccinium macrocarpon HOM05D007356 ORTHO05D009247 4.1e-92 342.8 503 44.1
Gohir.A11G162300 Gossypium hirsutum HOM05D007356 ORTHO05D009247 1.2e-91 341.3 472 44.9
Dinv34849 Davidia involucrata HOM05D007356 ORTHO05D009247 1.3e-90 337.8 430 47.0
Sabra17G0093200 Salix brachista HOM05D007356 ORTHO05D009247 1.3e-90 337.8 476 49.6
Gorai.007G180100 Gossypium raimondii HOM05D007356 ORTHO05D009247 5.0e-90 335.9 466 45.1
Gohir.D11G168600 Gossypium hirsutum HOM05D007356 ORTHO05D009247 1.2e-88 331.3 462 45.2
TAR374G1737 Trochodendron aralioides HOM05D007356 ORTHO05D009247 2.6e-86 323.6 499 43.3
TWI79G1397 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 9.7e-86 321.6 448 44.2
Nitab4.5_0008781g0020 Nicotiana tabacum HOM05D007356 ORTHO05D009247 2.2e-82 310.5 467 43.9
Aqoxy3G03920 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 5.0e-82 309.3 495 40.6
THA.LOC104820954 Tarenaya hassleriana HOM05D007356 ORTHO05D009247 5.0e-82 309.3 478 40.8
PGSC0003DMG400012678 Solanum tuberosum HOM05D007356 ORTHO05D009247 1.2e-80 304.7 440 44.3
PSO063G7355 Papaver somniferum HOM05D007356 ORTHO05D009247 2.7e-80 303.5 500 40.8
Peaxi162Scf01327g00135 Petunia axillaris HOM05D007356 ORTHO05D009247 3.6e-80 303.1 467 43.0
Nn4g23745 Nelumbo nucifera HOM05D007356 ORTHO05D009247 1.0e-79 301.6 502 41.8
Potri.004G102400 Populus trichocarpa HOM05D007356 ORTHO05D009247 9.7e-78 295.0 386 47.9
Nitab4.5_0004118g0090 Nicotiana tabacum HOM05D007356 ORTHO05D009247 2.8e-77 293.5 438 43.4
Sopen02g030430 Solanum pennellii HOM05D007356 ORTHO05D009247 1.4e-76 291.2 482 40.9
Lsat_1_v5_gn_4_153101 Lactuca sativa HOM05D007356 ORTHO05D009247 4.1e-76 289.7 473 44.2
Solyc02g085740.4 Solanum lycopersicum HOM05D007356 ORTHO05D009247 7.0e-76 288.9 482 41.1
SGA_v2.0_scaffold33G13428 Striga asiatica HOM05D007356 ORTHO05D009247 2.6e-75 287.0 465 40.0
Cc07_g09030 Coffea canephora HOM05D007356 ORTHO05D009247 4.5e-75 286.2 497 42.1
Migut.H00199 Erythranthe guttata HOM05D007356 ORTHO05D009247 1.9e-73 280.8 458 40.0
MBI16_g25107_MAGBIO Magnolia biondii HOM05D007356 ORTHO05D009247 1.9e-73 280.8 511 39.7
Eucgr.J01469 Eucalyptus grandis HOM05D007356 ORTHO05D009247 3.2e-73 280.0 388 42.5
HanXRQChr14g0438671 Helianthus annuus HOM05D007356 ORTHO05D009247 7.2e-73 278.9 471 44.4
Actinidia18124 Actinidia chinensis HOM05D007356 ORTHO05D009247 4.7e-72 276.2 396 46.7
AL3G11850 Arabidopsis lyrata HOM05D007356 ORTHO05D009247 8.8e-71 271.9 495 38.4
Aa31LG5G12990 Aethionema arabicum HOM05D007356 ORTHO05D009247 5.7e-70 269.2 470 38.9
Oeu030757.2 Olea europaea HOM05D007356 ORTHO05D009247 1.4e-68 264.6 443 40.4
CARHR076490 Cardamine hirsuta HOM05D007356 ORTHO05D009247 1.8e-68 264.2 477 37.7
CSS0016710 Camellia sinensis var. sinensis HOM05D007356 ORTHO05D009247 1.6e-67 261.2 405 44.4
Hund13734 Selenicereus undatus HOM05D007356 ORTHO05D009247 2.7e-67 260.4 508 37.2
Ah.16g101940 Amaranthus hybridus HOM05D007356 ORTHO05D009247 1.6e-64 251.1 492 36.8
RcHm_v2.0_Chr2g0163141 Rosa chinensis HOM05D007356 ORTHO05D009247 7.5e-62 242.3 307 48.2
PSO782G4491 Papaver somniferum HOM05D007356 ORTHO05D009247 2.8e-61 240.4 421 40.9
Sed0002469 Sechium edule HOM05D007356 ORTHO05D009247 2.4e-60 237.3 298 49.7
ECA232G5000 Erigeron canadensis HOM05D007356 ORTHO05D009247 9.1e-60 235.3 334 46.7
AUR62014539 Chenopodium quinoa HOM05D007356 ORTHO05D009247 1.7e-58 231.1 461 35.6
FAN09G4466 Fragaria x ananassa HOM05D007356 ORTHO05D009247 2.3e-58 230.7 302 46.7
DCAR_017218 Daucus carota HOM05D007356 ORTHO05D009247 8.6e-58 228.8 438 37.2
PGR042G1693 Punica granatum HOM05D007356 ORTHO05D009247 1.2e-56 224.9 477 36.7
EL10Ac2g04607 Beta vulgaris HOM05D007356 ORTHO05D009247 2.1e-56 224.2 594 31.6
Glyma.19G045202 Glycine max HOM05D007356 ORTHO05D009247 1.5e-54 218.0 194 63.4
CDE08G0776 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 1.7e-53 214.5 470 33.8
unitig_60.g25515 Utricularia gibba HOM05D007356 ORTHO05D009247 2.3e-50 204.1 453 32.0
GSVIVG01036444001 Vitis vinifera HOM05D007356 ORTHO05D009247 3.3e-49 200.3 198 52.0
MELO3C023764.2 Cucumis melo HOM05D007356 ORTHO05D009247 2.1e-48 197.6 271 44.6
AUR62008964 Chenopodium quinoa HOM05D007356 ORTHO05D009247 2.8e-48 197.2 363 33.9
CiPaw.03G059600 Carya illinoinensis HOM05D007356 ORTHO05D009247 5.4e-44 183.0 289 39.1
CDE02G0316 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 2.7e-43 180.6 413 34.6
Sc11g0008200 Simmondsia chinensis HOM05D007356 ORTHO05D009247 3.6e-40 170.2 258 41.9
Lj2A447T55 Lonicera japonica HOM05D007356 ORTHO05D009247 4.9e-37 159.8 170 50.6
ATR0681G386 Amborella trichopoda HOM05D007356 ORTHO05D009247 6.0e-35 152.9 528 29.4
Os01g0694200 Oryza sativa ssp. japonica HOM05D007356 ORTHO05D009247 2.3e-34 151.0 479 30.7
Sed0015927 Sechium edule HOM05D007356 ORTHO05D009247 1.2e-32 145.2 171 49.1
Aqoxy3G02147 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 1.6e-32 144.8 141 49.6
Zm00001eb155990 Zea mays HOM05D007356 ORTHO05D009247 9.9e-30 135.6 469 30.5
AL3G11840 Arabidopsis lyrata HOM05D007356 ORTHO05D009247 6.4e-29 132.9 184 43.5
Sc11g0008210 Simmondsia chinensis HOM05D007356 ORTHO05D009247 5.8e-22 109.8 142 46.5
Lsat_1_v5_gn_3_87441 Lactuca sativa HOM05D007356 ORTHO05D009247 6.2e-16 89.7 119 41.2
SMO145G0090 Selaginella moellendorffii HOM05D007356 ORTHO05D009247 1.7e-13 81.6 381 26.8
AUR62035477 Chenopodium quinoa HOM05D000128 ORTHO05D000059 2.2e-13 81.3 84 42.9
SEGI_12886 Sequoiadendron giganteum HOM05D007356 ORTHO05D009247 1.1e-12 79.0 196 26.5
Pp3c9_14770 Physcomitrium patens HOM05D007356 ORTHO05D009247 1.3e-10 72.0 206 29.1
Lj2C447T11 Lonicera japonica HOM05D007356 ORTHO05D009247 2.3e-10 71.2 108 38.0
AagrBONN_evm.TU.Sc2ySwM_344.3211 Anthoceros agrestis HOM05D007356 ORTHO05D009247 3.0e-10 70.9 186 29.0
Actinidia15867 Actinidia chinensis HOM05D007356 ORTHO05D009247 6.6e-10 69.7 70 45.7
Pp3c15_5150 Physcomitrium patens HOM05D007356 ORTHO05D009247 9.6e-09 65.9 114 36.0
Mapoly0080s0048 Marchantia polymorpha HOM05D007356 ORTHO05D009247 1.8e-07 61.6 203 26.6


User provided reference genes

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