Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 0.0e+00 1085.1 809 100.0
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 9.9e-227 790.8 798 69.4
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 1.2e-224 783.9 798 73.6
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 1.1e-217 760.8 807 67.2
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 3.2e-217 759.2 813 71.5
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 2.4e-212 743.0 812 75.7
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 2.4e-212 743.0 812 75.7
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 1.0e-207 727.6 780 75.8
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 1.4e-196 690.6 798 70.3
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 4.9e-194 682.2 805 66.7
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 2.5e-193 679.9 809 70.2
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 2.2e-189 666.8 807 59.7
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 1.6e-184 650.6 811 59.9
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 3.0e-183 646.4 833 67.3
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 3.6e-176 622.9 817 59.1
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 8.2e-173 611.7 799 59.2
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 1.9e-169 600.5 786 61.7
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 9.4e-169 598.2 791 58.2
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 2.7e-168 596.7 804 61.6
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 3.9e-167 592.8 838 53.1
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 3.3e-166 589.7 786 54.3
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 9.1e-164 581.6 809 58.5
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 4.5e-163 579.3 809 58.6
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 1.2e-160 571.2 745 59.1
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.1e-160 570.5 807 50.7
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 2.1e-160 570.5 745 59.2
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 4.7e-160 569.3 770 59.5
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 2.3e-159 567.0 740 56.9
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 3.0e-159 566.6 809 55.9
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 2.6e-158 563.5 819 56.9
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 5.7e-158 562.4 794 52.9
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 5.7e-158 562.4 770 60.1
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 7.5e-158 562.0 809 54.5
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 9.7e-158 561.6 770 60.5
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 1.7e-157 560.8 750 64.0
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 8.2e-157 558.5 766 57.8
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 2.4e-156 557.0 770 60.5
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 1.0e-154 551.6 818 55.3
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 1.3e-154 551.2 773 51.9
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 2.2e-154 550.4 808 53.8
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.2e-154 550.4 774 59.3
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 3.8e-154 549.7 763 60.7
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 1.6e-152 544.3 799 54.3
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 1.0e-151 541.6 791 57.0
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 2.3e-151 540.4 805 57.3
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 1.8e-148 530.8 808 55.2
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 3.5e-147 526.6 810 53.6
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 1.3e-146 524.6 514 60.7
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.3e-146 524.6 812 53.4
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.5e-145 521.2 774 58.1
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 2.5e-145 520.4 774 58.0
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 6.1e-144 515.8 808 56.2
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 1.0e-143 515.0 788 53.3
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.4e-143 514.6 812 57.6
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 5.2e-143 512.7 810 49.6
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 1.2e-142 511.5 864 55.4
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 2.0e-142 510.8 808 54.3
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 2.8e-141 506.9 810 53.1
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 8.3e-141 505.4 767 58.9
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 3.5e-139 500.0 805 48.0
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 2.5e-137 493.8 798 53.6
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 4.3e-137 493.0 792 51.5
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 7.3e-137 492.3 805 56.5
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 4.7e-136 489.6 766 52.9
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 6.1e-136 489.2 756 53.0
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 1.4e-135 488.0 819 49.0
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 4.4e-134 483.0 805 54.8
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 6.4e-133 479.2 809 60.4
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 1.9e-132 477.6 770 52.3
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 1.6e-131 474.6 770 51.8
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 1.3e-130 471.5 821 49.3
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 1.7e-130 471.1 754 55.6
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 3.9e-130 469.9 742 56.2
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 3.9e-130 469.9 811 54.6
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.5e-129 468.0 735 51.0
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 3.3e-129 466.8 799 53.2
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 7.3e-129 465.7 816 50.7
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 3.6e-128 463.4 753 56.8
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 4.7e-128 463.0 728 55.2
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 1.2e-126 458.4 749 53.9
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 1.2e-126 458.4 797 56.6
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 2.6e-126 457.2 754 53.8
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 3.5e-123 446.8 504 68.3
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 4.7e-120 436.4 757 50.6
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 5.2e-119 433.0 773 45.8
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.2e-118 431.8 810 46.0
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.0e-118 431.0 807 47.2
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 2.6e-118 430.6 754 48.8
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 8.3e-117 425.6 809 48.2
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 5.4e-116 422.9 790 48.2
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 6.4e-109 399.4 809 45.6
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 4.6e-99 366.7 810 44.6
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 7.8e-99 365.9 531 71.8
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 1.1e-97 362.1 748 46.0
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 2.5e-97 360.9 762 44.5
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 3.6e-96 357.1 770 49.4
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 1.5e-94 351.7 420 59.0
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 2.0e-94 351.3 769 51.4
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.3e-93 348.6 782 46.3
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 3.5e-83 313.9 550 39.5
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 6.2e-80 303.1 200 83.0
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 1.9e-73 281.6 757 32.8
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 1.1e-71 275.8 551 37.6
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 2.9e-69 267.7 777 38.5
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 5.5e-68 263.5 192 77.1
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.1e-67 261.5 276 56.2
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.8e-66 258.5 238 63.0
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.4e-55 221.5 556 32.4
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 6.5e-53 213.4 559 50.3
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 7.2e-52 209.9 158 71.5
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 1.5e-49 202.2 559 49.6
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 5.3e-47 193.7 134 79.9
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.6e-46 191.4 511 36.4
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 5.0e-45 187.2 218 56.0
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 8.0e-43 179.9 166 65.1
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 1.5e-41 175.6 139 75.5
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 4.4e-41 174.1 123 77.2
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 5.7e-41 173.7 180 58.3
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 8.0e-35 153.3 155 55.5
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 7.5e-33 146.7 256 41.4
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.7e-32 145.6 388 50.3
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 3.2e-23 114.8 274 59.9
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 2.7e-22 111.7 95 72.6
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 1.1e-20 106.3 84 66.7
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 5.6e-20 104.0 79 74.7
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 5.2e-18 97.4 175 40.6
Glyma.18G186501 Glycine max HOM05D001343 ORTHO05D007223 7.5e-17 93.6 59 84.7
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 9.8e-17 93.2 135 45.2
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 2.9e-16 91.7 135 45.9
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 4.9e-16 90.9 56 83.9
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 1.7e-13 82.4 55 74.5
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.2e-11 76.3 151 36.4
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 8.9e-10 70.1 160 40.0
arahy.Tifrunner.gnm1.ann1.55UCKQ Arachis hypogaea HOM05D050568 ORTHO05D007223 4.4e-09 67.8 73 50.7
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 5.8e-09 67.4 101 38.6
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 1.4e-07 62.8 66 54.5
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 4.1e-07 61.2 49 71.4
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 9.2e-07 60.1 51 54.9
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 1.2e-06 59.7 52 67.3
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 6.0e-06 57.4 93 37.6


User provided reference genes

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