Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 1.4e-119 433.0 209 100.0
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 1.3e-90 336.7 196 83.7
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 1.7e-90 336.3 211 79.1
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 1.2e-88 330.1 207 77.8
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 4.4e-86 321.6 209 78.9
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 3.7e-85 318.5 209 77.5
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 8.3e-85 317.4 209 77.5
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 2.3e-82 309.3 209 77.0
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 7.3e-73 277.7 212 65.1
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 2.8e-72 275.8 192 68.8
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 2.8e-72 275.8 166 77.1
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 6.1e-72 274.6 186 71.0
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 1.0e-71 273.9 170 74.1
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 1.0e-71 273.9 175 74.9
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 3.1e-71 272.3 187 70.6
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 3.4e-70 268.9 188 72.3
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 4.4e-70 268.5 171 74.3
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.2e-69 266.2 184 69.0
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 2.2e-69 266.2 162 75.3
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 3.7e-69 265.4 158 78.5
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 6.4e-69 264.6 185 68.1
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 8.3e-69 264.2 209 64.1
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 1.4e-68 263.5 193 67.9
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 2.4e-68 262.7 182 68.7
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 3.2e-68 262.3 185 67.0
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 3.2e-68 262.3 185 67.0
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 3.2e-68 262.3 218 61.9
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.2e-67 260.4 169 72.2
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 1.2e-67 260.4 187 70.1
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 1.2e-67 260.4 189 68.3
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 1.6e-67 260.0 149 81.2
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.6e-67 260.0 169 72.8
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 1.6e-67 260.0 207 63.8
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 2.7e-67 259.2 166 74.1
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 2.7e-67 259.2 162 74.7
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 3.5e-67 258.8 200 64.0
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 6.0e-67 258.1 161 75.8
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 6.0e-67 258.1 208 63.5
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 1.0e-66 257.3 192 68.2
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.7e-66 256.5 189 66.1
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 1.7e-66 256.5 193 66.3
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 1.7e-66 256.5 193 66.3
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 1.7e-66 256.5 206 64.6
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 2.3e-66 256.1 178 70.2
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 2.3e-66 256.1 214 62.6
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 3.0e-66 255.8 186 71.0
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 3.9e-66 255.4 146 82.2
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 5.0e-66 255.0 145 80.0
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 8.6e-66 254.2 182 67.0
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 8.6e-66 254.2 165 73.9
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 1.5e-65 253.4 165 74.5
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.5e-65 253.4 165 74.5
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 1.5e-65 253.4 180 71.1
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 1.9e-65 253.1 145 79.3
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 2.5e-65 252.7 151 78.8
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 3.3e-65 252.3 161 72.7
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 9.5e-65 250.8 163 71.8
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 9.5e-65 250.8 145 77.2
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 1.2e-64 250.4 151 78.1
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.6e-64 250.0 175 68.6
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 2.1e-64 249.6 178 69.7
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 4.7e-64 248.4 169 71.6
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 4.7e-64 248.4 146 76.7
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 6.2e-64 248.1 161 71.4
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 1.1e-63 247.3 173 68.2
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 1.1e-63 247.3 160 71.2
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 1.4e-63 246.9 144 77.1
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 1.4e-63 246.9 176 70.5
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 1.8e-63 246.5 195 64.1
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 6.8e-63 244.6 187 62.6
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 8.9e-63 244.2 160 73.8
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 1.2e-62 243.8 201 60.7
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 1.5e-62 243.4 146 74.7
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.5e-62 243.4 159 71.7
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 1.5e-62 243.4 182 64.8
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 2.0e-62 243.0 161 69.6
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 3.4e-62 242.3 146 74.0
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 9.8e-62 240.7 207 58.0
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.7e-61 240.0 196 63.3
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 1.7e-61 240.0 161 69.6
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 3.7e-61 238.8 161 68.3
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 8.3e-61 237.7 146 72.6
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 8.3e-61 237.7 146 72.6
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.1e-60 237.3 181 65.2
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 1.9e-60 236.5 159 69.2
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 1.9e-60 236.5 171 69.6
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 7.0e-60 234.6 146 73.3
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 3.3e-57 225.7 124 81.5
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 5.6e-57 224.9 168 64.9
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.1e-55 220.7 178 65.2
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.1e-55 220.7 178 65.2
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 1.1e-55 220.7 125 80.8
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 2.0e-54 216.5 149 71.1
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 2.6e-54 216.1 169 61.5
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 2.4e-52 209.5 124 75.8
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 2.4e-52 209.5 124 75.8
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 9.2e-52 207.6 158 59.5
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 2.7e-51 206.1 200 56.5
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 1.7e-50 203.4 148 64.9
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 5.1e-50 201.8 153 65.4
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 6.6e-50 201.4 158 63.3
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 6.6e-50 201.4 176 60.8
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 4.3e-49 198.7 148 60.1
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 7.3e-49 198.0 157 62.4
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 1.4e-47 193.7 130 71.5
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.7e-45 186.8 138 60.9
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 1.9e-44 183.3 118 73.7
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 1.2e-43 180.6 171 57.3
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 7.8e-43 177.9 113 74.3
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 7.8e-43 177.9 101 78.2
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 7.8e-43 177.9 124 66.9
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 7.8e-43 177.9 124 66.9
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 1.0e-42 177.6 146 57.5
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 1.7e-42 176.8 99 80.8
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 2.3e-42 176.4 108 69.4
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 2.5e-41 172.9 102 77.5
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 2.5e-41 172.9 144 60.4
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 4.3e-41 172.2 133 58.6
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 1.6e-40 170.2 106 74.5
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 1.6e-40 170.2 112 69.6
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 1.1e-36 157.5 168 50.0
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 6.0e-35 151.8 99 63.6
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 6.0e-35 151.8 130 58.5
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 8.1e-32 141.4 117 60.7
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 4.5e-30 135.6 151 43.0
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 3.5e-27 125.9 75 74.7
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 3.0e-26 122.9 75 73.3
Glyma.19G005502 Glycine max HOM05D005182 ORTHO05D006631 5.1e-26 122.1 87 72.4
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 3.3e-25 119.4 87 66.7
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 9.6e-25 117.9 87 65.5
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 2.1e-24 116.7 87 65.5
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 2.4e-23 113.2 68 75.0
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 5.3e-23 112.1 92 57.6
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 2.0e-22 110.2 63 76.2
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 4.9e-21 105.5 90 52.2
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 4.2e-20 102.4 85 62.4
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 1.8e-18 97.1 63 63.5
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 3.9e-18 95.9 82 59.8
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 1.1e-17 94.4 58 70.7
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 3.3e-17 92.8 56 75.0
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 4.3e-17 92.4 67 62.7
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 8.2e-16 88.2 80 48.8
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 2.5e-12 76.6 48 77.1
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 4.3e-09 65.9 43 65.1
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 1.6e-08 63.9 96 38.5


User provided reference genes

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