Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 3.3e-68 261.5 130 100.0
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 8.3e-35 150.6 129 63.6
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 6.0e-33 144.4 128 60.9
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 1.1e-31 140.2 133 59.4
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 1.5e-28 129.8 131 57.3
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 5.8e-28 127.9 127 56.7
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 1.7e-27 126.3 130 56.2
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 2.9e-27 125.6 131 54.2
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 4.1e-26 121.7 121 57.0
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 1.6e-25 119.8 104 63.5
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 1.1e-23 113.6 101 62.4
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 7.3e-23 110.9 119 53.8
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 3.6e-22 108.6 111 54.1
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 1.1e-21 107.1 117 53.8
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 4.0e-21 105.1 110 54.5
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 8.9e-21 104.0 110 50.9
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 8.9e-21 104.0 105 52.4
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 4.4e-20 101.7 106 51.9
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 5.8e-20 101.3 110 48.2
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 2.9e-19 99.0 104 54.8
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 4.9e-19 98.2 107 53.3
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 2.4e-18 95.9 110 53.6
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 2.4e-18 95.9 100 51.0
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 2.4e-18 95.9 96 54.2
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 4.2e-18 95.1 115 48.7
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 4.2e-18 95.1 112 52.7
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 5.4e-18 94.7 93 55.9
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.2e-17 93.6 96 54.2
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 2.1e-17 92.8 109 52.3
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 3.5e-17 92.0 113 50.4
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 4.6e-17 91.7 101 52.5
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 6.0e-17 91.3 115 47.8
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 6.0e-17 91.3 96 53.1
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 6.0e-17 91.3 88 55.7
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 6.0e-17 91.3 96 53.1
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 2.3e-16 89.4 114 48.2
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 3.0e-16 89.0 115 48.7
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 3.0e-16 89.0 114 50.0
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 6.6e-16 87.8 74 60.8
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 8.7e-16 87.4 96 53.1
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 1.5e-15 86.7 115 46.1
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 2.5e-15 85.9 99 50.5
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 2.5e-15 85.9 103 49.5
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 3.3e-15 85.5 109 45.0
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 4.3e-15 85.1 116 47.4
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 4.3e-15 85.1 88 58.0
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 4.3e-15 85.1 107 52.3
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 4.3e-15 85.1 81 55.6
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 4.3e-15 85.1 81 55.6
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 4.3e-15 85.1 81 55.6
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 7.3e-15 84.3 109 47.7
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 9.6e-15 84.0 102 51.0
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 1.3e-14 83.6 98 52.0
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.6e-14 83.2 73 58.9
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 6.2e-14 81.3 73 57.5
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 8.1e-14 80.9 111 46.8
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 8.1e-14 80.9 82 58.5
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 5.3e-13 78.2 102 49.0
arahy.Tifrunner.gnm1.ann1.K9PA59 Arachis hypogaea HOM05D006882 ORTHO05D008688 6.9e-13 77.8 64 64.1
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 9.0e-13 77.4 77 50.6
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 1.5e-12 76.6 107 43.9
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 2.6e-12 75.9 102 48.0
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 2.6e-12 75.9 98 45.9
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 4.4e-12 75.1 116 44.0
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 4.4e-12 75.1 77 49.4
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 7.6e-12 74.3 51 62.7
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 1.3e-11 73.6 98 45.9
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 4.9e-11 71.6 116 44.8
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 1.1e-10 70.5 116 42.2
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 1.1e-10 70.5 118 39.0
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 1.1e-10 70.5 106 42.5
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.1e-10 70.5 108 41.7
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.1e-10 70.5 108 41.7
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 1.4e-10 70.1 118 40.7
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 1.9e-10 69.7 66 53.0
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 3.2e-10 68.9 120 40.8
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 4.2e-10 68.6 90 50.0
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 5.4e-10 68.2 61 59.0
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 5.4e-10 68.2 66 51.5
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 5.4e-10 68.2 89 47.2
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 5.4e-10 68.2 113 44.2
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 7.1e-10 67.8 56 57.1
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 7.1e-10 67.8 56 57.1
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 7.1e-10 67.8 56 57.1
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 1.6e-09 66.6 116 40.5
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 1.6e-09 66.6 63 52.4
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 2.1e-09 66.2 104 40.4
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 2.1e-09 66.2 64 54.7
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 2.1e-09 66.2 77 48.1
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 3.5e-09 65.5 100 42.0
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 4.6e-09 65.1 100 43.0
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 4.6e-09 65.1 111 41.4
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 4.6e-09 65.1 92 45.7
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 1.0e-08 63.9 82 50.0
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 1.3e-08 63.5 79 45.6
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 1.7e-08 63.2 99 44.4
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 3.0e-08 62.4 59 47.5
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 3.9e-08 62.0 55 54.5
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 6.6e-08 61.2 101 43.6
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 8.7e-08 60.8 47 63.8
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 1.1e-07 60.5 103 43.7
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 1.6e-06 56.6 129 35.7
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 2.8e-06 55.8 121 37.2
CDE04G1794 Ceratophyllum demersum HOM05D006882 ORTHO05D008688 4.8e-06 55.1 56 50.0
HanXRQChr09g0272731 Helianthus annuus HOM05D006882 ORTHO05D048217 4.8e-06 55.1 36 72.2
Lsat_1_v5_gn_4_172620 Lactuca sativa HOM05D006882 ORTHO05D048217 4.8e-06 55.1 69 46.4
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 6.2e-06 54.7 65 44.6
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 6.2e-06 54.7 50 56.0
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 6.2e-06 54.7 65 49.2
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 6.2e-06 54.7 89 44.9


User provided reference genes

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